Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

3695492 .. 3703972

Gene Structure 8481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04760.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGGCTGATGATGCACAACTGGATATTCCTCCAGACTGTGTGAGCAGTCAAACTGCGAAATGCCAAGAAGAAAGTACATCAGGACACGCACATGAAGTTGGTCCTGAAAGTGGATATGGTGAATCAAGCAAGCAAAAGGCATTTGGAGATGTGACTGAGAAGTCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGCAAGCAACAGTAGTCAAGGTGGTGTAAACCTTCTTGCCAATTCAGCACATGGACATCAGTTTGGCTCTGTACACATTCAAAATGGACTATTACAAACCACAACAGCATTATCTGGTTACACTACCAGTGGCCATTTGCAACCATTTTTTGGCAATGTGACCAAGAATTCTCTTGCTGAACCAGTGGAACTGCCTCCTGAAGAGTCTCTTGAAGATCTGGGTTTGAATTGTCAAACTGGTAAAACTGCATGCTCTGAACGGATTTCACTGGAACAGAGAAATGATTTTGGGTTTGGAACTTCATCTTGTGAAACAAGAGAAGAAAAGCAGCATATCGGCTCCGATAGTGTTCAAAATGAACTCTTACAAACCAGTATTCCAGTATCCAGCTGTGGCAGTGAACAATTACAGTTGATTACTGAACGTGTGAACGTGACTTTTCCTAATGAACAAGCTAGAGTGCCTCCTAAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGGAACTTCATCTAGTGTACTAGCAGAAGACAAGCAGCATTGTGGCTCTGATGTTCCACAAAATGAAGCGTTACAAAGCCAATATTGGACTCGTACAATTAGACTGGAGGTACCCAGCTGTGATGGTAACGAACCCTTGCTGTCGTTTTGTGAAAATGTTGACATATGTTCTCTTGATGAAAAAGCGGGACTACCTTGTGAAGGTTTGAAAAAGACTTTGAAACAGATAAATGATGTTAGTTCTGGAACTTCATATAGTCAACCAACAGAAGAGAACCAGAATTTGGGATCTTCTTTTGTACAAGATGAACCACTACAAACTATTATTCCGGTAGTCAGCTCTGGTGGAAATGAACAGTTGCGGGTGGTTAATGAAAATGTGAGTGTGCCTTCTCTTGGTGAACAAGCGGGACTGCTTCCTGAAGCTGTGAGCAAGACTTGTCAGACTGATAAACTTTCACGCTCTCTCCATACTGCATCGGATCAGATCAATGAATCTGGTTCTGGAAGTGTACAGTGTGAACCACAGGAACAGAGAGATCAGCTTGGCTCTTTACCTTCCCAAAATGATCAAGTTAAAAATAGCACTGCAGTATCCAGCTCCATTGGTTTTGAACAGTCGGGTCCTTCTGTTGACGAGATGAATAATTCTGTTATTGGGCACTTGGAACCACCCCCTGAAGATGCAAGCAAGGACCATAACAAAGAACTAATCAAACCACACACGAATGATGCAACACAAAATTCTTGTCTTGAGCCATCAGAAACAGCGTCTAAGAATGCATCCAAAAATTCTACCCAGTTTGGTTGCAAGGATAAGCGAAATTCGAGTTCAAGACGAAAGTCAAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACAAGCGAGAAACCTGAGGCTCCTGAATTAAGTAATAATGTTGCAACTCTTGATACAAGTAATAGTGTTGCTAATGTCAGCAATGAGAAAGAGGGGAAAAGGAAGAAGAGAAAGAAGAAACACAGGGAAAGAGTTGCAGCAGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTAGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAACTAAAGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGCAAATCAAAAATAAGAGATCTTTTTCAACGTCTTGATTCTCTATGTGCTGAAGGAATGTTTCCTGAATCTTTATTTGATGAAGAAGGACAGATTGACAGTGAGGATATATTCTGCGCAAAATGTGGGTCCTTGGACGTATATGCTGATAATGACATCATACTTTGTGATGGGGCTTGCGACCGTGGATTCCACCAGCATTGTCTGGAACCGCCTCTTTTGAGTGAAGAAATTCCACCTGATGATGAGGGTTGGTTATGCCCTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATCTTTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCAGCTGTTGCAGCATCAGCAGGACAGCATCAGGAGAACAACCAGGGACTTCCTTCAGAAGATTCTGATGATGATGATTATGACCCTGATGGTCCAGAAACGGATGAGGAAGTCCAGGAAGGAGAATCAAGTTCTGATGAATCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTAATGATGAGCAGTACTTGGGGATTCCTTCTGATGATTCAGAGGACGACGATTTCAATCCTGATGCTCCAGATCCCACAGAGGATGTTAAGCAAGGCAGTTCAAGCTCTGATTTTACATCCGACTCCGAGGATCTTGCAGCTGTACTAGATGAGGATAGAAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTGTGTTGGAAGCAAGTACACTTCTTAGAGGCTCTGGTGGAAAAGGTTCTAAACGTGGCCAGAAGAGACATTTTATAAAAGATGAGCTATCATCTTTAATAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCACGTAGAGAGGCTGGACTACAAAAAGCTGCATGATGAGGAATATGGAGATATTCCTACTAGCGATGATGAAGAATATATTGAAACTGCTGTACCAAGGAAAAGGAAGAAAGGCGCTGGACAAGTCTCTCCAGGATCACTAAAAGGAAAGCCCTCGACCATTAAGAAAGGAAAAACCACCAAAGATATAAAAGATGATCCTGACAAGAATGAGCATACTCCTAGAAGAACACCTCGACGAAAGTCAAGTGCTAATGATAACAGTAGCTCACCAAATGAATCGCTTAAAAGCTCTCCTAAGTCTGGTTCTACTAGTGGGCGGGCTAAAGGATCAACATATAGAAGACTCGGGGAAGCTGTAACTCAGCGACTCTATACATCCTTCAAGGAGAATCAATACCCAGACCGAAGTATGAAGGAAAGACTGGCCCAAGAACTAGGAGTCATGGCTAAGCAGGTAAGCAAATGGTTTGAAAATGCTCGCCATTGTGTGAAAGCAGGTCTGGCCTTGCCTCAAGCTATGAGAACACAACCTAACCAAGCAGAAACTAGTATCAAAGATGCTCATCACGATGGAGCTCAAAAGAATGAATCACCAGGGACAGCTGATGCTGTGGCAGGTAGCTGCAGTCAGGATGTGAAGGATAATAAATTGGCGACTCCAAAAAGCAGTAGAGCTAAGACTAGTGCCCCCAAGGGTAGAAAGAGAAAATCTAAGTCAGATCCTGGGGGATCGGATCTTGATGAAAAATTTAAGACACCACCAGAAACTAGTAGTAGAGGTGATCGAGTTACTAGACGACGAAAATCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1203

Amino Acids

130.97

Weight (kDa)

4.97

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	698 - 736	3.4e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2717
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc16I	TGCGCA	1 cut(s)	2020
Acc36I	ACCTGC	3 cut(s)	3235, 3278, 3398
Acc65I	GGTACC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	820
AccB7I	CCANNNNNTGG	2 cut(s)	347, 994
AciI	CCGC	5 cut(s)	896, 1072, 1118, 2114, 3109
AcoI	YGGCCR	3 cut(s)	328, 2698, 2755
