Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

9694785 .. 9703060

Gene Structure 8276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3219 bp

ATGGCTGATGCTGCACCGCCGGATATTCCTCTGGAATGTGTGAGCAGTCAAACTGCAAAATGCCAAGAAGAAAGTACGTCAGGACAGACACATGACATTGGTTCAGAAAGCGGATATAGTGAACCAACCAAGCAAAAGATTGGTTGTGATGTTCTTCAAAATGAGCTACAGGAAATCTGCAACACATCCAATGATGATGATCAATCACAGTCATTTGGAAATTTGACTGAGAAGTCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGTGAGCAACATTAGTCAAGGTGCTGCTGTAAACATTCTTACCAAATCAGCACACGGACATCCTTCCACCTCTGAAAACATTCAAAATGGACCATTACAAATCAGAACAGCATTATCTAGTTGTTCTACCAGTGACCACTTGCAATCATTTTCTGGCAATGTGACCAAGAATTCTCTTGCTGAAAAATTGGAACTGCCTTGTGAAGAGCCTCATGAAGATCTGGGTTGTCAGACTGGAAAAACTTCATGCTCTGAACAGATTTCAGTGGAACAGAGAAATGATTTTGGTTTCAGAACAAGAGAAGAAAAGCAGCATATCGGCTCTGATATTGTTCAAAATGAAATCTTACAAACTATTATTCCAGTATCCAGCTGTGGCAATGAACAATTGCAGTTCATTAGTGAAACTGTGAACACGACTTTTCCTAATGAACAAGCTGGAGTGCCTCCTGAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGAAACTCAATCTAGTGAACTAGCAGAAGACAAGCAGCATTTTGGCTCTGATGTTCCACAAAACGAAGGGTTACAAAGCTGTGATGGTAATGAACCATTGCAGTCATTTTGTGAAAATATGAACACAAGTTCTCTTAATGAACAAGCGGTACTGCCTTGTGAAGGTGTGAAAAAGACTTTGGAACAGACAAATAATGTGAATTCTGGAACTTCATATAGTGAACCAGCAGAAGAGAACCAGAATTTGGGCTCTGATTTTGTACAAGATGAACCATTACAAACTATTATCCCAGTAGCCAGCTGTGGTGGCAACGAACAGTTGCAGGTGGTTAATGAAGTTGCGAGTGTTACTTCTCTTAGTGAACAAGCGGGACTGCCTCTTGAAGCTGTGAGCAAGACTTGTCAGACTGAAAAACTTTCATGCTATCTCCAAACTGCATCGGATCAGATCAATGAATCTGGTTCAGGAAGTGTACCTTGTGAACCACAGGAACAGAGAGATCAGCTTGGCCTTTTACCTTCCCAAAATGATCAAGTTAAAACTGGCACTGCAGTATCCAGCTCCATTATTTCTGAACAATCGGGCCCTTCTGTTGAAGAGATGAAGAATTCTGTTATTGGGCATTTGGAACCACCCCTTGAAGATGCAAGCAAGGACCATACTGATGAACTAATCAAACCACACACGAACAATGCGCCCGAAAATTCTAGTCTTGAGCCATCAGAAACAGCGTCTGAGAATGCATCTAAAATTTCTAGCCAGTTCGGTTGCAAGGACAAGCGAAATTCAAGTTCAAGACGAAAGTCAAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACGGCGGAGAAACCTGAAGCTCCTGAATTAAGTAATAATGTTGCAACACTTGAATCAAGTAATAGTGTTGCTAATGTAAGCAATGAGAAAGAGGGAAAAAGGAAGAAGAGAAAGAAGAAACACGGGGAAAGAGTTGCAGCTGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTGGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAAATAAGGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGCAAATTGAAAATAAGAGATCTTTTTCAACGTCTTGATTCACTATGTGCCGAAGGAATGTTTCCAGAATCTTTATTTGATTCAGACGGACAGATTGACAGTGAGGATATATTCTGCGCAAAATGTGGGTCCAAGGATGTGTATGCTGATAATGACATCATACTCTGTGATGGGGCTTGTGACCGTGGATTCCACCAGTATTGTCTGGAGCCGCCTCTATTGAGTGAAGAAATTCCGCCTGATGATGACGGTTGGTTATGCCCTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATCTCTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCAGCTGTTGCAGCATCAGCAGGACAGCATCAGGAGAACAACCAGGGACTTCCATCAGATGATTCTGATGATAATGATTATGACCCTGATGGTCCAGAGACGGATGAGGAAGTCCAGGAAGCAGAATCAAGTTCCGATGAGTCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTAATGATGAGCAGTACTTAGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTCAATCCTGATGCTCCAGATCCCACAGAGGATGTTAAGCAGGACAGTTCAAGCTCTGATTTTACATCTGACTCGGAGGATCTCGCAGCTGTACTAGATGAGGATAATAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTTTGTTGGAAGGAAGTACGCTTCTTAGAGGCTCTGGTGAAAAAAGTTCTAAACGTGGGCAGAAGAGACATTCCATAAAAGATGAGATATCATCTTTATTAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCACGTAGAGAGGCTGGACTACAAAAAGCTGCATGATGAGGAATATGGAAATATTCCTACAAGTGATGATGAAGATTATAATGAAACTGCTGCACCTAGGAAAAGGAAGAAAGGCACTGGACAAGTCTCTCCAGCGTCACTAAAAGGAAAACCGTCAACCATTAAGAATGGAGTAACCTCCAAAGATATAAAAGATGATCCAGACAAGAATGAGCATACTCCTAGAAGAACACCTCGACGAAAGTCAAGTGCTAAAGATAACAGCAGTTCACCAAATGAATCGCTTAAAAGCTCTCCTAAGTCTGGTTCTACTAGTGGGAGAGCTAGAGCATCAAAATATAGAAGACTCGGGGAAGCTGTAACTCAGGTAATATGGTTCGAGTTGTTTCTACTCTTTCTAGCTTCTGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1072

Amino Acids

117.0

Weight (kDa)

4.53

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	678 - 729	7.8e-10	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2883
AarI	CACCTGC	1 cut(s)	1078
AasI	GACNNNNNNGTC	1 cut(s)	232
Acc16I	TGCGCA	1 cut(s)	2035
Acc36I	ACCTGC	1 cut(s)	1078
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AciI	CCGC	7 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153
AclWI	GGATC	6 cut(s)	1215, 1775, 2528, 2601, 2759, 2996
AcoI	YGGCCR	1 cut(s)	2770
AcuI	CTGAAG	7 cut(s)	174, 185, 285, 342, 438, 741, 861
AdeI	CACNNNGTG	1 cut(s)	1964
AfaI	GTAC	7 cut(s)	76, 915, 1026, 1239, 2477, 2607, 2674
AfiI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
AhlI	ACTAGT	1 cut(s)	3116
AjnI	CCWGG	4 cut(s)	2179, 2319, 2391, 2767
AjuI	GAANNNNNNNTTGG	4 cut(s)	926, 958, 992, 1024
Alw26I	GTCTC	5 cut(s)	240, 2369, 2444, 2716, 2935
AlwI	GGATC	6 cut(s)	1215, 1775, 2528, 2601, 2759, 2996
AlwNI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
Ama87I	CYCGRG	1 cut(s)	3152
AoxI	GGCC	5 cut(s)	1273, 1348, 1874, 2645, 2770
ApaI	GGGCCC	2 cut(s)	1352, 2649
ArsI	GACNNNNNNTTYG	2 cut(s)	2030, 2062
Asp700I	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
AspA2I	CCTAGG	1 cut(s)	2900
AspLEI	GCGC	3 cut(s)	1462, 1605, 2036
AspS9I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2046, 2369, 2645, 2646
AsuHPI	GGTGA	5 cut(s)	230, 1850, 2651, 2705, 3066
AvaI	CYCGRG	1 cut(s)	3152
AvaII	GGWCC	4 cut(s)	359, 1420, 2046, 2369
AvrII	CCTAGG	1 cut(s)	2900
BaeGI	GKGCMC	2 cut(s)	1352, 2649
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	2772
BanII	GRGCYC	3 cut(s)	1016, 1352, 2649
BbsI	GAAGAC	2 cut(s)	798, 3154
BbvI	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2820, 2881
BccI	CCATC	7 cut(s)	842, 1492, 2081, 2338, 2360, 2435, 2771
BceAI	ACGGC	1 cut(s)	1629
BciT130I	CCWGG	4 cut(s)	2181, 2321, 2393, 2769
BciVI	GTATCC	2 cut(s)	646, 1330
BclI	TGATCA	2 cut(s)	199, 1294
BcoDI	GTCTC	5 cut(s)	240, 2369, 2444, 2716, 2935
BcuI	ACTAGT	1 cut(s)	3116
