Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

6067258 .. 6075294

Gene Structure 8037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3666 bp

ATGGCCGATGCTGCACCACCGGATATTCCTCCGGAATGTGTGAGCAGTCAAACTGCAAAATGCCAAGAAGAAAGTACGTCAGGACAGACACATGACATTGGTTCAGAAAGTGGATATGGTGAACCAACCAAGCAAACGATTGGTTGTGATGTTCTTCAAAATGAGCTACAGGAAATCTGCAACGCATCCAATAATGCTGATGATCAATCACAGTCATTTGGAAATTTGACTGAGAAGTCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGTGAGCGACATTAGTCAAGGTGCTGCTGTAAACCTTCTTACCAAATCAGCACACAGACATCCTTCCACCTCTGAAAACATTCAAAATGGACCATTACAAATCAGAACAGCATTATCTAGTTGTACTACCAGTGACCACTTGCAATCATTTTCTGGCAATGTGACCAAGAATTCTCTTGCTGAAAAATTGGAACTGCCTTGTGAAGAGCCTGATGAAGATCTGGGTTGTCAGACTGGAAAAACTTCATGCTCTGAACAGATTTCACTGGAACAGAGAAATGATTTTGGTTTCGGAACAAGAGAAGAAAAGCAGCATATCGGCTCTGATATTGTTCAAAATGAAATCTTACAAACTATTATTCCAGTATCCAGCTGTGGCAATGAACAATTGCAGTTGATTAGTGAAACTGTGAACGTGACTTTTCCTAATGAACAAGCAGGAGTGCCTCCTGAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGGAACTCAATCTAGTGAACTAGCAGAAGACAAGCAGCATTTTGGCTCTGATGTTCCACAAAACGAAGGGTTACAAAGCCAATCTTGGACTGATACGTTTAGACCAGAGGTACCCAGCTGTGATGGTAATGAACCATTGCAGTCATTTTGTGAAAATATGAACACAAGTTCTCTTAATGAACAAGCGGGACTGCCTTGTGAAGGTGTGAAAAAGACTTTGGAACAGACAAATAATGTGAATTCTGGAACTTCATATAGTGAACCAGCAGAAGAGAACCAGAATTTGGGCTCAGATTTTGTACAAGATGAACCATTACAAACTATTATCCCAGTAGCCAGCTGTGGTGGCAACGAACAGTTGCAGGTGGTTAATGAAGTTGCGAGTGTTACTTCTCTTAGTGAACAAGCGGGACTGCCTCTTGAAGCTGTGAGCAAGACTTGTCAGTCTGAAAAACTTTCATGCTCTCTCCAAACTGCATCGGATCAGATCAATGAATCTGGTTCGGGAAGTGTACATTGTGAACCACAGGAACAGAGAGGTCAGCTTGGCCTTTTACCTTCCCAAAATGATCAAGTTAAAACTTGCACTGCAGTATCCAGGTCCATTGTTTCTGAACAATCGGGCCCTTCTGTTGAAGAGATGAAGAATTCTGTTATTGGGCATTTGGAACCACCCCTTGAAGATGCAAGCAAGGACCATACTGATGAACTAATCAAACCACACACGAACAATGCACCCCAAAATTCTAGTCTTGAGCCATCAGAAACAGCGTCTGAGAATGCATCTAAAATTTCTAGCCAGTTCGGTTGCAAGGACAAGCAAGATTCAAGTTCAAGACAAAAGTCGAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACGGCGGAGAAACCTGAAGCTCCTGAATTAAGTAATAATGTTGCAACACTTGAATCAAGTAATAGTGTTGCTAATGTAAGCAATGAGAAAGAGGGAAAAAGGAAGAAGAGAAAGAAGAAACACAGGGAAAGAGTTGCAGCTGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTGGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAAATAAGGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGCAAATTGAAAATAAGAGATCTTTTTCAACGTCTTGATTCACTATGTGCCGAAGGAATGTTTCCAGAATCTTTATTTGATTCAGACGGACAGATTGACAGTGAGGATATATTCTGCGCAAAATGTGGGTCCAAGGATGTGTATGCTGATAATGACATCATACTCTGTGATGGGGCTTGTGACCGTGGATTCCACCAGTATTGTCTGGAACCGCCTCTATTGAGTGAAGAAATTCCGCCTGATGATGAGGGTTGGTTATGCACTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATCTCTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCAGCTGTTGCAGCATCAGCAGGACAGCATCAGGAGAACAACCAGGGACTTCCATCAGATGATTCTGATGATAATGATTATGACCCCGATGGTCCAGAGACGGATGAGGAAGTCCAGGAAGCAGAATCAAGTTCCGATGAATCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTAATGATGAGCAGTACTTAGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTCAATCCTGATGCTCCAGATCCCACAGAGGATGTTAAGCAGGACAGTTCAGGCTCTGATTTTACATCTGACTCTGAGGATCTCGCAGCTGTACTAGATGAGGATAATAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTTTGTTGGAAGGAAGTACGCTTCTTAGAGGCTCTGGTGAAAAAAGTTCTAAACGTGGGCAGAAGAGACATTCCATAAAAGATGAGATATCATCTTTATTAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCACGTAGAGAGGCTGGACTACAAAAAGCTGCATGATGCGGAATATGGAAATATTCCTACAAGTGACGATGAAGATTATAATGAAACTGCTGCACCGAGGAAAAGGAAGAAAGGTACTGGACAAGTCTCTCCAGCGTCGCTAAAAGGAAAACCCTCAACCATTAAGAATGGAGTAACCTCCAAAGATATAAAAGATGATCCAGACAAGAATGAGCATACTCCTAGAAGAACACCTCGACGAAAGTCAAGTGCTAAAGATAACAGCAGTTCACCAAATGAATCGCTTAAAAGCTCTCCTAAGTCTGGTTCTACTAGTGGGAGAGCTAGAGCATCAAAATATAGAAGACTCGGGGAAGCTGTAACTCAGCAACTCTATACATCCTTCAAGGAAAATCAATACCCAGACCGAAGTATGAAGGAAAGACTGGCCCAAGAACTAGGAGTCATGGCTAAGCAGGTAAGCAAATGGTTTGAAAATGCTCGCCATTGTGTGAAAGCAGGTCTGGCCGTGCCTCAAGCTATGAGAAAACAACCTAACCAAGCAGAGACTAATATCAGAGATGCTGATCACAATGGAGCTCAGAAGAATGAATCACCAGGGACAGATGATGCTGTGGCAGGTTGCTGCAGTCAGGATGTGAAGGATAATAAATCGGCGAATCCAAAAAGCAGCAGAGCAAAGACTAGTACCCCAAAGGGTAGAAAGAGAAAATCAAGGTTGGATCCTGGGGGATCGGATCTTGATGAAAAATTTAAGACACCACCAGAAACTAGTAGTAAAGGTGGTCGAGTTACAAGACGACGGAAATCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1221

Amino Acids

133.04

Weight (kDa)

4.75

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	692 - 743	2.6e-09	PHD-finger
Homeodomain	PF00046	1064 - 1110	6.8e-10	Homeodomain
Homeobox_KN	PF05920	1080 - 1110	3.1e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2925
AarI	CACCTGC	1 cut(s)	1120
AasI	GACNNNNNNGTC	2 cut(s)	235, 1210
Acc16I	TGCGCA	1 cut(s)	2077
Acc36I	ACCTGC	4 cut(s)	1120, 3292, 3335, 3455
Acc65I	GGTACC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	877
AccB7I	CCANNNNNTGG	1 cut(s)	1051
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	6 cut(s)	953, 1175, 1658, 2171, 2195, 2885
AcoI	YGGCCR	3 cut(s)	3, 2812, 3351
AcuI	CTGAAG	4 cut(s)	288, 744, 1689, 2337
AdeI	CACNNNGTG	1 cut(s)	2006
AfiI	CCNNNNNNNGG	4 cut(s)	968, 1051, 2837, 3149
AhlI	ACTAGT	3 cut(s)	3158, 3530, 3617
AjnI	CCWGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