AcsI	RAATTY	8 cut(s)	364, 991, 1453, 1501, 1534, 1742, 2133, 3539
AcuI	CTGAAG	7 cut(s)	213, 417, 1152, 1410, 1974, 2280, 2301
AfiI	CCNNNNNNNGG	7 cut(s)	110, 347, 911, 994, 1106, 2780, 3092
AflIII	ACRYGT	1 cut(s)	622
AhlI	ACTAGT	4 cut(s)	3101, 3338, 3473, 3560
AjnI	CCWGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
Alw21I	GWGCWC	1 cut(s)	3370
Alw26I	GTCTC	5 cut(s)	168, 408, 2429, 2701, 2920
AlwNI	CAGNNNCTG	3 cut(s)	2423, 2753, 3515
Ama87I	CYCGRG	1 cut(s)	3137
AoxI	GGCC	6 cut(s)	328, 2630, 2698, 2755, 3216, 3294
ApaI	GGGCCC	1 cut(s)	2634
ApeKI	GCWGC	8 cut(s)	526, 745, 1733, 2264, 2273, 2585, 2818, 3414
ApoI	RAATTY	8 cut(s)	364, 991, 1453, 1501, 1534, 1742, 2133, 3539
ArsI	GACNNNNNNTTYG	4 cut(s)	1444, 1476, 2015, 2047
Asp700I	GAANNNNTTC	3 cut(s)	1896, 2133, 2686
Asp718I	GGTACC	1 cut(s)	820
AspLEI	GCGC	3 cut(s)	1590, 2021, 2906
AspS9I	GGNCC	8 cut(s)	101, 1334, 1405, 2031, 2354, 2630, 2631, 3217
AsuHPI	GGTGA	7 cut(s)	131, 158, 1121, 2636, 3051, 3375, 3584
AvaI	CYCGRG	1 cut(s)	3137
AvaII	GGWCC	5 cut(s)	101, 1334, 1405, 2031, 2354
AxyI	CCTNAGG	1 cut(s)	1611
BaeGI	GKGCMC	3 cut(s)	1374, 2634, 3481
BaeI	ACNNNNGTAYC	4 cut(s)	1287, 1320, 2865, 2898
BalI	TGGCCA	3 cut(s)	330, 2700, 2757
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	2 cut(s)	2634, 3370
BbsI	GAAGAC	2 cut(s)	744, 3139
Bbv12I	GWGCWC	1 cut(s)	3370
BbvI	GCAGC	8 cut(s)	538, 757, 1745, 2276, 2285, 2597, 2805, 3401
BccI	CCATC	7 cut(s)	827, 1477, 2066, 2345, 2420, 2756, 3356
BcgI	CGANNNNNNTGC	2 cut(s)	2564, 2598
BciT130I	CCWGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
BciVI	GTATCC	2 cut(s)	592, 1315
BclI	TGATCA	1 cut(s)	1279
BcoDI	GTCTC	5 cut(s)	168, 408, 2429, 2701, 2920
BcuI	ACTAGT	4 cut(s)	3101, 3338, 3473, 3560
BfmI	CTRYAG	2 cut(s)	1299, 3415
BfoI	RGCGCY	1 cut(s)	2907
BfuAI	ACCTGC	3 cut(s)	3235, 3278, 3398
BfuI	GTATCC	2 cut(s)	592, 1315
BglII	AGATCT	4 cut(s)	412, 1559, 1921, 2221
BisI	GCNGC	8 cut(s)	527, 746, 1734, 2265, 2274, 2586, 2819, 3415
BlpI	GCTNAGC	1 cut(s)	3240
BlsI	GCNGC	8 cut(s)	528, 747, 1735, 2266, 2275, 2587, 2820, 3416
BmcAI	AGTACT	1 cut(s)	2462
Bme1390I	CCNGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
Bme18I	GGWCC	5 cut(s)	101, 1334, 1405, 2031, 2354
BmeT110I	CYCGRG	1 cut(s)	3137
