Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003054

Physical Location & Seq

Genomic Coordinates Forward (+)

11506633 .. 11508592

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGGGTTCTACTAGCACTTCCTCCAATACAGTGTCATTGTTAACAACCAAAAAGAAAACTGTCAAAGACAAAACATTCACAGCAGCAGGCAACCTCATCAAGGTCCTCCCAACCGGCACCGTCTTCTTGTTCCAGTTCCTCAACCCTGTCTTGTCCAACACTGGCCACTGCGCCACCGTCAACAAATTCCTAAGCGCCATTCTCATCGCCATTTCAGGTTTCTCTTGCTGTTTTGCTTCCTTCACTGATAGTTACAAGGGCAGTGATGGAAAAACCCACTATGGGGTTGCAACAGCTAAGGGTCTTTGGCCCTCAAGAAATTCCAACTCCGTGGACTTGTCTGCTTACAAGCTTAGGTTTGGGGACTTTGTGCATGCCTTCTTTTCCTTGATTGTGTTTGCAGTTGTATCACTTTTGGACACCAACAGTGTCAGGTGCTTCTATCCAGGGTTTGAGTCCAGTGAGAAGGTTTTGCTGCAGGTGTTGCCTCCTGTCATCGGTGTAATTGCCTGTACTGTTTTCTGCGTGTTCCCTAATCATCGCCATGGAATCGGATACCCCTCCTCAAGTTCTGATTCTTCACAAGACTCAGACAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

202

Amino Acids

21.51

Weight (kDa)

