Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

10015943 .. 10024520

Gene Structure 8578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG069200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGCTGATGCTGCACCGCCGGATATTCCTCTGGAATGTGTGAGCAGTCAAACTGCAAAATGCCAAGAAGAAAGTACGTCAGGACAGACACATGACATTGGTTCAGAAAGCGGATATAGTGAACCAACCAAGCAAAAGATTGGTTGTGATATTCTTCAAAATGAGCTACAGGAAATCTGCAACGCATCCAATGATGATGATCAATCACAGTCATTTGGAAATTTGACTGAGAAGTCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGTGAGCAACATTAGTCAAGGTGCTGCTGTAAACATTCTTACCAAATCAGCACATGGACATCCTTCCACCTCTGAAAACATTCAAAATGGACCATTACAAATCAGAACAGCATTATCTAGTTGTACTACCAGTGACCACTTGCAATCATTTTCTGGCAATGTGACCAAGAATTCTCTTGCTGAAAAATTGGAACTGCCTTGTGAAGAGCCTCATGAAGATCTGGGTTGTCAGACTGGAAAAACTTCATGCTCTGAACAGATTTCAGTGGAACAGAGAAATGATTTTGGTTTCGGAACAAGAGAAGAAGAGCAGCATATCGGCTCTGATATTGTTCAAAATGAAATCTTACAAACTATTATTCCAGTATCCAGCTGTGGCAATGAACAATTGCAGTTCATTAGTGAAACTGTGAACACGACTTTTCCTAATGAACAAGCAGGAGTGCCTCCTGAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGAAACTCAATCTAGTGAACTAGCAGAAGACAAGCAGCATTTTGGCTCTGATGTTCCACAAAACGAAGGGTTACAAAGCTGTGATGGTAATGAACCATTGCAGTCATTTTGTGAAAATAGGAACACAAGTTCTCTTAATGAACAAGCGGTACTGCCTTGTGAAGGTGTGAAAAAGACTTTGGAACAGACAAATAATGTGAATTCTGGAACTTCATATAGTGAACCAGCAGAAGAGAACCAGAATTTGGGCTCTGATTTTGTACAAGATGAACCATTACAAACTATTATCCCAGTAGCCAGCTGTGGTGGCAACGAACAGTTGCAGGTGGTTAATGAAGTTGTGAGTGTTACTTCTCTTAGTGAACAAGCGGGACTGCCTCTTGAAGCTGTGAGCAAGACTTGTCAGACTGAAAAACTTTCATGCTATCTCCAGACTGCATCGGATCAGATCAATGAATCTGGTTCAGGAAGTGTACCTTGTGAACCACAGGAACAGAGAGATCAGCTTGGCCTTTTACCTTCCCAAAATGATCAAGTTAAAACTGGCACTGCAGTATCCAGCTCCATTGTTTCTGAACAATCGGGCCCTTCTGTTGAAGAGATGAAGAATTCTGTTATTGGGCATTTGGAACCACCCCTTGAAGATGCAAGCAAGGACCATACTGATGAACTAATCAAACCACACACGAACAATCAAAATTCTAGTCTTGAGCCATCAGAAACAGTGTCTGAGAATGCATCTAAAATTTCTAGCCAGTTCGGTTGCAAGGACAAGCGAAATTCAAGTTCAAGACAAAAGTCGAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACGGCGGAGAAACCTGAAGCTCCTGAATTAAGTAATAATGTTGCAACACTTGAATCAAGTAATAGTGTTGCTAATGTAAGCAATGAGAAAGAGGGAAAAAGGAAGAAGAGCAAGAAGAAACACAGGGAAAGAGTTGCAGCTGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTGGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAAATAAGGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGCAAATTGAAAATAAGAGATCTTTTTCAACGTCTTGATTCACTATGTGCCGAAGGAATGTTTCCAGAATCTTTATTTGATTCAGACGGACAGATTGACAGTGAGGATATATTCTGTGCAAAATGTGGGTCCAAGGATGTGTATGCTGATAATGACATCATACTTTGTGATGGGGCTTGTGACCGTGGATTCCACCAGTATTGTCTGGAACCGCCTCTATTGAGTGAAGAAATTCCGCCTGATGATGAGGGTTGGTTATGCCCTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATCTCTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCTGCTGTTGCAGCATCAGCAGGACAGCATCAGGAGAACAACCAGGGACTTCTATCAGATGATTCTGATGATAATGATTATGACCCTGATGGTCCAGAGACGGATGAGGAAGTCCAGGAAGCAGAATCAAGTTCCGATGAATCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTAATGATGAGCAGTACTTAGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTCAATCCTGATGCTCCAGATCCTACAGAGGATGTTAAGCAGGACAGTTCAAGCTCTGATTTTACATCTGACTCTGAGGATCTCGAAGCTGTACTAGATGAGGATAATAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTTTGTTGGAAGGAAGTACGCTTCTTAGAGGCTCTGGTGAAAAAAGTTCTAAACGTGGGCAGAAGAGACATTCCATAAAAGATGAGATATCATCTTTATTAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCATGTAGAGAGGCTGGACTACAAAAAGCTGCATGATGTGAGTGTCTTTCTAAAGTACAATTTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

955

Amino Acids

104.3

Weight (kDa)

4.37

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	676 - 727	7e-10	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1078
AasI	GACNNNNNNGTC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	1078
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AciI	CCGC	7 cut(s)	17, 111, 911, 1133, 1610, 2123, 2147
AclWI	GGATC	5 cut(s)	1215, 1769, 2522, 2595, 2753
AcoI	YGGCCR	1 cut(s)	2764
AcuI	CTGAAG	4 cut(s)	285, 741, 1641, 2289
AdeI	CACNNNGTG	1 cut(s)	1958
AfaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2471, 2601, 2668, 2855
AfiI	CCNNNNNNNGG	3 cut(s)	926, 1009, 2789
AjnI	CCWGG	4 cut(s)	2173, 2313, 2385, 2761
AjuI	GAANNNNNNNTTGG	4 cut(s)	926, 958, 992, 1024
AloI	GAACNNNNNNTCC	2 cut(s)	877, 909
Alw26I	GTCTC	4 cut(s)	240, 2363, 2438, 2710
AlwI	GGATC	5 cut(s)	1215, 1769, 2522, 2595, 2753
AlwNI	CAGNNNCTG	3 cut(s)	1493, 2432, 2762
AoxI	GGCC	5 cut(s)	1273, 1348, 1868, 2639, 2764
ApaI	GGGCCC	2 cut(s)	1352, 2643
ApeKI	GCWGC	8 cut(s)	11, 293, 580, 799, 1742, 2273, 2282, 2827
ArsI	GACNNNNNNTTYG	4 cut(s)	1453, 1485, 2024, 2056
Asp700I	GAANNNNTTC	4 cut(s)	348, 511, 1905, 2142
AspLEI	GCGC	1 cut(s)	1599
AspS9I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2040, 2363, 2639, 2640
AsuHPI	GGTGA	4 cut(s)	230, 1844, 2645, 2699
AvaII	GGWCC	4 cut(s)	359, 1420, 2040, 2363
BaeGI	GKGCMC	2 cut(s)	1352, 2643