BmgT120I	GGNCC	8 cut(s)	101, 1334, 1405, 2031, 2354, 2630, 2631, 3217
BmrFI	CCNGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
BmrI	ACTGGG	2 cut(s)	1504, 2629
BmuI	ACTGGG	2 cut(s)	1504, 2629
BoxI	GACNNNNGTC	2 cut(s)	1552, 3031
BpiI	GAAGAC	2 cut(s)	744, 3139
BpmI	CTGGAG	4 cut(s)	15, 836, 2499, 2904
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	3240
BpuEI	CTTGAG	5 cut(s)	1484, 1576, 2196, 2453, 3288
BsaAI	YACGTR	1 cut(s)	2794
BsaBI	GATNNNNATC	2 cut(s)	2502, 3354
BsaI	GGTCTC	1 cut(s)	2429
BsaJI	CCNNGG	9 cut(s)	2034, 2086, 2164, 2305, 2574, 2885, 3386, 3483, 3515
BsaWI	WCCGGW	2 cut(s)	1039, 1782
BsaXI	ACNNNNNCTCC	2 cut(s)	1161, 1191
Bsc4I	CCNNNNNNNGG	7 cut(s)	110, 347, 911, 994, 1106, 2780, 3092
Bse21I	CCTNAGG	1 cut(s)	1611
Bse3DI	GCAATG	2 cut(s)	358, 1684
Bse8I	GATNNNNATC	2 cut(s)	2502, 3354
BseBI	CCWGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
BseDI	CCNNGG	9 cut(s)	2034, 2086, 2164, 2305, 2574, 2885, 3386, 3483, 3515
BseGI	GGATG	7 cut(s)	1493, 2174, 2371, 2536, 2564, 3167, 3430
BseJI	GATNNNNATC	2 cut(s)	2502, 3354
BseLI	CCNNNNNNNGG	7 cut(s)	110, 347, 911, 994, 1106, 2780, 3092
BseMI	GCAATG	2 cut(s)	358, 1684
BseMII	CTCAG	5 cut(s)	147, 162, 1602, 1757, 3167
BseSI	GKGCMC	3 cut(s)	1374, 2634, 3481
BseXI	GCAGC	8 cut(s)	538, 757, 1745, 2276, 2285, 2597, 2805, 3401
BseYI	CCCAGC	2 cut(s)	824, 2241
Bsh1285I	CGRYCG	1 cut(s)	2086
BshFI	GGCC	6 cut(s)	330, 2632, 2700, 2757, 3218, 3296
BshNI	GGYRCC	1 cut(s)	820
BsiEI	CGRYCG	1 cut(s)	2086
BsiHKAI	GWGCWC	1 cut(s)	3370
BsiHKCI	CYCGRG	1 cut(s)	3137
BsiSI	CCGG	2 cut(s)	1040, 1783
BslFI	GGGAC	5 cut(s)	195, 912, 1134, 2322, 3403
BslI	CCNNNNNNNGG	7 cut(s)	110, 347, 911, 994, 1106, 2780, 3092
BsmAI	GTCTC	5 cut(s)	168, 408, 2429, 2701, 2920
BsmFI	GGGAC	5 cut(s)	195, 912, 1134, 2322, 3403
BsmI	GAATGC	1 cut(s)	1495
BsnI	GGCC	6 cut(s)	330, 2632, 2700, 2757, 3218, 3296
Bso31I	GGTCTC	1 cut(s)	2429
BsoBI	CYCGRG	1 cut(s)	3137
Bsp120I	GGGCCC	1 cut(s)	2630
Bsp1286I	GDGCHC	4 cut(s)	1374, 2634, 3370, 3481
Bsp1407I	TGTACA	3 cut(s)	268, 1009, 1222
Bsp1720I	GCTNAGC	1 cut(s)	3240
BspACI	CCGC	5 cut(s)	896, 1072, 1118, 2114, 3109
BspANI	GGCC	6 cut(s)	330, 2632, 2700, 2757, 3218, 3296
BspCNI	CTCAG	5 cut(s)	148, 163, 1603, 1758, 3166
