Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000121.1

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1542

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000121.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 943 bp

ggtactgccttgtgaaggtgtgaaaaagactttggaacagacaaataatgtgaattctggaacttcatatagtgaaccagcagaagagaaccagaatttgggctctgattttgtacaagatgaaccattacaaactattatcccagtagccagctgtggtggcaacgaacagttgcaggtggttaatgaagttgcgagtgttacttctcttagtgaacaagcgggactgcctcttgaagctgtgagcaagacttgtcagactgaaaaactttcatgctatctccaaactgcatcggatcagatcaatgaatctggttcaggaagtgtaccttgtgaaccacaggaacagagagatcagcttggccttttaccttcccaaaatgatcaagttaaaactggcactgcagtatccagctccattatttctgaacaatcgggcccttctgttgaagagatgaagaattctgttattgggcatttggaaccaccccttgaagatgcaagcaaggaccatactgatgaactaatcaaaccacacacgaacaatgcgccccaaaattctagtcttgagccatcagaaacagctgacagagttctgcgctcaaggacggcggagaaacctgaagctcctgaattaagtaataatgttgcaacacttgaatcaagtaatagtgttgctaatgtaagcaatgagaaagagggaaaaaggaagaagagaaagaagaaacacggggaaagagttgcagctgatgaattttcaaggatcaggtcacatctgagatattttctgaaccggataaactatgagaaatctcttattgatgcttattctggtgaaggttggaaaggaaacagcctagaaaaaataaggccagagaaggagcttcaacgagctacttctgaaatacttcgacgcaaattgaaaataagagatctttttcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

314

Amino Acids

34.57

Weight (kDa)

