Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003054

Physical Location & Seq

Genomic Coordinates Reverse (-)

7591394 .. 7592373

Gene Structure 980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGAAAACATTCAAAGCCATAAGAGACCGGACATATTCAGGCGTAGGAGACCTCATCAAGCTCCTCCCGACCGGAACCGTCTTCTTGTTCCAATTTTTAAACCCTGTCCTAACCAACAATGGACATTGCCTCCTCATCAACAAATACTTAACCGGAGTTCTCATCGTTATTTGTGCCTTCTCTTGTTGCTTCACTTGCTTCACCGATAGTTACCGAACAAGAGACGGTTACGTTCATTATGGAGTTGCCACCGTGAAGGGTCTTTGGCCAGATTCATCTTCAGTGGATTTGTCTTCGAAAAGGCTTAGAGTTGGAGATTTCGTTCACGCTTTCTTCTCTCTTATCGTGTTCAGTGTTATTTCCTTGTTGGATGCAAACACCGTGAATTGTTTCTATCCTGGCTTTGGCTCCGCTGGGAAGATCTTTCTCATGGTTTTGCCTCCGGTGATCGGAGTTATCTCCGGTGCTGTTTTCACGGTGTTCCCTAGTAGACGTCACGGAATTGGGAATCCCTCGGACCACAGTGAGGATGATGCTTCCGAGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0008150 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

184

Amino Acids

20.17

Weight (kDa)