BfmI	CTRYAG	2 cut(s)	167, 1314
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	2 cut(s)	646, 1330
BglII	AGATCT	4 cut(s)	487, 1574, 1936, 2236
BlnI	CCTAGG	1 cut(s)	2900
BmcAI	AGTACT	1 cut(s)	2477
Bme1390I	CCNGG	4 cut(s)	2181, 2321, 2393, 2769
Bme18I	GGWCC	4 cut(s)	359, 1420, 2046, 2369
BmeT110I	CYCGRG	1 cut(s)	3152
BmgT120I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2046, 2369, 2645, 2646
BmiI	GGNNCC	7 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648
BmrFI	CCNGG	4 cut(s)	2181, 2321, 2393, 2769
BmrI	ACTGGG	2 cut(s)	1049, 2644
BmuI	ACTGGG	2 cut(s)	1049, 2644
BoxI	GACNNNNGTC	2 cut(s)	1567, 3046
BpiI	GAAGAC	2 cut(s)	798, 3154
BpmI	CTGGAG	4 cut(s)	729, 2144, 2514, 2919
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	4 cut(s)	1499, 1591, 2211, 2468
BsaAI	YACGTR	1 cut(s)	2809
BsaBI	GATNNNNATC	2 cut(s)	198, 2517
BsaI	GGTCTC	1 cut(s)	2444
BsaJI	CCNNGG	5 cut(s)	2049, 2101, 2179, 2320, 2900
BsaWI	WCCGGW	1 cut(s)	1797
Bsc4I	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
Bse1I	ACTGG	9 cut(s)	399, 508, 632, 1055, 1312, 1525, 2113, 2650, 2926
Bse3DI	GCAATG	4 cut(s)	433, 655, 860, 1699
Bse8I	GATNNNNATC	2 cut(s)	198, 2517
BseBI	CCWGG	4 cut(s)	2181, 2321, 2393, 2769
BseDI	CCNNGG	5 cut(s)	2049, 2101, 2179, 2320, 2900
BseGI	GGATG	7 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551
BseJI	GATNNNNATC	2 cut(s)	198, 2517
BseLI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
BseMI	GCAATG	4 cut(s)	433, 655, 860, 1699
BseMII	CTCAG	5 cut(s)	219, 234, 1491, 1772, 3182
BseNI	ACTGG	9 cut(s)	399, 508, 632, 1055, 1312, 1525, 2113, 2650, 2926
BseSI	GKGCMC	2 cut(s)	1352, 2649
BseXI	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2820, 2881
BseYI	CCCAGC	1 cut(s)	2256
BsgI	GTGCAG	1 cut(s)	2880
BshFI	GGCC	5 cut(s)	1275, 1350, 1876, 2647, 2772
BsiHKCI	CYCGRG	1 cut(s)	3152
BsiSI	CCGG	2 cut(s)	20, 1798
BslFI	GGGAC	3 cut(s)	267, 1149, 2337
BslI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
BsmAI	GTCTC	5 cut(s)	240, 2369, 2444, 2716, 2935
BsmBI	CGTCTC	1 cut(s)	2369
BsmFI	GGGAC	3 cut(s)	267, 1149, 2337
BsmI	GAATGC	1 cut(s)	1510
BsnI	GGCC	5 cut(s)	1275, 1350, 1876, 2647, 2772
Bso31I	GGTCTC	1 cut(s)	2444
BsoBI	CYCGRG	1 cut(s)	3152
Bsp120I	GGGCCC	2 cut(s)	1348, 2645
Bsp1286I	GDGCHC	3 cut(s)	1016, 1352, 2649
Bsp1407I	TGTACA	1 cut(s)	1024
BspACI	CCGC	7 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153
BspANI	GGCC	5 cut(s)	1275, 1350, 1876, 2647, 2772
BspCNI	CTCAG	5 cut(s)	220, 235, 1492, 1773, 3181
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	7 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	1 cut(s)	1078
BspPI	GGATC	6 cut(s)	1215, 1775, 2528, 2601, 2759, 2996
BspQI	GCTCTTC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	2444
BsrDI	GCAATG	4 cut(s)	433, 655, 860, 1699