BspMAI	CTGCAG	2 cut(s)	1303, 3419
BspMI	ACCTGC	3 cut(s)	3235, 3278, 3398
BspT107I	GGYRCC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	2429
BsrDI	GCAATG	2 cut(s)	358, 1684
BsrGI	TGTACA	3 cut(s)	268, 1009, 1222
BssECI	CCNNGG	9 cut(s)	2034, 2086, 2164, 2305, 2574, 2885, 3386, 3483, 3515
BssT1I	CCWWGG	3 cut(s)	2034, 2885, 3483
Bst2UI	CCWGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
Bst4CI	ACNGT	9 cut(s)	38, 209, 609, 1068, 1227, 1329, 2003, 2087, 3053
Bst6I	CTCTTC	4 cut(s)	393, 975, 1697, 2699
BstAPI	GCANNNNNTGC	1 cut(s)	2270
BstAUI	TGTACA	3 cut(s)	268, 1009, 1222
BstBAI	YACGTR	1 cut(s)	2794
BstC8I	GCNNGC	7 cut(s)	131, 202, 448, 1399, 2080, 3111, 3271
BstDSI	CCRYGG	1 cut(s)	2086
BstENI	CCTNNNNNAGG	1 cut(s)	909
BstF5I	GGATG	7 cut(s)	1493, 2174, 2371, 2536, 2564, 3167, 3430
BstH2I	RGCGCY	1 cut(s)	2907
BstHHI	GCGC	3 cut(s)	1590, 2021, 2906
BstMAI	GTCTC	5 cut(s)	168, 408, 2429, 2701, 2920
BstMCI	CGRYCG	1 cut(s)	2086
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 242, 2270, 2273, 2279, 2550, 3293
BstNI	CCWGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
BstNSI	RCATGY	1 cut(s)	450
BstPAI	GACNNNNGTC	2 cut(s)	1552, 3031
BstSCI	CCNGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
BstSFI	CTRYAG	2 cut(s)	1299, 3415
BstSLI	GKGCMC	3 cut(s)	1374, 2634, 3481
BstV1I	GCAGC	8 cut(s)	538, 757, 1745, 2276, 2285, 2597, 2805, 3401
BstV2I	GAAGAC	2 cut(s)	744, 3139
Bsu36I	CCTNAGG	1 cut(s)	1611
BsuI	GTATCC	2 cut(s)	592, 1315
BsuRI	GGCC	6 cut(s)	330, 2632, 2700, 2757, 3218, 3296
BtgI	CCRYGG	1 cut(s)	2086
BtgZI	GCGATG	1 cut(s)	2868
BtsCI	GGATG	7 cut(s)	1493, 2174, 2371, 2536, 2564, 3167, 3430
BtsI	GCAGTG	3 cut(s)	601, 1296, 1579
BtsIMutI	CAGTG	8 cut(s)	331, 387, 464, 601, 1232, 1296, 1579, 2008
BveI	ACCTGC	3 cut(s)	3235, 3278, 3398
Cac8I	GCNNGC	7 cut(s)	131, 202, 448, 1399, 2080, 3111, 3271
CaiI	CAGNNNCTG	3 cut(s)	2423, 2753, 3515
CfoI	GCGC	3 cut(s)	1590, 2021, 2906
Cfr13I	GGNCC	8 cut(s)	101, 1334, 1405, 2031, 2354, 2630, 2631, 3217
CseI	GACGC	2 cut(s)	1470, 1911
CspCI	CAANNNNNGTGG	2 cut(s)	2084, 2119
CviAII	CATG	5 cut(s)	92, 248, 447, 2822, 3235
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	3 cut(s)	328, 2698, 2755
Eam1104I	CTCTTC	4 cut(s)	393, 975, 1697, 2699
EarI	CTCTTC	4 cut(s)	393, 975, 1697, 2699
