Rmu_ssc0000481.1_g000002

homeobox protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000481.1
Physical Location & Seq
Forward (+)
13859 .. 17267
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000481.1_g000002.1.cds

Sequence Viewer

Length: 1185 bp
atgtttaatgtagttagattcggcatgcgaagcactcatgctagattcgacatttactgtgtggttacgaaaagtgatttcaatcctgatgctccagatcccacagaggatgttaagcaggacagttcaagctctgattttacatctgactctgaggatctcgcagctgtactagatgaggataataagtcttttgaaaatggtgaagggccccagtcatctttgttggaaggaagtacgcttcttacaggctctggtgaaaaaagttctaaacgtgggcagaagagacattccataaaagatgagatatcatctttattagagtcagattctggccaagatggttcaacacctgtttctgggaaaaggcacgtagagaggctggactacaaaaagctgcatgatgaggaatatggaaatattcctacaagtgatgatgaagattataatgaaactgctgcacctaggaaaaggaagaaaggcactggacaagtctctccagcgtcactaaaaggaaaaccgtcaaccattaagaatggagtaacctccaaagatataaaagatgatccagacaagaatgagcatactcctagaagaacacctcgacgaaagtcaagtgctaaagataacagcagttcaccaaatgaatcgcttaaaagctctcctaagtctggttctactagtgggagagctagagcatcaaaatatagaagactcggggaagctgtaactcagcaactctatgcatccttcaaggaaaatcaatacccagaccgaagtatgaaggaaagactggcccaagaactaggagtcatggctaagcaggtaagcaaatggtttgaaaatgctcgccattgtgtgaaagcaggtctggctgtgcctcaagctatgagaaaacaacctaaccaagcagagactaatatcagagatgctgatcacgatggagctcagaagaatgaatcaccagggacagatgatactgtggcaggttgctgcagtcaggatgtgaaggataataaattggcgactccaaaaagcagtagagcgaagactagtactccaaagggtagaaagaggaaatcaaggttggatcctgggggatcggatcttgatgaaaaatttaagacaccaccagaaactagtaaaggtggtcgagttacaagacgacggaaatctgttgcttga

Protein Analysis

394

Amino Acids

43.29

Weight (kDa)

