Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296759.1

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 719

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ctggagccgcctctattgagtgaagaaattccgcctgatgatgacggttggttatgccctggatgtgactgcaaagttgattgcattgatttgcttaatgactctcaaggaacagatctctctattactgacagctgggagaaggtatttcctgaagcagctgttgcagcatcagcaggacagcatcaggagaacaaccagggacttccatcagatgattctgatgataatgattatgaccctgatggtccagagacggatgaggaagtccaggaagcagaatcaagttccgatgaatctgaatatgcatcagcatctgatggacttgagaccccaaaaactaatgatgagcagtacttagggcttccttctgatgattcagaggatgatgatttcaatcctgatgctccagatcccacagaggatgttaagcaggacagttcaagctctgattttacatctgactctgaggatctcgcagctgtactagatgaggataataagtcttttgaaaatggtgaagggccccagtcatctttgttggaaggaagtacgcttctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

187

Amino Acids

20.06

Weight (kDa)

4.05

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 32
AclWI	GGATC	2 cut(s)	407, 480
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	3 cut(s)	356, 486, 553
AgsI	TTSAA	3 cut(s)	397, 444, 512
AjnI	CCWGG	3 cut(s)	58, 198, 270
AluBI	AGCT	4 cut(s)	135, 161, 447, 482
AluI	AGCT	4 cut(s)	135, 161, 447, 482
Alw26I	GTCTC	2 cut(s)	248, 323
AlwI	GGATC	2 cut(s)	407, 480
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	524
ApaI	GGGCCC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	158, 167, 479
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	248, 524, 525
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	170, 179, 491
BccI	CCATC	3 cut(s)	217, 239, 314
BciT130I	CCWGG	3 cut(s)	60, 200, 272
BcoDI	GTCTC	2 cut(s)	248, 323
BfaI	CTAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	4 cut(s)	8, 159, 168, 480
BlsI	GCNGC	4 cut(s)	9, 160, 169, 481
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	60, 200, 272
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	248, 524, 525
BmiI	GGNNCC	3 cut(s)	6, 526, 527
BmrFI	CCNGG	3 cut(s)	60, 200, 272
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	5 cut(s)	179, 193, 317, 323, 394
BmuI	ACTGGG	1 cut(s)	523
BpmI	CTGGAG	2 cut(s)	23, 393
BpuEI	CTTGAG	2 cut(s)	90, 347
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	58, 199
Bse1I	ACTGG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	60, 200, 272
BseDI	CCNNGG	2 cut(s)	58, 199
BseGI	GGATG	4 cut(s)	68, 265, 391, 430
BseJI	GATNNNNATC	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	170, 179, 491
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	248, 323
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	526
Bso31I	GGTCTC	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	115, 412, 472
BspACI	CCGC	2 cut(s)	8, 32
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	6, 526, 527
BspPI	GGATC	2 cut(s)	407, 480
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	58, 199
BssMI	GATC	3 cut(s)	115, 412, 472
Bst2UI	CCWGG	3 cut(s)	60, 200, 272
Bst4CI	ACNGT	2 cut(s)	47, 440
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	358, 468
BstF5I	GGATG	4 cut(s)	68, 265, 391, 430
BstKTI	GATC	3 cut(s)	118, 415, 475
BstMAI	GTCTC	2 cut(s)	248, 323
BstMBI	GATC	3 cut(s)	115, 412, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 167, 173
BstNI	CCWGG	3 cut(s)	60, 200, 272
BstSCI	CCNGG	3 cut(s)	58, 198, 270
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	170, 179, 491
BstX2I	RGATCY	3 cut(s)	115, 412, 472
BstYI	RGATCY	3 cut(s)	115, 412, 472
BsuRI	GGCC	1 cut(s)	526
BtsCI	GGATG	4 cut(s)	68, 265, 391, 430
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	248, 524, 525