Ecl136II	GAGCTC	1 cut(s)	3368
Eco130I	CCWWGG	3 cut(s)	2034, 2885, 3483
Eco24I	GRGCYC	2 cut(s)	2634, 3370
Eco31I	GGTCTC	1 cut(s)	2429
Eco47I	GGWCC	5 cut(s)	101, 1334, 1405, 2031, 2354
Eco53kI	GAGCTC	1 cut(s)	3368
Eco57I	CTGAAG	7 cut(s)	213, 417, 1152, 1410, 1974, 2280, 2301
Eco81I	CCTNAGG	1 cut(s)	1611
Eco88I	CYCGRG	1 cut(s)	3137
EcoICRI	GAGCTC	1 cut(s)	3368
EcoNI	CCTNNNNNAGG	1 cut(s)	909
EcoO109I	RGGNCCY	4 cut(s)	1334, 2031, 2630, 2631
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
EcoT14I	CCWWGG	3 cut(s)	2034, 2885, 3483
EcoT22I	ATGCAT	2 cut(s)	1495, 2416
EcoT38I	GRGCYC	2 cut(s)	2634, 3370
ErhI	CCWWGG	3 cut(s)	2034, 2885, 3483
FaeI	CATG	5 cut(s)	95, 251, 450, 2825, 3238
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	5 cut(s)	195, 912, 1134, 2322, 3403
FatI	CATG	5 cut(s)	91, 247, 446, 2821, 3234
FauI	CCCGC	4 cut(s)	889, 1065, 1111, 3102
FauNDI	CATATG	1 cut(s)	875
FbaI	TGATCA	1 cut(s)	1279
Fnu4HI	GCNGC	8 cut(s)	527, 746, 1734, 2265, 2274, 2586, 2819, 3415
FokI	GGATG	7 cut(s)	1480, 2181, 2378, 2543, 2551, 3154, 3437
FriOI	GRGCYC	2 cut(s)	2634, 3370
Fsp4HI	GCNGC	8 cut(s)	527, 746, 1734, 2265, 2274, 2586, 2819, 3415
FspI	TGCGCA	1 cut(s)	2020
GlaI	GCGC	3 cut(s)	1589, 2020, 2905
GluI	GCNGC	8 cut(s)	527, 746, 1734, 2265, 2274, 2586, 2819, 3415
GsaI	CCCAGC	2 cut(s)	828, 2245
GsuI	CTGGAG	4 cut(s)	15, 836, 2499, 2904
HaeII	RGCGCY	1 cut(s)	2907
HaeIII	GGCC	6 cut(s)	330, 2632, 2700, 2757, 3218, 3296
HapII	CCGG	2 cut(s)	1040, 1783
HgaI	GACGC	2 cut(s)	1470, 1911
HhaI	GCGC	3 cut(s)	1590, 2021, 2906
Hin1II	CATG	5 cut(s)	95, 251, 450, 2825, 3238
Hin6I	GCGC	3 cut(s)	1588, 2019, 2904
HinP1I	GCGC	3 cut(s)	1588, 2019, 2904
HincII	GTYRAC	3 cut(s)	871, 971, 1345
HindII	GTYRAC	3 cut(s)	871, 971, 1345
HpaII	CCGG	2 cut(s)	1040, 1783
HphI	GGTGA	7 cut(s)	131, 158, 1121, 2636, 3051, 3375, 3584
Hpy99I	CGWCG	4 cut(s)	1905, 2498, 3030, 3594
HpyCH4III	ACNGT	9 cut(s)	38, 209, 609, 1068, 1227, 1329, 2003, 2087, 3053
HpyCH4IV	ACGT	6 cut(s)	622, 630, 1933, 2040, 2695, 2793
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 242, 2270, 2273, 2279, 2550, 3293
HpySE526I	ACGT	6 cut(s)	622, 630, 1933, 2040, 2695, 2793
Hsp92II	CATG	5 cut(s)	95, 251, 450, 2825, 3238
HspAI	GCGC	3 cut(s)	1588, 2019, 2904