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	2766
BanII	GRGCYC	3 cut(s)	1016, 1352, 2643
BbsI	GAAGAC	1 cut(s)	798
BbvI	GCAGC	7 cut(s)	280, 592, 811, 1754, 2260, 2294, 2814
BccI	CCATC	6 cut(s)	842, 1486, 2075, 2354, 2429, 2765
BceAI	ACGGC	1 cut(s)	1623
BciT130I	CCWGG	4 cut(s)	2175, 2315, 2387, 2763
BciVI	GTATCC	2 cut(s)	646, 1330
BclI	TGATCA	2 cut(s)	199, 1294
BcoDI	GTCTC	4 cut(s)	240, 2363, 2438, 2710
BfaI	CTAG	7 cut(s)	387, 777, 785, 1467, 1515, 1856, 2603
BfmI	CTRYAG	3 cut(s)	167, 1314, 2532
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	2 cut(s)	646, 1330
BglII	AGATCT	4 cut(s)	487, 1568, 1930, 2230
BisI	GCNGC	8 cut(s)	12, 294, 581, 800, 1743, 2274, 2283, 2828
BlsI	GCNGC	8 cut(s)	13, 295, 582, 801, 1744, 2275, 2284, 2829
BmcAI	AGTACT	1 cut(s)	2471
Bme1390I	CCNGG	4 cut(s)	2175, 2315, 2387, 2763
Bme18I	GGWCC	4 cut(s)	359, 1420, 2040, 2363
BmgT120I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2040, 2363, 2639, 2640
BmiI	GGNNCC	7 cut(s)	744, 1350, 1395, 2041, 2121, 2641, 2642
BmrFI	CCNGG	4 cut(s)	2175, 2315, 2387, 2763
BmrI	ACTGGG	2 cut(s)	1049, 2638
BmuI	ACTGGG	2 cut(s)	1049, 2638
BoxI	GACNNNNGTC	1 cut(s)	1561
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	2 cut(s)	1178, 2508
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	4 cut(s)	1493, 1585, 2205, 2462
BsaBI	GATNNNNATC	2 cut(s)	198, 2511
BsaI	GGTCTC	1 cut(s)	2438
BsaJI	CCNNGG	4 cut(s)	2043, 2095, 2173, 2314
BsaWI	WCCGGW	1 cut(s)	1791
Bsc4I	CCNNNNNNNGG	3 cut(s)	926, 1009, 2789
Bse1I	ACTGG	8 cut(s)	399, 508, 632, 1055, 1312, 1519, 2107, 2644
Bse3DI	GCAATG	4 cut(s)	433, 655, 860, 1693
Bse8I	GATNNNNATC	2 cut(s)	198, 2511
BseBI	CCWGG	4 cut(s)	2175, 2315, 2387, 2763
BseDI	CCNNGG	4 cut(s)	2043, 2095, 2173, 2314
BseGI	GGATG	7 cut(s)	185, 328, 2053, 2183, 2380, 2506, 2545
BseJI	GATNNNNATC	2 cut(s)	198, 2511
BseLI	CCNNNNNNNGG	3 cut(s)	926, 1009, 2789
BseMI	GCAATG	4 cut(s)	433, 655, 860, 1693
BseMII	CTCAG	5 cut(s)	219, 234, 1485, 1766, 2574
BseNI	ACTGG	8 cut(s)	399, 508, 632, 1055, 1312, 1519, 2107, 2644
BseSI	GKGCMC	2 cut(s)	1352, 2643
BseXI	GCAGC	7 cut(s)	280, 592, 811, 1754, 2260, 2294, 2814
BseYI	CCCAGC	1 cut(s)	2250
BshFI	GGCC	5 cut(s)	1275, 1350, 1870, 2641, 2766
BsiSI	CCGG	2 cut(s)	20, 1792
BslFI	GGGAC	3 cut(s)	267, 1149, 2331
BslI	CCNNNNNNNGG	3 cut(s)	926, 1009, 2789
BsmAI	GTCTC	4 cut(s)	240, 2363, 2438, 2710