9.31

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
Acc36I ACCTGC 3 cut(s) 814, 857, 977
AclWI GGATC 7 cut(s) 92, 165, 560, 1085, 1098, 1108, 1113
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 1118
AfaI GTAC 3 cut(s) 171, 238, 1057
AfiI CCNNNNNNNGG 2 cut(s) 359, 671
AgsI TTSAA 6 cut(s) 82, 129, 197, 348, 754, 842
AhlI ACTAGT 3 cut(s) 680, 1052, 1139
AjnI CCWGG 2 cut(s) 964, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
AluBI AGCT 8 cut(s) 132, 167, 397, 660, 692, 725, 887, 947
AluI AGCT 8 cut(s) 132, 167, 397, 660, 692, 725, 887, 947
Alw21I GWGCWC 1 cut(s) 949
Alw26I GTCTC 3 cut(s) 280, 499, 908
AlwI GGATC 7 cut(s) 92, 165, 560, 1085, 1098, 1108, 1113
AlwNI CAGNNNCTG 2 cut(s) 254, 332
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 3 cut(s) 209, 334, 795
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 4 cut(s) 164, 397, 458, 993
ApoI RAATTY 1 cut(s) 1118
AspA2I CCTAGG 1 cut(s) 464
AspS9I GGNCC 3 cut(s) 209, 210, 796
AsuHPI GGTGA 4 cut(s) 215, 269, 630, 954
AvaI CYCGRG 1 cut(s) 716
AvrII CCTAGG 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 336
BamHI GGATCC 1 cut(s) 1090
BanII GRGCYC 2 cut(s) 213, 949
BbsI GAAGAC 2 cut(s) 718, 1055
Bbv12I GWGCWC 1 cut(s) 949
BbvI GCAGC 4 cut(s) 176, 384, 445, 980
BccI CCATC 2 cut(s) 335, 935
BciT130I CCWGG 2 cut(s) 966, 1095
BclI TGATCA 1 cut(s) 934
BcoDI GTCTC 3 cut(s) 280, 499, 908
BcuI ACTAGT 3 cut(s) 680, 1052, 1139
BfaI CTAG 9 cut(s) 42, 173, 465, 591, 681, 693, 806, 1053, 1140
BfmI CTRYAG 1 cut(s) 994
BfuAI ACCTGC 3 cut(s) 814, 857, 977
BisI GCNGC 4 cut(s) 165, 398, 459, 994
BlnI CCTAGG 1 cut(s) 464
BlpI GCTNAGC 1 cut(s) 819
BlsI GCNGC 4 cut(s) 166, 399, 460, 995
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 2 cut(s) 966, 1095
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 209, 210, 796
BmiI GGNNCC 3 cut(s) 211, 212, 1092
BmrFI CCNGG 2 cut(s) 966, 1095
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 4 cut(s) 79, 707, 755, 919
BmuI ACTGGG 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 610
BpiI GAAGAC 2 cut(s) 718, 1055
BpmI CTGGAG 2 cut(s) 78, 483
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 373
BsaBI GATNNNNATC 2 cut(s) 81, 933
BsaJI CCNNGG 3 cut(s) 464, 965, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 671
Bse1I ACTGG 3 cut(s) 214, 490, 798
Bse8I GATNNNNATC 2 cut(s) 81, 933
BseBI CCWGG 2 cut(s) 966, 1095
BseDI CCNNGG 3 cut(s) 464, 965, 1094
BseGI GGATG 3 cut(s) 115, 746, 1009
BseJI GATNNNNATC 2 cut(s) 81, 933
BseLI CCNNNNNNNGG 2 cut(s) 359, 671
BseMII CTCAG 3 cut(s) 144, 746, 962
BseNI ACTGG 3 cut(s) 214, 490, 798
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 176, 384, 445, 980
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 3 cut(s) 211, 336, 797
BsiHKAI GWGCWC 1 cut(s) 949
BsiHKCI CYCGRG 1 cut(s) 716
BslFI GGGAC 1 cut(s) 982
BslI CCNNNNNNNGG 2 cut(s) 359, 671
BsmAI GTCTC 3 cut(s) 280, 499, 908
BsmFI GGGAC 1 cut(s) 982
BsnI GGCC 3 cut(s) 211, 336, 797
BsoBI CYCGRG 1 cut(s) 716
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 213, 949
Bsp143I GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
Bsp1720I GCTNAGC 1 cut(s) 819
BspANI GGCC 3 cut(s) 211, 336, 797
BspCNI CTCAG 3 cut(s) 145, 745, 961
BspLI GGNNCC 3 cut(s) 211, 212, 1092
BspMAI CTGCAG 1 cut(s) 998