KpnI	GGTACC	1 cut(s)	824
Ksp22I	TGATCA	1 cut(s)	1279
LmnI	GCTCC	6 cut(s)	542, 1316, 1621, 1870, 2518, 3365
Lsp1109I	GCAGC	8 cut(s)	538, 757, 1745, 2276, 2285, 2597, 2805, 3401
MaeII	ACGT	6 cut(s)	622, 630, 1933, 2040, 2695, 2793
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	4 cut(s)	1374, 2634, 3370, 3481
MlsI	TGGCCA	3 cut(s)	330, 2700, 2757
MluNI	TGGCCA	3 cut(s)	330, 2700, 2757
MlyI	GAGTC	9 cut(s)	410, 793, 2201, 2564, 2753, 3129, 3153, 3240, 3442
MmeI	TCCRAC	3 cut(s)	1811, 2592, 2628
Mox20I	TGGCCA	3 cut(s)	330, 2700, 2757
Mph1103I	ATGCAT	2 cut(s)	1495, 2416
MroXI	GAANNNNTTC	3 cut(s)	1896, 2133, 2686
MscI	TGGCCA	3 cut(s)	330, 2700, 2757
MseI	TTAA	9 cut(s)	1080, 1287, 1625, 2202, 2535, 2738, 2952, 3075, 3543
MslI	CAYNNNNRTG	3 cut(s)	90, 1437, 3360
Msp20I	TGGCCA	3 cut(s)	330, 2700, 2757
MspA1I	CMGCKG	6 cut(s)	588, 828, 2241, 2267, 2588, 3395
MspI	CCGG	2 cut(s)	1040, 1783
MspR9I	CCNGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
MunI	CAATTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	1495
MvaI	CCWGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
MwoI	GCNNNNNNNGC	7 cut(s)	11, 242, 2270, 2273, 2279, 2550, 3293
NdeI	CATATG	1 cut(s)	875
NlaIII	CATG	5 cut(s)	95, 251, 450, 2825, 3238
NmuCI	GTSAC	6 cut(s)	151, 355, 631, 1574, 1758, 2171
NsbI	TGCGCA	1 cut(s)	2020
NsiI	ATGCAT	2 cut(s)	1495, 2416
NspI	RCATGY	1 cut(s)	450
PaeI	GCATGC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	1495
PdmI	GAANNNNTTC	3 cut(s)	1896, 2133, 2686
PflMI	CCANNNNNTGG	2 cut(s)	347, 994
PfoI	TCCNGGA	2 cut(s)	2376, 2920
PkrI	GCNGC	8 cut(s)	528, 747, 1735, 2266, 2275, 2587, 2820, 3416
PleI	GAGTC	9 cut(s)	409, 793, 2201, 2564, 2752, 3129, 3153, 3239, 3442
PpsI	GAGTC	9 cut(s)	409, 793, 2201, 2564, 2752, 3129, 3153, 3239, 3442
Ppu21I	YACGTR	1 cut(s)	2794
PpuMI	RGGWCCY	2 cut(s)	1334, 2031
PshAI	GACNNNNGTC	2 cut(s)	1552, 3031
PsiI	TTATAA	1 cut(s)	2717
Psp124BI	GAGCTC	1 cut(s)	3370
Psp5II	RGGWCCY	2 cut(s)	1334, 2031
Psp6I	CCWGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
PspFI	CCCAGC	2 cut(s)	824, 2241
PspGI	CCWGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
PspOMI	GGGCCC	1 cut(s)	2630
PspPI	GGNCC	8 cut(s)	101, 1334, 1405, 2031, 2354, 2630, 2631, 3217