AjuI	GAANNNNNNNTTGG	4 cut(s)	968, 1000, 1034, 1066
Alw21I	GWGCWC	1 cut(s)	3427
Alw26I	GTCTC	6 cut(s)	243, 2411, 2486, 2758, 2977, 3386
AlwNI	CAGNNNCTG	4 cut(s)	1541, 2480, 2612, 2810
Ama87I	CYCGRG	1 cut(s)	3194
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	8 cut(s)	3, 1315, 1390, 1916, 2687, 2812, 3273, 3351
ApaI	GGGCCC	2 cut(s)	1394, 2691
ArsI	GACNNNNNNTTYG	4 cut(s)	1501, 1533, 2072, 2104
Asp700I	GAANNNNTTC	4 cut(s)	351, 514, 1953, 2190
Asp718I	GGTACC	1 cut(s)	877
AspLEI	GCGC	2 cut(s)	1647, 2078
AsuHPI	GGTGA	7 cut(s)	131, 233, 1892, 2693, 2747, 3108, 3432
AvaI	CYCGRG	1 cut(s)	3194
AvaII	GGWCC	5 cut(s)	362, 1368, 1462, 2088, 2411
BaeGI	GKGCMC	2 cut(s)	1394, 2691
BaeI	ACNNNNGTAYC	2 cut(s)	1344, 1377
BalI	TGGCCA	1 cut(s)	2814
BamHI	GGATCC	1 cut(s)	3568
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	4 cut(s)	1058, 1394, 2691, 3427
BbsI	GAAGAC	2 cut(s)	801, 3196
Bbv12I	GWGCWC	1 cut(s)	3427
BccI	CCATC	7 cut(s)	884, 1534, 2123, 2380, 2402, 2477, 2813
BceAI	ACGGC	2 cut(s)	1671, 3338
BciT130I	CCWGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
BciVI	GTATCC	2 cut(s)	649, 1372
BclI	TGATCA	3 cut(s)	202, 1336, 3412
BcoDI	GTCTC	6 cut(s)	243, 2411, 2486, 2758, 2977, 3386
BcuI	ACTAGT	3 cut(s)	3158, 3530, 3617
BfmI	CTRYAG	3 cut(s)	167, 1356, 3472
BfuAI	ACCTGC	4 cut(s)	1120, 3292, 3335, 3455
BfuI	GTATCC	2 cut(s)	649, 1372
BglII	AGATCT	4 cut(s)	490, 1616, 1978, 2278
BlpI	GCTNAGC	1 cut(s)	3297
BmcAI	AGTACT	1 cut(s)	2519
Bme1390I	CCNGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
Bme18I	GGWCC	5 cut(s)	362, 1368, 1462, 2088, 2411
BmeT110I	CYCGRG	1 cut(s)	3194
BmiI	GGNNCC	9 cut(s)	747, 879, 1392, 1437, 2089, 2169, 2689, 2690, 3570
BmrFI	CCNGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
BmrI	ACTGGG	2 cut(s)	1091, 2686
BmuI	ACTGGG	2 cut(s)	1091, 2686
BoxI	GACNNNNGTC	3 cut(s)	285, 1609, 3088
BpiI	GAAGAC	2 cut(s)	801, 3196
BpmI	CTGGAG	2 cut(s)	2556, 2961
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	3297
BpuEI	CTTGAG	5 cut(s)	1541, 1633, 2253, 2510, 3345
BsaAI	YACGTR	1 cut(s)	2851
BsaBI	GATNNNNATC	3 cut(s)	489, 2559, 3411
BsaI	GGTCTC	1 cut(s)	2486
BsaJI	CCNNGG	6 cut(s)	2091, 2143, 2362, 2942, 3443, 3572
BsaWI	WCCGGW	3 cut(s)	19, 31, 1839
Bsc4I	CCNNNNNNNGG	4 cut(s)	968, 1051, 2837, 3149
Bse3DI	GCAATG	4 cut(s)	436, 658, 902, 1741
Bse8I	GATNNNNATC	3 cut(s)	489, 2559, 3411
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
BseDI	CCNNGG	6 cut(s)	2091, 2143, 2362, 2942, 3443, 3572