5.24

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	2 cut(s)	222, 612
AclWI	GGATC	2 cut(s)	304, 771
AcsI	RAATTY	5 cut(s)	53, 95, 461, 557, 753
AcuI	CTGAAG	1 cut(s)	643
AfaI	GTAC	3 cut(s)	4, 115, 328
AfiI	CCNNNNNNNGG	2 cut(s)	15, 98
AgsI	TTSAA	8 cut(s)	237, 450, 495, 660, 760, 888, 923, 942
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 81, 113
AluBI	AGCT	9 cut(s)	154, 240, 359, 415, 585, 627, 747, 884, 894
AluI	AGCT	9 cut(s)	154, 240, 359, 415, 585, 627, 747, 884, 894
AlwI	GGATC	2 cut(s)	304, 771
AoxI	GGCC	3 cut(s)	362, 437, 870
ApaI	GGGCCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	744
ApoI	RAATTY	5 cut(s)	53, 95, 461, 557, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
Asp700I	GAANNNNTTC	1 cut(s)	907
AspLEI	GCGC	2 cut(s)	551, 601
AspS9I	GGNCC	3 cut(s)	437, 438, 509
AsuHPI	GGTGA	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	441
BaeI	ACNNNNGTAYC	2 cut(s)	391, 424
BanII	GRGCYC	2 cut(s)	105, 441
BbvI	GCAGC	1 cut(s)	756
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	383
BfaI	CTAG	2 cut(s)	562, 858
BfmI	CTRYAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	932
BisI	GCNGC	1 cut(s)	745
BlsI	GCNGC	1 cut(s)	746
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	3 cut(s)	437, 438, 509
BmiI	GGNNCC	2 cut(s)	439, 484
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	300, 488, 812
BmuI	ACTGGG	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	587, 588
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 98
Bse1I	ACTGG	2 cut(s)	144, 401
Bse3DI	GCAATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	15, 98
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	144, 401
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	756
BshFI	GGCC	3 cut(s)	364, 439, 872
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	15, 98
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	364, 439, 872
Bsp120I	GGGCCC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	105, 441
Bsp1407I	TGTACA	1 cut(s)	113
Bsp143I	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
BspACI	CCGC	2 cut(s)	222, 612
BspANI	GGCC	3 cut(s)	364, 439, 872
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	439, 484
BspMAI	CTGCAG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	304, 771
BsrDI	GCAATG	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	144, 401
BssMI	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	3 cut(s)	79, 445, 708
BstAUI	TGTACA	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	152, 503
BstDEI	CTNAG	2 cut(s)	210, 777
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	551, 601
BstKTI	GATC	6 cut(s)	299, 304, 356, 386, 766, 935
BstMBI	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	932
BstYI	RGATCY	1 cut(s)	932
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	364, 439, 872
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	152, 503
CfoI	GCGC	2 cut(s)	551, 601
Cfr13I	GGNCC	3 cut(s)	437, 438, 509
CseI	GACGC	1 cut(s)	922
Csp6I	GTAC	3 cut(s)	3, 114, 327
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	3 cut(s)	3, 114, 327
DdeI	CTNAG	2 cut(s)	210, 777
DpnI	GATC	6 cut(s)	298, 303, 355, 385, 765, 934
DpnII	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
Eam1104I	CTCTTC	3 cut(s)	79, 445, 708
EarI	CTCTTC	3 cut(s)	79, 445, 708
EciI	GGCGGA	1 cut(s)	627
Eco24I	GRGCYC	2 cut(s)	105, 441
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRI	GAATTC	2 cut(s)	53, 461
EcoT38I	GRGCYC	2 cut(s)	105, 441
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	68, 70, 275, 514, 805
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	745
FriOI	GRGCYC	2 cut(s)	105, 441
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	2 cut(s)	562, 858
GlaI	GCGC	2 cut(s)	550, 600
GluI	GCNGC	1 cut(s)	745
HaeIII	GGCC	3 cut(s)	364, 439, 872
HapII	CCGG	1 cut(s)	794
HgaI	GACGC	1 cut(s)	922
HhaI	GCGC	2 cut(s)	551, 601
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	549, 599
HinP1I	GCGC	2 cut(s)	549, 599
HinfI	GANTC	2 cut(s)	309, 660
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	1 cut(s)	846
Hpy166II	GTNNAC	4 cut(s)	75, 216, 327, 336
Hpy188I	TCNGA	9 cut(s)	107, 259, 296, 301, 428, 578, 778, 790, 902
Hpy188III	TCNNGA	5 cut(s)	58, 234, 319, 567, 630
Hpy8I	GTNNAC	4 cut(s)	75, 216, 327, 336
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	5 cut(s)	9, 382, 451, 831, 872
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	6 cut(s)	176, 291, 405, 501, 651, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	210, 777
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	549, 599
Ksp22I	TGATCA	1 cut(s)	383
Kzo9I	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
LmnI	GCTCC	3 cut(s)	420, 632, 881
Lsp1109I	GCAGC	1 cut(s)	756
LweI	GCATC	3 cut(s)	300, 488, 812
MaeI	CTAG	2 cut(s)	562, 858
MaeIII	GTNAC	2 cut(s)	200, 769
MalI	GATC	6 cut(s)	298, 303, 355, 385, 765, 934
MboI	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
MboII	GAAGA	7 cut(s)	96, 462, 470, 507, 722, 725, 734
MflI	RGATCY	1 cut(s)	932
MhlI	GDGCHC	2 cut(s)	105, 441
MluCI	AATT	7 cut(s)	53, 95, 461, 557, 633, 753, 918
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	2 cut(s)	241, 692
MroXI	GAANNNNTTC	1 cut(s)	907
MseI	TTAA	3 cut(s)	184, 391, 636
MslI	CAYNNNNRTG	1 cut(s)	517
MspA1I	CMGCKG	3 cut(s)	154, 585, 747
MspI	CCGG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	439, 484
NmuCI	GTSAC	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	907
PfeI	GAWTC	2 cut(s)	309, 660
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	439, 484
PspOMI	GGGCCC	1 cut(s)	437
PspPI	GGNCC	3 cut(s)	437, 438, 509
PstI	CTGCAG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	932
PvuII	CAGCTG	3 cut(s)	154, 585, 747
RsaI	GTAC	3 cut(s)	4, 115, 328
RsaNI	GTAC	3 cut(s)	3, 114, 327
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	184, 391, 636
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	6 cut(s)	296, 301, 353, 383, 763, 932
Sau96I	GGNCC	3 cut(s)	437, 438, 509
SduI	GDGCHC	2 cut(s)	105, 441
SfaNI	GCATC	3 cut(s)	300, 488, 812
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	567, 602
SmoI	CTYRAG	2 cut(s)	567, 602
Sse9I	AATT	7 cut(s)	53, 95, 461, 557, 633, 753, 918
SsiI	CCGC	2 cut(s)	222, 612
SspMI	CTAG	2 cut(s)	562, 858
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	911
TasI	AATT	7 cut(s)	53, 95, 461, 557, 633, 753, 918
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	309, 660
Tru1I	TTAA	3 cut(s)	184, 391, 636
Tru9I	TTAA	3 cut(s)	184, 391, 636
TscAI	CASTG	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	744
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	8 cut(s)	55, 136, 202, 262, 322, 471, 535, 766
TspRI	CASTG	1 cut(s)	407
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	5 cut(s)	53, 95, 461, 557, 753
XmnI	GAANNNNTTC	1 cut(s)	907
XspI	CTAG	2 cut(s)	562, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.