8.55

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	15 - 170	3.2e-61	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21550
fragaria_vesca	FvH4_4g16720
malus_domestica	MD13G1177000.v1.1 MD13G1177200.v1.1 MD15G1004000.v1.1 MD16G1178800.v1.1
prunus_persica	Prupe.1G146100_v2.0.a1 Prupe.1G146200_v2.0.a1 Prupe.1G146300_v2.0.a1 Prupe.1G146400_v2.0.a1
pyrus_communis	pycom16g15020
rosa_chinensis	RchiOBHm_Chr4g0420171 RchiOBHm_Chr4g0420251 RchiOBHm_Chr4g0420271
rosa_laevigata	RLG00000007779 RLG00000007781 RLG00000007784
rosa_multiflora	Rmu_sc0001767.1_g000016 Rmu_sc0004455.1_g000002 Rmu_sc0004455.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362770 Rroxscaffold_5G00362870 Rroxscaffold_5G00362890
rosa_rugosa	Rorug04G0161900 Rorug04G0162700 Rorug04G0162900
rosa_samantha	Rh4AG223600 Rh4BG226200 Rh4BG226600 Rh4BG226800 Rh4CG237000 Rh4CG237200 Rh4CG237500 Rh4DG222400 Rh4DG222500
rosa_wichuraiana	Rw4G019250 Rw4G019260 Rw4G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	496
AfiI	CCNNNNNNNGG	3 cut(s)	407, 452, 529
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	3 cut(s)	21, 45, 219
AoxI	GGCC	1 cut(s)	269
Asp700I	GAANNNNTTC	2 cut(s)	11, 392
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	196, 460
AsuII	TTCGAA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	76, 288
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	3 cut(s)	21, 45, 219
BfaI	CTAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	79, 412
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	364, 526
BpiI	GAAGAC	2 cut(s)	76, 288
Bpu14I	TTCGAA	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	496
BsaI	GGTCTC	2 cut(s)	21, 45
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	5 cut(s)	30, 74, 155, 445, 464
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 309, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 452, 529
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	379, 538
BseLI	CCNNNNNNNGG	3 cut(s)	407, 452, 529
BseMI	GCAATG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	56, 125
BseYI	CCCAGC	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	5 cut(s)	31, 75, 156, 446, 465
BslI	CCNNNNNNNGG	3 cut(s)	407, 452, 529
BsmAI	GTCTC	3 cut(s)	21, 45, 219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	2 cut(s)	21, 45
Bsp119I	TTCGAA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	423, 450
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	79, 412
BspT104I	TTCGAA	1 cut(s)	299
BspTNI	GGTCTC	2 cut(s)	21, 45
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	423, 450
BssNI	GRCGYC	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	6 cut(s)	82, 230, 256, 385, 481, 527
BstACI	GRCGYC	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	379, 538
BstKTI	GATC	2 cut(s)	426, 453
BstMAI	GTCTC	3 cut(s)	21, 45, 219
BstMBI	GATC	2 cut(s)	423, 450
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstV2I	GAAGAC	2 cut(s)	76, 288
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	379, 538
BtsIMutI	CAGTG	3 cut(s)	291, 361, 532
Cfr13I	GGNCC	1 cut(s)	520
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	6 cut(s)	20, 64, 271, 307, 405, 411
CviKI_1	RGCY	6 cut(s)	20, 64, 271, 307, 405, 411
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	425, 452
DpnII	GATC	2 cut(s)	423, 450
DraI	TTTAAA	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	269
Eco31I	GGTCTC	2 cut(s)	21, 45
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	436
FaiI	YATR	4 cut(s)	23, 37, 243, 434
FatI	CATG	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	493
FokI	GGATG	2 cut(s)	386, 545
FspBI	CTAG	1 cut(s)	489
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	5 cut(s)	31, 75, 156, 446, 465
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	1 cut(s)	436
HinfI	GANTC	2 cut(s)	275, 511
HpaII	CCGG	5 cut(s)	31, 75, 156, 446, 465
HphI	GGTGA	2 cut(s)	196, 460
Hpy166II	GTNNAC	2 cut(s)	328, 494
Hpy188I	TCNGA	3 cut(s)	455, 520, 544
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	328, 494
HpyAV	CCTTC	2 cut(s)	190, 253
HpyCH4III	ACNGT	6 cut(s)	82, 230, 256, 385, 481, 527
HpyCH4IV	ACGT	2 cut(s)	234, 496
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	2 cut(s)	234, 496
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	423, 450
LmnI	GCTCC	2 cut(s)	69, 416
LweI	GCATC	2 cut(s)	364, 526
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	234, 496
MaeIII	GTNAC	3 cut(s)	212, 230, 497
MalI	GATC	2 cut(s)	425, 452
MboI	GATC	2 cut(s)	423, 450
MboII	GAAGA	5 cut(s)	76, 273, 288, 328, 433
MflI	RGATCY	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	3 cut(s)	95, 388, 504
MluNI	TGGCCA	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	295, 351
MnlI	CCTC	7 cut(s)	65, 77, 143, 146, 453, 523, 526
Mox20I	TGGCCA	1 cut(s)	271
MroXI	GAANNNNTTC	2 cut(s)	11, 392
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	2 cut(s)	101, 152
Msp20I	TGGCCA	1 cut(s)	271
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	5 cut(s)	31, 75, 156, 446, 465
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	423, 450
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	2 cut(s)	79, 412
NmuCI	GTSAC	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	11, 392
PfeI	GAWTC	2 cut(s)	275, 511
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	79, 412
PspPI	GGNCC	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	101, 152
Sau3AI	GATC	2 cut(s)	423, 450
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	402
SetI	ASST	4 cut(s)	57, 66, 237, 499
SfaNI	GCATC	2 cut(s)	364, 526
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	520
Sse9I	AATT	3 cut(s)	95, 388, 504
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	6 cut(s)	82, 230, 256, 385, 481, 527
TaiI	ACGT	2 cut(s)	237, 499
TaqI	TCGA	2 cut(s)	5, 299
TasI	AATT	3 cut(s)	95, 388, 504
TfiI	GAWTC	2 cut(s)	275, 511
Tru1I	TTAA	2 cut(s)	101, 152
Tru9I	TTAA	2 cut(s)	101, 152
TscAI	CASTG	3 cut(s)	291, 361, 532
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	227, 267
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	291, 361, 532
VpaK11BI	GGWCC	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	2 cut(s)	11, 392
XspI	CTAG	1 cut(s)	489
ZraI	GACGTC	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.