BseGI	GGATG	9 cut(s)	185, 331, 2101, 2231, 2428, 2554, 2593, 3224, 3487
BseJI	GATNNNNATC	3 cut(s)	489, 2559, 3411
BseLI	CCNNNNNNNGG	4 cut(s)	968, 1051, 2837, 3149
BseMI	GCAATG	4 cut(s)	436, 658, 902, 1741
BseMII	CTCAG	8 cut(s)	222, 237, 1071, 1533, 1814, 2622, 3224, 3440
BseSI	GKGCMC	2 cut(s)	1394, 2691
BseYI	CCCAGC	2 cut(s)	881, 2298
BsgI	GTGCAG	1 cut(s)	2922
BshFI	GGCC	8 cut(s)	5, 1317, 1392, 1918, 2689, 2814, 3275, 3353
BshNI	GGYRCC	1 cut(s)	877
BsiHKAI	GWGCWC	1 cut(s)	3427
BsiHKCI	CYCGRG	1 cut(s)	3194
BsiSI	CCGG	3 cut(s)	20, 32, 1840
BslFI	GGGAC	5 cut(s)	270, 969, 1191, 2379, 3460
BslI	CCNNNNNNNGG	4 cut(s)	968, 1051, 2837, 3149
BsmAI	GTCTC	6 cut(s)	243, 2411, 2486, 2758, 2977, 3386
BsmBI	CGTCTC	1 cut(s)	2411
BsmFI	GGGAC	5 cut(s)	270, 969, 1191, 2379, 3460
BsmI	GAATGC	1 cut(s)	1552
BsnI	GGCC	8 cut(s)	5, 1317, 1392, 1918, 2689, 2814, 3275, 3353
Bso31I	GGTCTC	1 cut(s)	2486
BsoBI	CYCGRG	1 cut(s)	3194
Bsp120I	GGGCCC	2 cut(s)	1390, 2687
Bsp1286I	GDGCHC	4 cut(s)	1058, 1394, 2691, 3427
Bsp13I	TCCGGA	1 cut(s)	31
Bsp1407I	TGTACA	2 cut(s)	1066, 1279
Bsp1720I	GCTNAGC	1 cut(s)	3297
BspACI	CCGC	6 cut(s)	953, 1175, 1658, 2171, 2195, 2885
BspANI	GGCC	8 cut(s)	5, 1317, 1392, 1918, 2689, 2814, 3275, 3353
BspCNI	CTCAG	8 cut(s)	223, 238, 1070, 1534, 1815, 2623, 3223, 3439
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	9 cut(s)	747, 879, 1392, 1437, 2089, 2169, 2689, 2690, 3570
BspMAI	CTGCAG	2 cut(s)	1360, 3476
BspMI	ACCTGC	4 cut(s)	1120, 3292, 3335, 3455
BspQI	GCTCTTC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	2486
BsrDI	GCAATG	4 cut(s)	436, 658, 902, 1741
BsrGI	TGTACA	2 cut(s)	1066, 1279
BssECI	CCNNGG	6 cut(s)	2091, 2143, 2362, 2942, 3443, 3572
BssT1I	CCWWGG	1 cut(s)	2091
Bst2UI	CCWGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
Bst4CI	ACNGT	6 cut(s)	213, 682, 1125, 2060, 2144, 2603
Bst6I	CTCTTC	5 cut(s)	471, 1032, 1398, 1754, 2756
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstAUI	TGTACA	2 cut(s)	1066, 1279
BstBAI	YACGTR	1 cut(s)	2851
BstC8I	GCNNGC	3 cut(s)	1105, 1456, 3328
BstDSI	CCRYGG	1 cut(s)	2143
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	9 cut(s)	185, 331, 2101, 2231, 2428, 2554, 2593, 3224, 3487
BstHHI	GCGC	2 cut(s)	1647, 2078
BstMAI	GTCTC	6 cut(s)	243, 2411, 2486, 2758, 2977, 3386
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 1113, 2327, 2330, 2336, 3350
BstNI	CCWGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
BstPAI	GACNNNNGTC	3 cut(s)	285, 1609, 3088
