Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009578.1

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

256 .. 759

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgaaggaaagactggcccaagaactaggagtcatggctaagcaggtaagcaaatggtttgaaaatgctcgccattgtgtgaaagcaggtctggctgtgcctcaagctatgagaaaacaacctaaccaagcagagactaatatcagagatgctgatcacgatggagctcagaagaatgaatcaccagggacagatgatactgtggcaggttgctgcagtcaggatgtgaaggataataaattggcgactccaaaaagcagtaaagcgaagactagtactccaaagggtagaaagaggaaatcaaggttggatcctgggggatcggatcttgatgaaaaatttaagacaccaccagaaactagtaaaggtggtcgagttacaagacgacggaaatctgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

134

Amino Acids

14.66

Weight (kDa)

9.93

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	34, 77, 197
AclWI	GGATC	4 cut(s)	305, 318, 328, 333
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	62
AhlI	ACTAGT	2 cut(s)	272, 359
AjnI	CCWGG	2 cut(s)	184, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	2 cut(s)	107, 167
AluI	AGCT	2 cut(s)	107, 167
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	4 cut(s)	305, 318, 328, 333
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	186, 315
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	2 cut(s)	272, 359
BfaI	CTAG	3 cut(s)	26, 273, 360
BfmI	CTRYAG	1 cut(s)	214
BfuAI	ACCTGC	3 cut(s)	34, 77, 197
BisI	GCNGC	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	186, 315
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	186, 315
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	185, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	186, 315
BseDI	CCNNGG	2 cut(s)	185, 314
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	154, 310, 320, 325
Bsp1720I	GCTNAGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	218
BspMI	ACCTGC	3 cut(s)	34, 77, 197
BspPI	GGATC	4 cut(s)	305, 318, 328, 333
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	185, 314
BssMI	GATC	4 cut(s)	154, 310, 320, 325
Bst2UI	CCWGG	2 cut(s)	186, 315
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	39, 168
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	157, 313, 323, 328
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	154, 310, 320, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	186, 315
BstSCI	CCNGG	2 cut(s)	184, 313
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	310, 325
BstYI	RGATCY	2 cut(s)	310, 325
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	229
BveI	ACCTGC	3 cut(s)	34, 77, 197
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	5 cut(s)	17, 38, 95, 107, 167
CviKI_1	RGCY	5 cut(s)	17, 38, 95, 107, 167
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	2 cut(s)	39, 168
DpnI	GATC	4 cut(s)	156, 312, 322, 327
DpnII	GATC	4 cut(s)	154, 310, 320, 325
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	184, 313
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 110
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	26, 273, 360
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	3 cut(s)	30, 179, 247
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	3 cut(s)	146, 171, 325
Hpy188III	TCNNGA	3 cut(s)	158, 221, 329
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	39, 168
Hsp92II	CATG	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	154, 310, 320, 325
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	26, 273, 360
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	4 cut(s)	156, 312, 322, 327
MboI	GATC	4 cut(s)	154, 310, 320, 325
MboII	GAAGA	2 cut(s)	184, 280
MflI	RGATCY	2 cut(s)	310, 325
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	239, 338
MlyI	GAGTC	2 cut(s)	39, 241
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	2 cut(s)	111, 288
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	186, 315
MvaI	CCWGG	2 cut(s)	186, 315
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	4 cut(s)	154, 310, 320, 325
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	38, 241
PpsI	GAGTC	2 cut(s)	38, 241
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	184, 313
PspGI	CCWGG	2 cut(s)	184, 313
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	310, 325
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	4 cut(s)	154, 310, 320, 325
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	2 cut(s)	39, 241
ScrFI	CCNGG	2 cut(s)	186, 315
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	8 cut(s)	48, 91, 109, 124, 169, 211, 308, 370
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SpeI	ACTAGT	2 cut(s)	272, 359
Sse9I	AATT	2 cut(s)	239, 338
SspMI	CTAG	3 cut(s)	26, 273, 360
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	184, 313
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	239, 338
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	3 cut(s)	17, 192, 348
TspGWI	ACGGA	1 cut(s)	403
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	3 cut(s)	26, 273, 360
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.