BsmBI	CGTCTC	1 cut(s)	2363
BsmFI	GGGAC	3 cut(s)	267, 1149, 2331
BsmI	GAATGC	1 cut(s)	1504
BsnI	GGCC	5 cut(s)	1275, 1350, 1870, 2641, 2766
Bso31I	GGTCTC	1 cut(s)	2438
Bsp120I	GGGCCC	2 cut(s)	1348, 2639
Bsp1286I	GDGCHC	3 cut(s)	1016, 1352, 2643
Bsp1407I	TGTACA	1 cut(s)	1024
BspACI	CCGC	7 cut(s)	17, 111, 911, 1133, 1610, 2123, 2147
BspANI	GGCC	5 cut(s)	1275, 1350, 1870, 2641, 2766
BspCNI	CTCAG	5 cut(s)	220, 235, 1486, 1767, 2575
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	7 cut(s)	744, 1350, 1395, 2041, 2121, 2641, 2642
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	1 cut(s)	1078
BspPI	GGATC	5 cut(s)	1215, 1769, 2522, 2595, 2753
BspQI	GCTCTTC	3 cut(s)	468, 570, 1706
BspTNI	GGTCTC	1 cut(s)	2438
BsrDI	GCAATG	4 cut(s)	433, 655, 860, 1693
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	8 cut(s)	399, 508, 632, 1055, 1312, 1519, 2107, 2644
BssECI	CCNNGG	4 cut(s)	2043, 2095, 2173, 2314
BssT1I	CCWWGG	1 cut(s)	2043
Bst2UI	CCWGG	4 cut(s)	2175, 2315, 2387, 2763
Bst4CI	ACNGT	7 cut(s)	210, 679, 1083, 1489, 2012, 2096, 2555
Bst6I	CTCTTC	6 cut(s)	468, 570, 990, 1356, 1706, 2708
BstAUI	TGTACA	1 cut(s)	1024
BstC8I	GCNNGC	2 cut(s)	1063, 1414
BstDEI	CTNAG	8 cut(s)	228, 243, 1121, 1494, 1775, 2473, 2583, 2675
BstDSI	CCRYGG	1 cut(s)	2095
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	7 cut(s)	185, 328, 2053, 2183, 2380, 2506, 2545
BstHHI	GCGC	1 cut(s)	1599
BstMAI	GTCTC	4 cut(s)	240, 2363, 2438, 2710
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2279, 2282, 2288
BstNI	CCWGG	4 cut(s)	2175, 2315, 2387, 2763
BstNSI	RCATGY	1 cut(s)	2804
BstPAI	GACNNNNGTC	1 cut(s)	1561
BstSCI	CCNGG	4 cut(s)	2173, 2313, 2385, 2761
BstSFI	CTRYAG	3 cut(s)	167, 1314, 2532
BstSLI	GKGCMC	2 cut(s)	1352, 2643
BstV1I	GCAGC	7 cut(s)	280, 592, 811, 1754, 2260, 2294, 2814
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	7 cut(s)	487, 1568, 1930, 2230, 2527, 2587, 2758
BstYI	RGATCY	7 cut(s)	487, 1568, 1930, 2230, 2527, 2587, 2758
BsuI	GTATCC	2 cut(s)	646, 1330
BsuRI	GGCC	5 cut(s)	1275, 1350, 1870, 2641, 2766
BtgI	CCRYGG	1 cut(s)	2095
BtsCI	GGATG	7 cut(s)	185, 328, 2053, 2183, 2380, 2506, 2545
BtsI	GCAGTG	2 cut(s)	1311, 1588
BtsIMutI	CAGTG	6 cut(s)	406, 540, 1311, 1494, 1588, 2017
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	2 cut(s)	1063, 1414
CaiI	CAGNNNCTG	3 cut(s)	1493, 2432, 2762