9.05

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21550
fragaria_vesca	FvH4_4g16720
malus_domestica	MD13G1177000.v1.1 MD13G1177200.v1.1 MD15G1004000.v1.1 MD16G1178800.v1.1
prunus_persica	Prupe.1G146100_v2.0.a1 Prupe.1G146200_v2.0.a1 Prupe.1G146300_v2.0.a1 Prupe.1G146400_v2.0.a1
pyrus_communis	pycom16g15020
rosa_chinensis	RchiOBHm_Chr4g0420171 RchiOBHm_Chr4g0420251 RchiOBHm_Chr4g0420271
rosa_laevigata	RLG00000007779 RLG00000007781 RLG00000007784
rosa_multiflora	Rmu_sc0001767.1_g000016 Rmu_sc0004455.1_g000002 Rmu_sc0004455.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362770 Rroxscaffold_5G00362870 Rroxscaffold_5G00362890
rosa_rugosa	Rorug04G0161900 Rorug04G0162700 Rorug04G0162900
rosa_samantha	Rh4AG223600 Rh4BG226200 Rh4BG226600 Rh4BG226800 Rh4CG237000 Rh4CG237200 Rh4CG237500 Rh4DG222400 Rh4DG222500
rosa_wichuraiana	Rw4G019250 Rw4G019260 Rw4G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	188, 322
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	4 cut(s)	103, 285, 286, 500
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	2 cut(s)	299, 355
AluI	AGCT	2 cut(s)	299, 355
AoxI	GGCC	2 cut(s)	166, 311
ApeKI	GCWGC	2 cut(s)	86, 478
ApoI	RAATTY	2 cut(s)	188, 322
AspLEI	GCGC	2 cut(s)	176, 200
AspS9I	GGNCC	2 cut(s)	106, 312
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	98, 465
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	551
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	2 cut(s)	87, 479
BlsI	GCNGC	2 cut(s)	88, 480
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 312
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	118
Bpu10I	CCTNAGC	3 cut(s)	194, 300, 356
BpuEI	CTTGAG	2 cut(s)	301, 553
BsaJI	CCNNGG	3 cut(s)	333, 449, 547
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 285, 286, 500
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	3 cut(s)	136, 169, 462
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	333, 449, 547
BseLI	CCNNNNNNNGG	4 cut(s)	103, 285, 286, 500
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	3 cut(s)	136, 169, 462
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	98, 465
BshFI	GGCC	2 cut(s)	168, 313
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	4 cut(s)	103, 285, 286, 500
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	168, 313
Bsp19I	CCATGG	1 cut(s)	547
BspANI	GGCC	2 cut(s)	168, 313
BspCNI	CTCAG	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	3 cut(s)	136, 169, 462
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	333, 449, 547
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	6 cut(s)	34, 64, 124, 181, 431, 520
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	91, 378
BstDEI	CTNAG	4 cut(s)	194, 300, 356, 592
BstDSI	CCRYGG	2 cut(s)	333, 547
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	176, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	98, 465
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	168, 313
BtgI	CCRYGG	2 cut(s)	333, 547
BtgZI	GCGATG	2 cut(s)	193, 527
BtsI	GCAGTG	2 cut(s)	169, 271
BtsIMutI	CAGTG	7 cut(s)	39, 162, 169, 246, 271, 436, 469
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	91, 378
CfoI	GCGC	2 cut(s)	176, 200
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	106, 312
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	377, 548
CviJI	RGCY	4 cut(s)	168, 299, 313, 355
CviKI_1	RGCY	4 cut(s)	168, 299, 313, 355
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	4 cut(s)	194, 300, 356, 592
EaeI	YGGCCR	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	380, 551
FaiI	YATR	3 cut(s)	285, 378, 549
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	376, 547
Fnu4HI	GCNGC	2 cut(s)	87, 479
Fsp4HI	GCNGC	2 cut(s)	87, 479
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	175, 199
GluI	GCNGC	2 cut(s)	87, 479
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	168, 313
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	176, 200
Hin1II	CATG	2 cut(s)	380, 551
Hin6I	GCGC	2 cut(s)	174, 198
HinP1I	GCGC	2 cut(s)	174, 198
HincII	GTYRAC	2 cut(s)	45, 184
HindII	GTYRAC	2 cut(s)	45, 184
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	458, 552, 578, 590
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	3 cut(s)	45, 184, 337
Hpy188I	TCNGA	3 cut(s)	557, 577, 595
Hpy188III	TCNNGA	2 cut(s)	318, 603
Hpy8I	GTNNAC	3 cut(s)	45, 184, 337
HpyAV	CCTTC	3 cut(s)	253, 391, 463
HpyCH4III	ACNGT	6 cut(s)	34, 64, 124, 181, 431, 520
HpyCH4V	TGCA	4 cut(s)	293, 376, 404, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	4 cut(s)	194, 300, 356, 592
Hsp92II	CATG	2 cut(s)	380, 551
HspAI	GCGC	2 cut(s)	174, 198
KspAI	GTTAAC	1 cut(s)	45
Lsp1109I	GCAGC	2 cut(s)	98, 465
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	254
MboII	GAAGA	2 cut(s)	118, 573
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	188, 322, 507
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	467, 584
MmeI	TCCRAC	2 cut(s)	183, 351
MnlI	CCTC	8 cut(s)	34, 107, 119, 152, 325, 501, 574, 577
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	547
NlaIII	CATG	2 cut(s)	380, 551
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	552, 578
PkrI	GCNGC	2 cut(s)	88, 480
PleI	GAGTC	2 cut(s)	466, 584
PpsI	GAGTC	2 cut(s)	466, 584
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	106, 312
PspPPI	RGGWCCY	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	483
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	2 cut(s)	87, 479
Sau96I	GGNCC	2 cut(s)	106, 312
SchI	GAGTC	2 cut(s)	467, 584
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	9 cut(s)	99, 108, 223, 301, 357, 362, 440, 474, 486
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	316, 568
SmoI	CTYRAG	2 cut(s)	316, 568
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	188, 322, 507
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	6 cut(s)	34, 64, 124, 181, 431, 520
TasI	AATT	3 cut(s)	188, 322, 507
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	2 cut(s)	552, 578
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	7 cut(s)	39, 169, 176, 253, 271, 436, 469
TseI	GCWGC	2 cut(s)	86, 478
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	7 cut(s)	39, 169, 176, 253, 271, 436, 469
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	188, 322
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.