BstSCI	CCNGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
BstSFI	CTRYAG	3 cut(s)	167, 1356, 3472
BstSLI	GKGCMC	2 cut(s)	1394, 2691
BstV2I	GAAGAC	2 cut(s)	801, 3196
BstX2I	RGATCY	9 cut(s)	490, 1616, 1978, 2278, 2575, 2635, 2806, 3568, 3583
BstYI	RGATCY	9 cut(s)	490, 1616, 1978, 2278, 2575, 2635, 2806, 3568, 3583
BsuI	GTATCC	2 cut(s)	649, 1372
BsuRI	GGCC	8 cut(s)	5, 1317, 1392, 1918, 2689, 2814, 3275, 3353
BtgI	CCRYGG	1 cut(s)	2143
BtsCI	GGATG	9 cut(s)	185, 331, 2101, 2231, 2428, 2554, 2593, 3224, 3487
BtsI	GCAGTG	2 cut(s)	1353, 1636
BtsIMutI	CAGTG	6 cut(s)	409, 536, 1353, 1636, 2065, 2220
BveI	ACCTGC	4 cut(s)	1120, 3292, 3335, 3455
Cac8I	GCNNGC	3 cut(s)	1105, 1456, 3328
CaiI	CAGNNNCTG	4 cut(s)	1541, 2480, 2612, 2810
CfoI	GCGC	2 cut(s)	1647, 2078
CseI	GACGC	3 cut(s)	1527, 1968, 2970
CspCI	CAANNNNNGTGG	2 cut(s)	2141, 2176
CviAII	CATG	5 cut(s)	92, 519, 1227, 2879, 3292
DraIII	CACNNNGTG	1 cut(s)	2006
DrdI	GACNNNNNNGTC	2 cut(s)	235, 1210
DseDI	GACNNNNNNGTC	2 cut(s)	235, 1210
EaeI	YGGCCR	3 cut(s)	3, 2812, 3351
Eam1104I	CTCTTC	5 cut(s)	471, 1032, 1398, 1754, 2756
EarI	CTCTTC	5 cut(s)	471, 1032, 1398, 1754, 2756
EciI	GGCGGA	2 cut(s)	1673, 2184
Ecl136II	GAGCTC	1 cut(s)	3425
Eco130I	CCWWGG	1 cut(s)	2091
Eco24I	GRGCYC	4 cut(s)	1058, 1394, 2691, 3427
Eco31I	GGTCTC	1 cut(s)	2486
Eco32I	GATATC	1 cut(s)	2787
Eco47I	GGWCC	5 cut(s)	362, 1368, 1462, 2088, 2411
Eco53kI	GAGCTC	1 cut(s)	3425
Eco57I	CTGAAG	4 cut(s)	288, 744, 1689, 2337
Eco88I	CYCGRG	1 cut(s)	3194
EcoICRI	GAGCTC	1 cut(s)	3425
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoO109I	RGGNCCY	3 cut(s)	1391, 2687, 2688
EcoRI	GAATTC	3 cut(s)	442, 1006, 1414
EcoRII	CCWGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
EcoRV	GATATC	1 cut(s)	2787
EcoT14I	CCWWGG	1 cut(s)	2091
EcoT22I	ATGCAT	2 cut(s)	1552, 2473
EcoT38I	GRGCYC	4 cut(s)	1058, 1394, 2691, 3427
ErhI	CCWWGG	1 cut(s)	2091
Esp3I	CGTCTC	1 cut(s)	2411
FaeI	CATG	5 cut(s)	95, 522, 1230, 2882, 3295
FalI	AAGNNNNNCTT	2 cut(s)	835, 867
FaqI	GGGAC	5 cut(s)	270, 969, 1191, 2379, 3460
FatI	CATG	5 cut(s)	91, 518, 1226, 2878, 3291
FauI	CCCGC	2 cut(s)	946, 1168
FbaI	TGATCA	3 cut(s)	202, 1336, 3412
FokI	GGATG	9 cut(s)	172, 318, 2108, 2238, 2435, 2561, 2600, 3211, 3494
FriOI	GRGCYC	4 cut(s)	1058, 1394, 2691, 3427
FspI	TGCGCA	1 cut(s)	2077
GlaI	GCGC	2 cut(s)	1646, 2077
GsaI	CCCAGC	2 cut(s)	885, 2302
GsuI	CTGGAG	2 cut(s)	2556, 2961
HaeIII	GGCC	8 cut(s)	5, 1317, 1392, 1918, 2689, 2814, 3275, 3353