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	9 cut(s)	399, 508, 632, 1055, 1312, 1525, 2113, 2650, 2926
BssECI	CCNNGG	5 cut(s)	2049, 2101, 2179, 2320, 2900
BssT1I	CCWWGG	2 cut(s)	2049, 2900
Bst2UI	CCWGG	4 cut(s)	2181, 2321, 2393, 2769
Bst4CI	ACNGT	8 cut(s)	210, 679, 1083, 2018, 2102, 2168, 2561, 2958
Bst6I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
BstAPI	GCANNNNNTGC	1 cut(s)	2285
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	2809
BstC8I	GCNNGC	2 cut(s)	1063, 1414
BstDEI	CTNAG	9 cut(s)	228, 243, 1121, 1500, 1781, 2479, 2681, 3102, 3168
BstDSI	CCRYGG	1 cut(s)	2101
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	7 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551
BstHHI	GCGC	3 cut(s)	1462, 1605, 2036
BstMAI	GTCTC	5 cut(s)	240, 2369, 2444, 2716, 2935
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2285, 2288, 2294
BstNI	CCWGG	4 cut(s)	2181, 2321, 2393, 2769
BstPAI	GACNNNNGTC	2 cut(s)	1567, 3046
BstSCI	CCNGG	4 cut(s)	2179, 2319, 2391, 2767
BstSFI	CTRYAG	2 cut(s)	167, 1314
BstSLI	GKGCMC	2 cut(s)	1352, 2649
BstV1I	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2820, 2881
BstV2I	GAAGAC	2 cut(s)	798, 3154
BstX2I	RGATCY	7 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764
BstYI	RGATCY	7 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764
BsuI	GTATCC	2 cut(s)	646, 1330
BsuRI	GGCC	5 cut(s)	1275, 1350, 1876, 2647, 2772
BtgI	CCRYGG	1 cut(s)	2101
BtsCI	GGATG	7 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551
BtsI	GCAGTG	2 cut(s)	1311, 1594
BtsIMutI	CAGTG	6 cut(s)	406, 540, 1311, 1594, 2023, 2919
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	2 cut(s)	1063, 1414
CaiI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	3 cut(s)	1462, 1605, 2036
Cfr13I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2046, 2369, 2645, 2646
CseI	GACGC	3 cut(s)	1485, 1926, 2928
Csp6I	GTAC	7 cut(s)	75, 914, 1025, 1238, 2476, 2606, 2673
CspCI	CAANNNNNGTGG	2 cut(s)	2099, 2134
CviAII	CATG	5 cut(s)	92, 482, 516, 1185, 2837
CviQI	GTAC	7 cut(s)	75, 914, 1025, 1238, 2476, 2606, 2673
DdeI	CTNAG	9 cut(s)	228, 243, 1121, 1500, 1781, 2479, 2681, 3102, 3168
DraIII	CACNNNGTG	1 cut(s)	1964
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	2770
Eam1104I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EarI	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EciI	GGCGGA	2 cut(s)	1631, 2142
Eco130I	CCWWGG	2 cut(s)	2049, 2900
Eco24I	GRGCYC	3 cut(s)	1016, 1352, 2649
Eco31I	GGTCTC	1 cut(s)	2444
Eco32I	GATATC	1 cut(s)	2745
Eco47I	GGWCC	4 cut(s)	359, 1420, 2046, 2369
Eco57I	CTGAAG	4 cut(s)	285, 741, 1647, 2295
Eco88I	CYCGRG	1 cut(s)	3152
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoO109I	RGGNCCY	3 cut(s)	1349, 2645, 2646
EcoRI	GAATTC	3 cut(s)	439, 964, 1372
EcoRII	CCWGG	4 cut(s)	2179, 2319, 2391, 2767