PspPPI	RGGWCCY	2 cut(s)	1334, 2031
PstI	CTGCAG	2 cut(s)	1303, 3419
PstNI	CAGNNNCTG	3 cut(s)	2423, 2753, 3515
PvuII	CAGCTG	6 cut(s)	588, 828, 2241, 2267, 2588, 3395
RseI	CAYNNNNRTG	3 cut(s)	90, 1437, 3360
SacI	GAGCTC	1 cut(s)	3370
SaqAI	TTAA	9 cut(s)	1080, 1287, 1625, 2202, 2535, 2738, 2952, 3075, 3543
SatI	GCNGC	8 cut(s)	527, 746, 1734, 2265, 2274, 2586, 2819, 3415
Sau96I	GGNCC	8 cut(s)	101, 1334, 1405, 2031, 2354, 2630, 2631, 3217
ScaI	AGTACT	1 cut(s)	2462
SchI	GAGTC	9 cut(s)	410, 793, 2201, 2564, 2753, 3129, 3153, 3240, 3442
ScrFI	CCNGG	7 cut(s)	2166, 2306, 2378, 2754, 2922, 3387, 3516
SduI	GDGCHC	4 cut(s)	1374, 2634, 3370, 3481
SfcI	CTRYAG	2 cut(s)	1299, 3415
SinI	GGWCC	5 cut(s)	101, 1334, 1405, 2031, 2354
SmiMI	CAYNNNNRTG	3 cut(s)	90, 1437, 3360
SmlI	CTYRAG	5 cut(s)	1463, 1591, 2211, 2432, 3303
SmoI	CTYRAG	5 cut(s)	1463, 1591, 2211, 2432, 3303
SpeI	ACTAGT	4 cut(s)	3101, 3338, 3473, 3560
SphI	GCATGC	1 cut(s)	450
SsiI	CCGC	5 cut(s)	896, 1072, 1118, 2114, 3109
SspI	AATATT	1 cut(s)	794
SstI	GAGCTC	1 cut(s)	3370
StyD4I	CCNGG	7 cut(s)	2164, 2304, 2376, 2752, 2920, 3385, 3514
StyI	CCWWGG	3 cut(s)	2034, 2885, 3483
TaaI	ACNGT	9 cut(s)	38, 209, 609, 1068, 1227, 1329, 2003, 2087, 3053
TaiI	ACGT	6 cut(s)	625, 633, 1936, 2043, 2698, 2796
TaqI	TCGA	5 cut(s)	1538, 1900, 2945, 3025, 3577
TaqII	GACCGA	1 cut(s)	3210
TatI	WGTACW	8 cut(s)	74, 268, 727, 1009, 1222, 2460, 2590, 2657
Tru1I	TTAA	9 cut(s)	1080, 1287, 1625, 2202, 2535, 2738, 2952, 3075, 3543
Tru9I	TTAA	9 cut(s)	1080, 1287, 1625, 2202, 2535, 2738, 2952, 3075, 3543
TscAI	CASTG	8 cut(s)	331, 387, 471, 601, 1232, 1303, 1579, 2008
TseFI	GTSAC	6 cut(s)	151, 355, 631, 1574, 1758, 2171
TseI	GCWGC	8 cut(s)	526, 745, 1733, 2264, 2273, 2585, 2818, 3414
Tsp45I	GTSAC	6 cut(s)	151, 355, 631, 1574, 1758, 2171
TspGWI	ACGGA	2 cut(s)	472, 2378
TspRI	CASTG	8 cut(s)	331, 387, 471, 601, 1232, 1303, 1579, 2008
Van91I	CCANNNNNTGG	2 cut(s)	347, 994
VpaK11BI	GGWCC	5 cut(s)	101, 1334, 1405, 2031, 2354
XagI	CCTNNNNNAGG	1 cut(s)	909
XapI	RAATTY	8 cut(s)	364, 991, 1453, 1501, 1534, 1742, 2133, 3539
XceI	RCATGY	1 cut(s)	450
XmnI	GAANNNNTTC	3 cut(s)	1896, 2133, 2686
ZrmI	AGTACT	1 cut(s)	2462
Zsp2I	ATGCAT	2 cut(s)	1495, 2416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.