HapII	CCGG	3 cut(s)	20, 32, 1840
HgaI	GACGC	3 cut(s)	1527, 1968, 2970
HhaI	GCGC	2 cut(s)	1647, 2078
Hin1II	CATG	5 cut(s)	95, 522, 1230, 2882, 3295
Hin6I	GCGC	2 cut(s)	1645, 2076
HinP1I	GCGC	2 cut(s)	1645, 2076
HpaII	CCGG	3 cut(s)	20, 32, 1840
HphI	GGTGA	7 cut(s)	131, 233, 1892, 2693, 2747, 3108, 3432
Hpy166II	GTNNAC	9 cut(s)	122, 304, 685, 785, 1028, 1169, 1280, 1289, 3116
Hpy8I	GTNNAC	9 cut(s)	122, 304, 685, 785, 1028, 1169, 1280, 1289, 3116
Hpy99I	CGWCG	4 cut(s)	1962, 2986, 3087, 3651
HpyCH4III	ACNGT	6 cut(s)	213, 682, 1125, 2060, 2144, 2603
HpyCH4IV	ACGT	6 cut(s)	77, 687, 863, 1990, 2752, 2850
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 1113, 2327, 2330, 2336, 3350
HpySE526I	ACGT	6 cut(s)	77, 687, 863, 1990, 2752, 2850
Hsp92II	CATG	5 cut(s)	95, 522, 1230, 2882, 3295
HspAI	GCGC	2 cut(s)	1645, 2076
Kpn2I	TCCGGA	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	881
Ksp22I	TGATCA	3 cut(s)	202, 1336, 3412
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	4 cut(s)	1678, 1927, 2575, 3422
MaeII	ACGT	6 cut(s)	77, 687, 863, 1990, 2752, 2850
MfeI	CAATTG	2 cut(s)	251, 659
MflI	RGATCY	9 cut(s)	490, 1616, 1978, 2278, 2575, 2635, 2806, 3568, 3583
MhlI	GDGCHC	4 cut(s)	1058, 1394, 2691, 3427
MlsI	TGGCCA	1 cut(s)	2814
MluNI	TGGCCA	1 cut(s)	2814
MlyI	GAGTC	5 cut(s)	2258, 2621, 2810, 3186, 3297
MmeI	TCCRAC	3 cut(s)	1868, 2685, 3546
Mox20I	TGGCCA	1 cut(s)	2814
Mph1103I	ATGCAT	2 cut(s)	1552, 2473
MroI	TCCGGA	1 cut(s)	31
MroXI	GAANNNNTTC	4 cut(s)	351, 514, 1953, 2190
MscI	TGGCCA	1 cut(s)	2814
MseI	TTAA	9 cut(s)	942, 1137, 1344, 1682, 2259, 2592, 3009, 3132, 3600
MslI	CAYNNNNRTG	1 cut(s)	1470
Msp20I	TGGCCA	1 cut(s)	2814
MspA1I	CMGCKG	7 cut(s)	645, 885, 1107, 1793, 2298, 2324, 2645
MspI	CCGG	3 cut(s)	20, 32, 1840
MspR9I	CCNGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
MunI	CAATTG	2 cut(s)	251, 659
Mva1269I	GAATGC	1 cut(s)	1552
MvaI	CCWGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
MwoI	GCNNNNNNNGC	6 cut(s)	11, 1113, 2327, 2330, 2336, 3350
NlaIII	CATG	5 cut(s)	95, 522, 1230, 2882, 3295
NlaIV	GGNNCC	9 cut(s)	747, 879, 1392, 1437, 2089, 2169, 2689, 2690, 3570
NmuCI	GTSAC	8 cut(s)	404, 433, 688, 1631, 1815, 2138, 2228, 2909
NsbI	TGCGCA	1 cut(s)	2077
NsiI	ATGCAT	2 cut(s)	1552, 2473
PaqCI	CACCTGC	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	471
PctI	GAATGC	1 cut(s)	1552
PdmI	GAANNNNTTC	4 cut(s)	351, 514, 1953, 2190
PflMI	CCANNNNNTGG	1 cut(s)	1051
