Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004455.1

Orthogroup ID

OG0003054

Physical Location & Seq

Genomic Coordinates Reverse (-)

36544 .. 37146

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004455.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgggggcttcatccagcgcttcatccaaatccaagaaatccaccaaaagcaagggtgtcaaagacattgcattaacaggtgtaggcaacctcatcaagctcctccctaccggcacggtattcttgttccagttcctcaaccccgttttaaccaacaatggccaatgcaacctccccgtcaacaagattataagcgccattctcattgtcgtttccgccttctcttgctgctttgcttccttcaccgacagttacaccggcagtgatggacaaactcactatggaattgcaacaacaaagggcctttggccctcaaccagttctggctctgtggatttgtctgcttacaagcttcgggttggggactttgtgcataccttcttttccttgatcgtgtttgcagtggtatcactattggattccaacactgtgagttgcttctatcctgcgtttgagtccagtgggaggatcttgctcatggtgttgcctcctgtaattggcactatttctggtactgtctttgttgtgttccctaataaacgccacggaattgggtacccttcttcaagttcagattcttcaaaagactctgacgactcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

200

Amino Acids

21.06

Weight (kDa)

8.9

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21550
fragaria_vesca	FvH4_4g16720
malus_domestica	MD13G1177000.v1.1 MD13G1177200.v1.1 MD15G1004000.v1.1 MD16G1178800.v1.1
prunus_persica	Prupe.1G146100_v2.0.a1 Prupe.1G146200_v2.0.a1 Prupe.1G146300_v2.0.a1 Prupe.1G146400_v2.0.a1
pyrus_communis	pycom16g15020
rosa_chinensis	RchiOBHm_Chr4g0420171 RchiOBHm_Chr4g0420251 RchiOBHm_Chr4g0420271
rosa_laevigata	RLG00000007779 RLG00000007781 RLG00000007784
rosa_multiflora	Rmu_sc0001767.1_g000016 Rmu_sc0004455.1_g000002 Rmu_sc0004455.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362770 Rroxscaffold_5G00362870 Rroxscaffold_5G00362890
rosa_rugosa	Rorug04G0161900 Rorug04G0162700 Rorug04G0162900
rosa_samantha	Rh4AG223600 Rh4BG226200 Rh4BG226600 Rh4BG226800 Rh4CG237000 Rh4CG237200 Rh4CG237500 Rh4DG222400 Rh4DG222500
rosa_wichuraiana	Rw4G019250 Rw4G019260 Rw4G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	2 cut(s)	514, 557
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	465, 497
AgsI	TTSAA	2 cut(s)	567, 582
AluBI	AGCT	2 cut(s)	100, 352
AluI	AGCT	2 cut(s)	100, 352
AlwI	GGATC	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	3 cut(s)	160, 301, 308
ApeKI	GCWGC	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	20, 197
AspS9I	GGNCC	2 cut(s)	301, 309
AsuHPI	GGTGA	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	601
BfoI	RGCGCY	2 cut(s)	21, 198
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	301, 309
BmiI	GGNNCC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 497
Bse118I	RCCGGY	2 cut(s)	110, 257
Bse1I	ACTGG	3 cut(s)	130, 318, 459
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	11, 23
BseLI	CCNNNNNNNGG	2 cut(s)	465, 497
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	3 cut(s)	130, 318, 459
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	3 cut(s)	162, 303, 310
BshNI	GGYRCC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	111, 258
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	465, 497
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	162, 303, 310
Bsp143I	GATC	2 cut(s)	390, 468
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	3 cut(s)	162, 303, 310
BspLI	GGNNCC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	110, 257
BsrI	ACTGG	3 cut(s)	130, 318, 459
BssAI	RCCGGY	2 cut(s)	110, 257
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	2 cut(s)	390, 468
Bst4CI	ACNGT	4 cut(s)	118, 251, 430, 517
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	11, 23
BstH2I	RGCGCY	2 cut(s)	21, 198
BstHHI	GCGC	2 cut(s)	20, 197
BstKTI	GATC	2 cut(s)	393, 471
BstMBI	GATC	2 cut(s)	390, 468
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	162, 303, 310
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	11, 23
BtsI	GCAGTG	2 cut(s)	268, 408
BtsIMutI	CAGTG	4 cut(s)	268, 408, 426, 466
CfoI	GCGC	2 cut(s)	20, 197
Cfr10I	RCCGGY	2 cut(s)	110, 257
Cfr13I	GGNCC	2 cut(s)	301, 309
Csp6I	GTAC	2 cut(s)	513, 556
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	7 cut(s)	8, 100, 162, 303, 310, 327, 352
CviKI_1	RGCY	7 cut(s)	8, 100, 162, 303, 310, 327, 352
CviQI	GTAC	2 cut(s)	513, 556
DpnI	GATC	2 cut(s)	392, 470
DpnII	GATC	2 cut(s)	390, 468
EaeI	YGGCCR	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	301
FaeI	CATG	1 cut(s)	481
FaiI	YATR	4 cut(s)	191, 282, 375, 479
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	601
GlaI	GCGC	2 cut(s)	19, 196
GluI	GCNGC	1 cut(s)	229
HaeII	RGCGCY	2 cut(s)	21, 198
HaeIII	GGCC	3 cut(s)	162, 303, 310
HapII	CCGG	2 cut(s)	111, 258
HhaI	GCGC	2 cut(s)	20, 197
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	18, 195
HinP1I	GCGC	2 cut(s)	18, 195
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	5 cut(s)	419, 455, 575, 587, 596
HpaII	CCGG	2 cut(s)	111, 258
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	574, 592
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	229, 250, 388, 570
HpyCH4III	ACNGT	4 cut(s)	118, 251, 430, 517
HpyCH4V	TGCA	5 cut(s)	71, 168, 290, 373, 401
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	18, 195
KpnI	GGTACC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	390, 468
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	392, 470
MboI	GATC	2 cut(s)	390, 468
MboII	GAAGA	2 cut(s)	555, 570
MflI	RGATCY	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	285, 495, 549
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	464, 581, 590
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	7 cut(s)	101, 113, 146, 182, 322, 459, 498
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	74, 149
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	2 cut(s)	111, 258
NdeII	GATC	2 cut(s)	390, 468
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	419, 575
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	3 cut(s)	463, 581, 590
PpsI	GAGTC	3 cut(s)	463, 581, 590
PsiI	TTATAA	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	2 cut(s)	301, 309
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	2 cut(s)	514, 557
RsaNI	GTAC	2 cut(s)	513, 556
SaqAI	TTAA	2 cut(s)	74, 149
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	390, 468
Sau96I	GGNCC	2 cut(s)	301, 309
SchI	GAGTC	3 cut(s)	464, 581, 590
SetI	ASST	6 cut(s)	82, 93, 102, 174, 354, 380
Sse9I	AATT	3 cut(s)	285, 495, 549
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	601
TaaI	ACNGT	4 cut(s)	118, 251, 430, 517
TasI	AATT	3 cut(s)	285, 495, 549
TfiI	GAWTC	2 cut(s)	419, 575
Tru1I	TTAA	2 cut(s)	74, 149
Tru9I	TTAA	2 cut(s)	74, 149
TscAI	CASTG	4 cut(s)	268, 408, 433, 466
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	4 cut(s)	268, 408, 433, 466
XspI	CTAG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.