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	1599
Cfr13I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2040, 2363, 2639, 2640
CseI	GACGC	1 cut(s)	1920
Csp6I	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2470, 2600, 2667, 2854
CspCI	CAANNNNNGTGG	2 cut(s)	2093, 2128
CviAII	CATG	7 cut(s)	92, 323, 482, 516, 1185, 2801, 2831
CviQI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2470, 2600, 2667, 2854
DdeI	CTNAG	8 cut(s)	228, 243, 1121, 1494, 1775, 2473, 2583, 2675
DraIII	CACNNNGTG	1 cut(s)	1958
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	2764
Eam1104I	CTCTTC	6 cut(s)	468, 570, 990, 1356, 1706, 2708
EarI	CTCTTC	6 cut(s)	468, 570, 990, 1356, 1706, 2708
EciI	GGCGGA	2 cut(s)	1625, 2136
Eco130I	CCWWGG	1 cut(s)	2043
Eco24I	GRGCYC	3 cut(s)	1016, 1352, 2643
Eco31I	GGTCTC	1 cut(s)	2438
Eco32I	GATATC	1 cut(s)	2739
Eco47I	GGWCC	4 cut(s)	359, 1420, 2040, 2363
Eco57I	CTGAAG	4 cut(s)	285, 741, 1641, 2289
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoO109I	RGGNCCY	3 cut(s)	1349, 2639, 2640
EcoRI	GAATTC	3 cut(s)	439, 964, 1372
EcoRII	CCWGG	4 cut(s)	2173, 2313, 2385, 2761
EcoRV	GATATC	1 cut(s)	2739
EcoT14I	CCWWGG	1 cut(s)	2043
EcoT22I	ATGCAT	2 cut(s)	1504, 2425
EcoT38I	GRGCYC	3 cut(s)	1016, 1352, 2643
ErhI	CCWWGG	1 cut(s)	2043
Esp3I	CGTCTC	1 cut(s)	2363
FaeI	CATG	7 cut(s)	95, 326, 485, 519, 1188, 2804, 2834
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	3 cut(s)	267, 1149, 2331
FatI	CATG	7 cut(s)	91, 322, 481, 515, 1184, 2800, 2830
FauI	CCCGC	1 cut(s)	1126
FbaI	TGATCA	2 cut(s)	199, 1294
Fnu4HI	GCNGC	8 cut(s)	12, 294, 581, 800, 1743, 2274, 2283, 2828
FokI	GGATG	7 cut(s)	172, 315, 2060, 2190, 2387, 2513, 2552
FriOI	GRGCYC	3 cut(s)	1016, 1352, 2643
Fsp4HI	GCNGC	8 cut(s)	12, 294, 581, 800, 1743, 2274, 2283, 2828
FspBI	CTAG	7 cut(s)	387, 777, 785, 1467, 1515, 1856, 2603
GlaI	GCGC	1 cut(s)	1598
GluI	GCNGC	8 cut(s)	12, 294, 581, 800, 1743, 2274, 2283, 2828
GsaI	CCCAGC	1 cut(s)	2254
GsuI	CTGGAG	2 cut(s)	1178, 2508
HaeIII	GGCC	5 cut(s)	1275, 1350, 1870, 2641, 2766
HapII	CCGG	2 cut(s)	20, 1792
HgaI	GACGC	1 cut(s)	1920
HhaI	GCGC	1 cut(s)	1599
Hin1II	CATG	7 cut(s)	95, 326, 485, 519, 1188, 2804, 2834
Hin6I	GCGC	1 cut(s)	1597
HinP1I	GCGC	1 cut(s)	1597
HpaII	CCGG	2 cut(s)	20, 1792
HphI	GGTGA	4 cut(s)	230, 1844, 2645, 2699