EcoRV	GATATC	1 cut(s)	2745
EcoT14I	CCWWGG	2 cut(s)	2049, 2900
EcoT22I	ATGCAT	2 cut(s)	1510, 2431
EcoT38I	GRGCYC	3 cut(s)	1016, 1352, 2649
ErhI	CCWWGG	2 cut(s)	2049, 2900
Esp3I	CGTCTC	1 cut(s)	2369
FaeI	CATG	5 cut(s)	95, 485, 519, 1188, 2840
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	3 cut(s)	267, 1149, 2337
FatI	CATG	5 cut(s)	91, 481, 515, 1184, 2836
FauI	CCCGC	1 cut(s)	1126
FbaI	TGATCA	2 cut(s)	199, 1294
FokI	GGATG	7 cut(s)	172, 315, 2066, 2196, 2393, 2519, 2558
FriOI	GRGCYC	3 cut(s)	1016, 1352, 2649
FspI	TGCGCA	1 cut(s)	2035
GlaI	GCGC	3 cut(s)	1461, 1604, 2035
GsaI	CCCAGC	1 cut(s)	2260
GsuI	CTGGAG	4 cut(s)	729, 2144, 2514, 2919
HaeIII	GGCC	5 cut(s)	1275, 1350, 1876, 2647, 2772
HapII	CCGG	2 cut(s)	20, 1798
HgaI	GACGC	3 cut(s)	1485, 1926, 2928
HhaI	GCGC	3 cut(s)	1462, 1605, 2036
Hin1II	CATG	5 cut(s)	95, 485, 519, 1188, 2840
Hin6I	GCGC	3 cut(s)	1460, 1603, 2034
HinP1I	GCGC	3 cut(s)	1460, 1603, 2034
HincII	GTYRAC	1 cut(s)	2961
HindII	GTYRAC	1 cut(s)	2961
HpaII	CCGG	2 cut(s)	20, 1798
HphI	GGTGA	5 cut(s)	230, 1850, 2651, 2705, 3066
Hpy99I	CGWCG	2 cut(s)	1920, 3045
HpyCH4III	ACNGT	8 cut(s)	210, 679, 1083, 2018, 2102, 2168, 2561, 2958
HpyCH4IV	ACGT	4 cut(s)	77, 1948, 2710, 2808
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2285, 2288, 2294
HpyF3I	CTNAG	9 cut(s)	228, 243, 1121, 1500, 1781, 2479, 2681, 3102, 3168
HpySE526I	ACGT	4 cut(s)	77, 1948, 2710, 2808
Hsp92II	CATG	5 cut(s)	95, 485, 519, 1188, 2840
HspAI	GCGC	3 cut(s)	1460, 1603, 2034
Ksp22I	TGATCA	2 cut(s)	199, 1294
LguI	GCTCTTC	1 cut(s)	468
Lsp1109I	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2820, 2881
MaeII	ACGT	4 cut(s)	77, 1948, 2710, 2808
MfeI	CAATTG	2 cut(s)	248, 656
MflI	RGATCY	7 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764
MhlI	GDGCHC	3 cut(s)	1016, 1352, 2649
MlsI	TGGCCA	1 cut(s)	2772
MluNI	TGGCCA	1 cut(s)	2772
MlyI	GAGTC	5 cut(s)	2216, 2426, 2579, 2768, 3144
MmeI	TCCRAC	2 cut(s)	1826, 2643
Mox20I	TGGCCA	1 cut(s)	2772
Mph1103I	ATGCAT	2 cut(s)	1510, 2431
MroXI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
MscI	TGGCCA	1 cut(s)	2772
MseI	TTAA	9 cut(s)	900, 1095, 1302, 1640, 2217, 2550, 2967, 3090, 3217
MslI	CAYNNNNRTG	1 cut(s)	1428
Msp20I	TGGCCA	1 cut(s)	2772
MspA1I	CMGCKG	6 cut(s)	642, 1065, 1751, 2256, 2282, 2603
MspI	CCGG	2 cut(s)	20, 1798
MspR9I	CCNGG	4 cut(s)	2181, 2321, 2393, 2769
MunI	CAATTG	2 cut(s)	248, 656
Mva1269I	GAATGC	1 cut(s)	1510
MvaI	CCWGG	4 cut(s)	2181, 2321, 2393, 2769
MwoI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2285, 2288, 2294
NlaIII	CATG	5 cut(s)	95, 485, 519, 1188, 2840
NlaIV	GGNNCC	7 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648
NmuCI	GTSAC	7 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2940
NsbI	TGCGCA	1 cut(s)	2035
NsiI	ATGCAT	2 cut(s)	1510, 2431