Csp6I	GTAC	3 cut(s)	355, 485, 552
CviJI	RGCY	7 cut(s)	7, 135, 161, 364, 447, 482, 526
CviKI_1	RGCY	7 cut(s)	7, 135, 161, 364, 447, 482, 526
CviQI	GTAC	3 cut(s)	355, 485, 552
DdeI	CTNAG	2 cut(s)	358, 468
DpnI	GATC	3 cut(s)	117, 414, 474
DpnII	GATC	3 cut(s)	115, 412, 472
EciI	GGCGGA	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	524, 525
EcoRII	CCWGG	3 cut(s)	58, 198, 270
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	248
FaiI	YATR	3 cut(s)	55, 237, 306
FaqI	GGGAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	8, 159, 168, 480
FokI	GGATG	4 cut(s)	75, 272, 398, 437
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	4 cut(s)	8, 159, 168, 480
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	4 cut(s)	8, 159, 168, 480
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	2 cut(s)	23, 393
HaeIII	GGCC	1 cut(s)	526
HinfI	GANTC	6 cut(s)	101, 218, 281, 296, 377, 464
HphI	GGTGA	1 cut(s)	530
Hpy188III	TCNNGA	5 cut(s)	152, 188, 251, 401, 410
HpyAV	CCTTC	4 cut(s)	136, 378, 515, 539
HpyCH4III	ACNGT	2 cut(s)	47, 440
HpyCH4V	TGCA	4 cut(s)	72, 84, 167, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 167, 173
HpyF3I	CTNAG	2 cut(s)	358, 468
Kzo9I	GATC	3 cut(s)	115, 412, 472
LmnI	GCTCC	2 cut(s)	4, 412
Lsp1109I	GCAGC	3 cut(s)	170, 179, 491
LweI	GCATC	5 cut(s)	179, 193, 317, 323, 394
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	117, 414, 474
MboI	GATC	3 cut(s)	115, 412, 472
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	3 cut(s)	115, 412, 472
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	95, 458
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	21, 256, 376, 415, 463, 487
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	96, 429
MspA1I	CMGCKG	3 cut(s)	135, 161, 482
MspR9I	CCNGG	3 cut(s)	60, 200, 272
MvaI	CCWGG	3 cut(s)	60, 200, 272
MwoI	GCNNNNNNNGC	3 cut(s)	164, 167, 173
NdeII	GATC	3 cut(s)	115, 412, 472
NlaIV	GGNNCC	3 cut(s)	6, 526, 527
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	218, 281, 296, 377
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	9, 160, 169, 481
PleI	GAGTC	2 cut(s)	95, 458
PpsI	GAGTC	2 cut(s)	95, 458
Psp6I	CCWGG	3 cut(s)	58, 198, 270
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	3 cut(s)	58, 198, 270
PspN4I	GGNNCC	3 cut(s)	6, 526, 527
PspOMI	GGGCCC	1 cut(s)	524
PspPI	GGNCC	3 cut(s)	248, 524, 525
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	3 cut(s)	115, 412, 472
PvuII	CAGCTG	3 cut(s)	135, 161, 482
RsaI	GTAC	3 cut(s)	356, 486, 553
RsaNI	GTAC	3 cut(s)	355, 485, 552
SaqAI	TTAA	2 cut(s)	96, 429
SatI	GCNGC	4 cut(s)	8, 159, 168, 480
Sau3AI	GATC	3 cut(s)	115, 412, 472
Sau96I	GGNCC	3 cut(s)	248, 524, 525
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	2 cut(s)	95, 458
ScrFI	CCNGG	3 cut(s)	60, 200, 272
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	5 cut(s)	137, 147, 163, 449, 484
SfaNI	GCATC	5 cut(s)	179, 193, 317, 323, 394
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	105, 326
SmoI	CTYRAG	2 cut(s)	105, 326
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	8, 32
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	3 cut(s)	58, 198, 270
TaaI	ACNGT	2 cut(s)	47, 440
TasI	AATT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	354, 484
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	4 cut(s)	218, 281, 296, 377
Tru1I	TTAA	2 cut(s)	96, 429
Tru9I	TTAA	2 cut(s)	96, 429
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	158, 167, 479
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.