PfoI	TCCNGGA	1 cut(s)	2433
PleI	GAGTC	5 cut(s)	2258, 2621, 2809, 3186, 3296
PpsI	GAGTC	5 cut(s)	2258, 2621, 2809, 3186, 3296
Ppu21I	YACGTR	1 cut(s)	2851
PshAI	GACNNNNGTC	3 cut(s)	285, 1609, 3088
PsiI	TTATAA	1 cut(s)	2925
Psp124BI	GAGCTC	1 cut(s)	3427
Psp6I	CCWGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
PspFI	CCCAGC	2 cut(s)	881, 2298
PspGI	CCWGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
PspN4I	GGNNCC	9 cut(s)	747, 879, 1392, 1437, 2089, 2169, 2689, 2690, 3570
PspOMI	GGGCCC	2 cut(s)	1390, 2687
PstI	CTGCAG	2 cut(s)	1360, 3476
PstNI	CAGNNNCTG	4 cut(s)	1541, 2480, 2612, 2810
PsuI	RGATCY	9 cut(s)	490, 1616, 1978, 2278, 2575, 2635, 2806, 3568, 3583
PvuII	CAGCTG	7 cut(s)	645, 885, 1107, 1793, 2298, 2324, 2645
RseI	CAYNNNNRTG	1 cut(s)	1470
SacI	GAGCTC	1 cut(s)	3427
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	9 cut(s)	942, 1137, 1344, 1682, 2259, 2592, 3009, 3132, 3600
ScaI	AGTACT	1 cut(s)	2519
SchI	GAGTC	5 cut(s)	2258, 2621, 2810, 3186, 3297
ScrFI	CCNGG	6 cut(s)	1366, 2363, 2435, 2811, 3444, 3573
SduI	GDGCHC	4 cut(s)	1058, 1394, 2691, 3427
SfcI	CTRYAG	3 cut(s)	167, 1356, 3472
SinI	GGWCC	5 cut(s)	362, 1368, 1462, 2088, 2411
SmiMI	CAYNNNNRTG	1 cut(s)	1470
SmlI	CTYRAG	5 cut(s)	1520, 1648, 2268, 2489, 3360
SmoI	CTYRAG	5 cut(s)	1520, 1648, 2268, 2489, 3360
SpeI	ACTAGT	3 cut(s)	3158, 3530, 3617
SsiI	CCGC	6 cut(s)	953, 1175, 1658, 2171, 2195, 2885
SspI	AATATT	1 cut(s)	2899
SstI	GAGCTC	1 cut(s)	3427
StyD4I	CCNGG	6 cut(s)	1364, 2361, 2433, 2809, 3442, 3571
StyI	CCWWGG	1 cut(s)	2091
TaaI	ACNGT	6 cut(s)	213, 682, 1125, 2060, 2144, 2603
TaiI	ACGT	6 cut(s)	80, 690, 866, 1993, 2755, 2853
TaqI	TCGA	4 cut(s)	1613, 1957, 3082, 3634
TaqII	GACCGA	1 cut(s)	3267
TatI	WGTACW	5 cut(s)	395, 1066, 1279, 2517, 2647
Tru1I	TTAA	9 cut(s)	942, 1137, 1344, 1682, 2259, 2592, 3009, 3132, 3600
Tru9I	TTAA	9 cut(s)	942, 1137, 1344, 1682, 2259, 2592, 3009, 3132, 3600
TscAI	CASTG	6 cut(s)	409, 543, 1360, 1636, 2065, 2227
TseFI	GTSAC	8 cut(s)	404, 433, 688, 1631, 1815, 2138, 2228, 2909
Tsp45I	GTSAC	8 cut(s)	404, 433, 688, 1631, 1815, 2138, 2228, 2909
TspGWI	ACGGA	3 cut(s)	2061, 2435, 3664
TspRI	CASTG	6 cut(s)	409, 543, 1360, 1636, 2065, 2227
Van91I	CCANNNNNTGG	1 cut(s)	1051
VpaK11BI	GGWCC	5 cut(s)	362, 1368, 1462, 2088, 2411
XagI	CCTNNNNNAGG	1 cut(s)	966
XmnI	GAANNNNTTC	4 cut(s)	351, 514, 1953, 2190
ZrmI	AGTACT	1 cut(s)	2519
Zsp2I	ATGCAT	2 cut(s)	1552, 2473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.