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	1 cut(s)	1510
PdmI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
PflMI	CCANNNNNTGG	1 cut(s)	1009
PfoI	TCCNGGA	1 cut(s)	2391
PleI	GAGTC	5 cut(s)	2216, 2425, 2579, 2767, 3144
PpsI	GAGTC	5 cut(s)	2216, 2425, 2579, 2767, 3144
Ppu21I	YACGTR	1 cut(s)	2809
PshAI	GACNNNNGTC	2 cut(s)	1567, 3046
PsiI	TTATAA	1 cut(s)	2883
Psp6I	CCWGG	4 cut(s)	2179, 2319, 2391, 2767
PspFI	CCCAGC	1 cut(s)	2256
PspGI	CCWGG	4 cut(s)	2179, 2319, 2391, 2767
PspN4I	GGNNCC	7 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648
PspOMI	GGGCCC	2 cut(s)	1348, 2645
PspPI	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2046, 2369, 2645, 2646
PsrI	GAACNNNNNNTAC	2 cut(s)	897, 929
PstI	CTGCAG	1 cut(s)	1318
PstNI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
PsuI	RGATCY	7 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764
PvuII	CAGCTG	6 cut(s)	642, 1065, 1751, 2256, 2282, 2603
RsaI	GTAC	7 cut(s)	76, 915, 1026, 1239, 2477, 2607, 2674
RsaNI	GTAC	7 cut(s)	75, 914, 1025, 1238, 2476, 2606, 2673
RseI	CAYNNNNRTG	1 cut(s)	1428
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	9 cut(s)	900, 1095, 1302, 1640, 2217, 2550, 2967, 3090, 3217
Sau96I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2046, 2369, 2645, 2646
ScaI	AGTACT	1 cut(s)	2477
SchI	GAGTC	5 cut(s)	2216, 2426, 2579, 2768, 3144
ScrFI	CCNGG	4 cut(s)	2181, 2321, 2393, 2769
SduI	GDGCHC	3 cut(s)	1016, 1352, 2649
SfcI	CTRYAG	2 cut(s)	167, 1314
SinI	GGWCC	4 cut(s)	359, 1420, 2046, 2369
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	4 cut(s)	1478, 1606, 2226, 2447
SmoI	CTYRAG	4 cut(s)	1478, 1606, 2226, 2447
SpeI	ACTAGT	1 cut(s)	3116
SsiI	CCGC	7 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153
SspI	AATATT	1 cut(s)	2857
StyD4I	CCNGG	4 cut(s)	2179, 2319, 2391, 2767
StyI	CCWWGG	2 cut(s)	2049, 2900
TaaI	ACNGT	8 cut(s)	210, 679, 1083, 2018, 2102, 2168, 2561, 2958
TaiI	ACGT	4 cut(s)	80, 1951, 2713, 2811
TaqI	TCGA	3 cut(s)	1915, 3040, 3183
TatI	WGTACW	3 cut(s)	1024, 2475, 2605
TauI	GCSGC	1 cut(s)	2131
Tru1I	TTAA	9 cut(s)	900, 1095, 1302, 1640, 2217, 2550, 2967, 3090, 3217
Tru9I	TTAA	9 cut(s)	900, 1095, 1302, 1640, 2217, 2550, 2967, 3090, 3217
TscAI	CASTG	6 cut(s)	406, 540, 1318, 1594, 2023, 2926
TseFI	GTSAC	7 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2940
Tsp45I	GTSAC	7 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2940
TspGWI	ACGGA	3 cut(s)	339, 2019, 2393
TspRI	CASTG	6 cut(s)	406, 540, 1318, 1594, 2023, 2926
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	4 cut(s)	359, 1420, 2046, 2369
XagI	CCTNNNNNAGG	1 cut(s)	924
XmaJI	CCTAGG	1 cut(s)	2900
XmnI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
ZrmI	AGTACT	1 cut(s)	2477
Zsp2I	ATGCAT	2 cut(s)	1510, 2431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.