Hpy166II	GTNNAC	8 cut(s)	122, 301, 682, 782, 986, 1127, 1238, 1247
Hpy8I	GTNNAC	8 cut(s)	122, 301, 682, 782, 986, 1127, 1238, 1247
Hpy99I	CGWCG	1 cut(s)	1914
HpyCH4III	ACNGT	7 cut(s)	210, 679, 1083, 1489, 2012, 2096, 2555
HpyCH4IV	ACGT	3 cut(s)	77, 1942, 2704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2279, 2282, 2288
HpyF3I	CTNAG	8 cut(s)	228, 243, 1121, 1494, 1775, 2473, 2583, 2675
HpySE526I	ACGT	3 cut(s)	77, 1942, 2704
Hsp92II	CATG	7 cut(s)	95, 326, 485, 519, 1188, 2804, 2834
HspAI	GCGC	1 cut(s)	1597
Ksp22I	TGATCA	2 cut(s)	199, 1294
LguI	GCTCTTC	3 cut(s)	468, 570, 1706
LmnI	GCTCC	4 cut(s)	1331, 1630, 1879, 2527
Lsp1109I	GCAGC	7 cut(s)	280, 592, 811, 1754, 2260, 2294, 2814
MaeI	CTAG	7 cut(s)	387, 777, 785, 1467, 1515, 1856, 2603
MaeII	ACGT	3 cut(s)	77, 1942, 2704
MaeIII	GTNAC	8 cut(s)	401, 430, 834, 1111, 1583, 1767, 2090, 2180
MfeI	CAATTG	2 cut(s)	248, 656
MflI	RGATCY	7 cut(s)	487, 1568, 1930, 2230, 2527, 2587, 2758
MhlI	GDGCHC	3 cut(s)	1016, 1352, 2643
MlsI	TGGCCA	1 cut(s)	2766
MluNI	TGGCCA	1 cut(s)	2766
MlyI	GAGTC	3 cut(s)	2210, 2573, 2762
MmeI	TCCRAC	2 cut(s)	1820, 2637
Mox20I	TGGCCA	1 cut(s)	2766
Mph1103I	ATGCAT	2 cut(s)	1504, 2425
MroXI	GAANNNNTTC	4 cut(s)	348, 511, 1905, 2142
MscI	TGGCCA	1 cut(s)	2766
MseI	TTAA	6 cut(s)	900, 1095, 1302, 1634, 2211, 2544
MslI	CAYNNNNRTG	1 cut(s)	1428
Msp20I	TGGCCA	1 cut(s)	2766
MspA1I	CMGCKG	4 cut(s)	642, 1065, 1745, 2250
MspI	CCGG	2 cut(s)	20, 1792
MspR9I	CCNGG	4 cut(s)	2175, 2315, 2387, 2763
MunI	CAATTG	2 cut(s)	248, 656
Mva1269I	GAATGC	1 cut(s)	1504
MvaI	CCWGG	4 cut(s)	2175, 2315, 2387, 2763
MwoI	GCNNNNNNNGC	5 cut(s)	11, 1071, 2279, 2282, 2288
NlaIII	CATG	7 cut(s)	95, 326, 485, 519, 1188, 2804, 2834
NlaIV	GGNNCC	7 cut(s)	744, 1350, 1395, 2041, 2121, 2641, 2642
NmuCI	GTSAC	6 cut(s)	401, 430, 1583, 1767, 2090, 2180
NsiI	ATGCAT	2 cut(s)	1504, 2425
NspI	RCATGY	1 cut(s)	2804
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	1078
PciSI	GCTCTTC	3 cut(s)	468, 570, 1706
PctI	GAATGC	1 cut(s)	1504
PdmI	GAANNNNTTC	4 cut(s)	348, 511, 1905, 2142
PflMI	CCANNNNNTGG	1 cut(s)	1009
PfoI	TCCNGGA	1 cut(s)	2385
PkrI	GCNGC	8 cut(s)	13, 295, 582, 801, 1744, 2275, 2284, 2829
PleI	GAGTC	3 cut(s)	2210, 2573, 2761
PpsI	GAGTC	3 cut(s)	2210, 2573, 2761
PshAI	GACNNNNGTC	1 cut(s)	1561
Psp6I	CCWGG	4 cut(s)	2173, 2313, 2385, 2761
PspFI	CCCAGC	1 cut(s)	2250
PspGI	CCWGG	4 cut(s)	2173, 2313, 2385, 2761