BspMI ACCTGC 3 cut(s) 814, 857, 977
BspPI GGATC 7 cut(s) 92, 165, 560, 1085, 1098, 1108, 1113
BsrI ACTGG 3 cut(s) 214, 490, 798
BssECI CCNNGG 3 cut(s) 464, 965, 1094
BssMI GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 966, 1095
Bst4CI ACNGT 4 cut(s) 59, 125, 522, 982
Bst6I CTCTTC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 26, 850
BstDEI CTNAG 5 cut(s) 153, 666, 732, 819, 948
BstF5I GGATG 3 cut(s) 115, 746, 1009
BstKTI GATC 7 cut(s) 100, 160, 568, 937, 1093, 1103, 1108
BstMAI GTCTC 3 cut(s) 280, 499, 908
BstMBI GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
BstMWI GCNNNNNNNGC 2 cut(s) 30, 872
BstNI CCWGG 2 cut(s) 966, 1095
BstNSI RCATGY 1 cut(s) 28
BstPAI GACNNNNGTC 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 964, 1093
BstSFI CTRYAG 1 cut(s) 994
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 176, 384, 445, 980
BstV2I GAAGAC 2 cut(s) 718, 1055
BstX2I RGATCY 4 cut(s) 97, 157, 1090, 1105
BstYI RGATCY 4 cut(s) 97, 157, 1090, 1105
BsuRI GGCC 3 cut(s) 211, 336, 797
BtsCI GGATG 3 cut(s) 115, 746, 1009
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 3 cut(s) 814, 857, 977
Cac8I GCNNGC 2 cut(s) 26, 850
CaiI CAGNNNCTG 2 cut(s) 254, 332
Cfr13I GGNCC 3 cut(s) 209, 210, 796
CseI GACGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 170, 237, 1056
CviAII CATG 4 cut(s) 25, 38, 401, 814
CviQI GTAC 3 cut(s) 170, 237, 1056
DdeI CTNAG 5 cut(s) 153, 666, 732, 819, 948
DpnI GATC 7 cut(s) 99, 159, 567, 936, 1092, 1102, 1107
DpnII GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 947
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 2 cut(s) 213, 949
Eco32I GATATC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 947
Eco88I CYCGRG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 947
EcoO109I RGGNCCY 2 cut(s) 209, 210
EcoRII CCWGG 2 cut(s) 964, 1093
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 2 cut(s) 213, 949
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 4 cut(s) 28, 41, 404, 817
FaqI GGGAC 1 cut(s) 982
FatI CATG 4 cut(s) 24, 37, 400, 813
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 4 cut(s) 165, 398, 459, 994
FokI GGATG 3 cut(s) 122, 733, 1016
FriOI GRGCYC 2 cut(s) 213, 949
Fsp4HI GCNGC 4 cut(s) 165, 398, 459, 994
FspBI CTAG 9 cut(s) 42, 173, 465, 591, 681, 693, 806, 1053, 1140
GluI GCNGC 4 cut(s) 165, 398, 459, 994
GsuI CTGGAG 2 cut(s) 78, 483
HaeIII GGCC 3 cut(s) 211, 336, 797
HgaI GACGC 1 cut(s) 492
Hin1II CATG 4 cut(s) 28, 41, 404, 817
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HphI GGTGA 4 cut(s) 215, 269, 630, 954
Hpy166II GTNNAC 2 cut(s) 525, 638
Hpy188I TCNGA 7 cut(s) 136, 148, 154, 328, 926, 951, 1105
Hpy188III TCNNGA 6 cut(s) 86, 95, 569, 938, 1001, 1109
Hpy8I GTNNAC 2 cut(s) 525, 638
Hpy99I CGWCG 2 cut(s) 609, 1170
HpyAV CCTTC 5 cut(s) 200, 224, 760, 778, 1003
HpyCH4III ACNGT 4 cut(s) 59, 125, 522, 982
HpyCH4IV ACGT 2 cut(s) 274, 372
HpyCH4V TGCA 4 cut(s) 400, 461, 746, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 872
HpyF3I CTNAG 5 cut(s) 153, 666, 732, 819, 948
HpySE526I ACGT 2 cut(s) 274, 372
Hsp92II CATG 4 cut(s) 28, 41, 404, 817
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
LmnI GCTCC 2 cut(s) 97, 944
Lsp1109I GCAGC 4 cut(s) 176, 384, 445, 980
LweI GCATC 4 cut(s) 79, 707, 755, 919
MaeI CTAG 9 cut(s) 42, 173, 465, 591, 681, 693, 806, 1053, 1140
MaeII ACGT 2 cut(s) 274, 372
MaeIII GTNAC 5 cut(s) 64, 504, 541, 727, 1156
MalI GATC 7 cut(s) 99, 159, 567, 936, 1092, 1102, 1107
MboI GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
MboII GAAGA 7 cut(s) 295, 452, 487, 606, 723, 964, 1060
MflI RGATCY 4 cut(s) 97, 157, 1090, 1105
MhlI GDGCHC 2 cut(s) 213, 949
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 2 cut(s) 1019, 1118
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 5 cut(s) 143, 332, 708, 819, 1021
MmeI TCCRAC 2 cut(s) 207, 1068
MnlI CCTC 9 cut(s) 100, 148, 172, 372, 400, 556, 612, 891, 1068
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 748
MscI TGGCCA 1 cut(s) 336
MseI TTAA 5 cut(s) 6, 114, 531, 654, 1122
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 966, 1095
MvaI CCWGG 2 cut(s) 966, 1095
MwoI GCNNNNNNNGC 2 cut(s) 30, 872
NdeII GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
NlaIII CATG 4 cut(s) 28, 41, 404, 817
NlaIV GGNNCC 3 cut(s) 211, 212, 1092
NmuCI GTSAC 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PfeI GAWTC 5 cut(s) 18, 45, 329, 647, 959
PkrI GCNGC 4 cut(s) 166, 399, 460, 995
PleI GAGTC 5 cut(s) 143, 331, 708, 818, 1021
PpsI GAGTC 5 cut(s) 143, 331, 708, 818, 1021
Ppu21I YACGTR 1 cut(s) 373
PshAI GACNNNNGTC 1 cut(s) 610
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 949
Psp6I CCWGG 2 cut(s) 964, 1093
PspGI CCWGG 2 cut(s) 964, 1093
PspN4I GGNNCC 3 cut(s) 211, 212, 1092
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 3 cut(s) 209, 210, 796
PstI CTGCAG 1 cut(s) 998
PstNI CAGNNNCTG 2 cut(s) 254, 332
PsuI RGATCY 4 cut(s) 97, 157, 1090, 1105
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 3 cut(s) 171, 238, 1057
RsaNI GTAC 3 cut(s) 170, 237, 1056
SacI GAGCTC 1 cut(s) 949
SaqAI TTAA 5 cut(s) 6, 114, 531, 654, 1122
SatI GCNGC 4 cut(s) 165, 398, 459, 994
Sau3AI GATC 7 cut(s) 97, 157, 565, 934, 1090, 1100, 1105
Sau96I GGNCC 3 cut(s) 209, 210, 796
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 5 cut(s) 143, 332, 708, 819, 1021
ScrFI CCNGG 2 cut(s) 966, 1095
SduI GDGCHC 2 cut(s) 213, 949
SfaNI GCATC 4 cut(s) 79, 707, 755, 919
SfcI CTRYAG 1 cut(s) 994
SmlI CTYRAG 1 cut(s) 882
SmoI CTYRAG 1 cut(s) 882
SpeI ACTAGT 3 cut(s) 680, 1052, 1139
SphI GCATGC 1 cut(s) 28
Sse9I AATT 2 cut(s) 1019, 1118
SspI AATATT 1 cut(s) 421
SspMI CTAG 9 cut(s) 42, 173, 465, 591, 681, 693, 806, 1053, 1140
SstI GAGCTC 1 cut(s) 949
StyD4I CCNGG 2 cut(s) 964, 1093
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 4 cut(s) 59, 125, 522, 982
TaiI ACGT 2 cut(s) 277, 375
TaqI TCGA 3 cut(s) 48, 604, 1153
TaqII GACCGA 1 cut(s) 789
TasI AATT 2 cut(s) 1019, 1118
TatI WGTACW 2 cut(s) 169, 1055
TfiI GAWTC 5 cut(s) 18, 45, 329, 647, 959
Tru1I TTAA 5 cut(s) 6, 114, 531, 654, 1122
Tru9I TTAA 5 cut(s) 6, 114, 531, 654, 1122
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 4 cut(s) 164, 397, 458, 993
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 6 cut(s) 453, 465, 660, 797, 972, 1128
TspGWI ACGGA 1 cut(s) 1183
TspRI CASTG 1 cut(s) 490
XapI RAATTY 1 cut(s) 1118
XceI RCATGY 1 cut(s) 28
XmaJI CCTAGG 1 cut(s) 464
XspI CTAG 9 cut(s) 42, 173, 465, 591, 681, 693, 806, 1053, 1140
ZrmI AGTACT 1 cut(s) 1057
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.