PspN4I	GGNNCC	7 cut(s)	744, 1350, 1395, 2041, 2121, 2641, 2642
PspOMI	GGGCCC	2 cut(s)	1348, 2639
PspPI	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2040, 2363, 2639, 2640
PsrI	GAACNNNNNNTAC	2 cut(s)	897, 929
PstI	CTGCAG	1 cut(s)	1318
PstNI	CAGNNNCTG	3 cut(s)	1493, 2432, 2762
PsuI	RGATCY	7 cut(s)	487, 1568, 1930, 2230, 2527, 2587, 2758
PvuII	CAGCTG	4 cut(s)	642, 1065, 1745, 2250
RsaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2471, 2601, 2668, 2855
RsaNI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2470, 2600, 2667, 2854
RseI	CAYNNNNRTG	1 cut(s)	1428
SapI	GCTCTTC	3 cut(s)	468, 570, 1706
SaqAI	TTAA	6 cut(s)	900, 1095, 1302, 1634, 2211, 2544
SatI	GCNGC	8 cut(s)	12, 294, 581, 800, 1743, 2274, 2283, 2828
Sau96I	GGNCC	8 cut(s)	359, 1348, 1349, 1420, 2040, 2363, 2639, 2640
ScaI	AGTACT	1 cut(s)	2471
SchI	GAGTC	3 cut(s)	2210, 2573, 2762
ScrFI	CCNGG	4 cut(s)	2175, 2315, 2387, 2763
SduI	GDGCHC	3 cut(s)	1016, 1352, 2643
SfcI	CTRYAG	3 cut(s)	167, 1314, 2532
SinI	GGWCC	4 cut(s)	359, 1420, 2040, 2363
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	4 cut(s)	1472, 1600, 2220, 2441
SmoI	CTYRAG	4 cut(s)	1472, 1600, 2220, 2441
SsiI	CCGC	7 cut(s)	17, 111, 911, 1133, 1610, 2123, 2147
SspMI	CTAG	7 cut(s)	387, 777, 785, 1467, 1515, 1856, 2603
StyD4I	CCNGG	4 cut(s)	2173, 2313, 2385, 2761
StyI	CCWWGG	1 cut(s)	2043
TaaI	ACNGT	7 cut(s)	210, 679, 1083, 1489, 2012, 2096, 2555
TaiI	ACGT	3 cut(s)	80, 1945, 2707
TaqI	TCGA	3 cut(s)	1565, 1909, 2592
TatI	WGTACW	5 cut(s)	392, 1024, 2469, 2599, 2853
Tru1I	TTAA	6 cut(s)	900, 1095, 1302, 1634, 2211, 2544
Tru9I	TTAA	6 cut(s)	900, 1095, 1302, 1634, 2211, 2544
TscAI	CASTG	6 cut(s)	406, 540, 1318, 1494, 1588, 2017
TseFI	GTSAC	6 cut(s)	401, 430, 1583, 1767, 2090, 2180
TseI	GCWGC	8 cut(s)	11, 293, 580, 799, 1742, 2273, 2282, 2827
Tsp45I	GTSAC	6 cut(s)	401, 430, 1583, 1767, 2090, 2180
TspGWI	ACGGA	2 cut(s)	2013, 2387
TspRI	CASTG	6 cut(s)	406, 540, 1318, 1494, 1588, 2017
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	4 cut(s)	359, 1420, 2040, 2363
XagI	CCTNNNNNAGG	1 cut(s)	924
XceI	RCATGY	1 cut(s)	2804
XmnI	GAANNNNTTC	4 cut(s)	348, 511, 1905, 2142
XspI	CTAG	7 cut(s)	387, 777, 785, 1467, 1515, 1856, 2603
ZrmI	AGTACT	1 cut(s)	2471
Zsp2I	ATGCAT	2 cut(s)	1504, 2425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.