Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001767.1

Orthogroup ID

OG0003054

Physical Location & Seq

Genomic Coordinates Forward (+)

91780 .. 92334

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001767.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggtgtcaaagacattgcattaacaggtgtaggcaacctcatcagggtcctccctaccggcacggtattcttgttccagttcctcaaccccgttttaaccaacaatggcgaatgcaacatgtccgtcaacaagattctaagcgccattttcattgccgtttccgccttctcttgctgctttgcttccttcaccgacagttacaccggcagtgatggaaaaactcactatggaattgcaacaacaaagggtctttggccctcaaccagttctggctctgtgaacttgtctgcttacaagcttcgggttggggactttgtgcatgccttctttgccttgatcgtgtttgcagtggtatcacttttggattccaacactgtgaggtgcttctatcctgcatttgagtccactgagaaggttctgctgcaggcgttgcctcttgtaattggcactattgctggtactgtctttgttgtgttccctaatacacgccacggaattgggtacccttattcaagttctgatgctacacaagactcggaggacgactcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

184

Amino Acids

19.66

Weight (kDa)

5.45

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21550
fragaria_vesca	FvH4_4g16720
malus_domestica	MD13G1177000.v1.1 MD13G1177200.v1.1 MD15G1004000.v1.1 MD16G1178800.v1.1
prunus_persica	Prupe.1G146100_v2.0.a1 Prupe.1G146200_v2.0.a1 Prupe.1G146300_v2.0.a1 Prupe.1G146400_v2.0.a1
pyrus_communis	pycom16g15020
rosa_chinensis	RchiOBHm_Chr4g0420171 RchiOBHm_Chr4g0420251 RchiOBHm_Chr4g0420271
rosa_laevigata	RLG00000007779 RLG00000007781 RLG00000007784
rosa_multiflora	Rmu_sc0001767.1_g000016 Rmu_sc0004455.1_g000002 Rmu_sc0004455.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362770 Rroxscaffold_5G00362870 Rroxscaffold_5G00362890
rosa_rugosa	Rorug04G0161900 Rorug04G0162700 Rorug04G0162900
rosa_samantha	Rh4AG223600 Rh4BG226200 Rh4BG226600 Rh4BG226800 Rh4CG237000 Rh4CG237200 Rh4CG237500 Rh4DG222400 Rh4DG222500
rosa_wichuraiana	Rw4G019250 Rw4G019260 Rw4G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	504
AciI	CCGC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	463, 506
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	516
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	177, 424
Asp718I	GGTACC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	49, 258
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	164, 411
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	553
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	2 cut(s)	178, 425
BlsI	GCNGC	2 cut(s)	179, 426
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 258
BmiI	GGNNCC	2 cut(s)	50, 506
BmsI	GCATC	1 cut(s)	514
BplI	GAGNNNNNCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	2 cut(s)	59, 206
Bse1I	ACTGG	2 cut(s)	79, 267
Bse3DI	GCAATG	2 cut(s)	15, 153
BseDI	CCNNGG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	2 cut(s)	15, 153
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	79, 267
BseXI	GCAGC	2 cut(s)	164, 411
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	60, 207
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	50, 506
BspMAI	CTGCAG	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	504
BsrDI	GCAATG	2 cut(s)	15, 153
BsrFI	RCCGGY	2 cut(s)	59, 206
BsrI	ACTGG	2 cut(s)	79, 267
BssAI	RCCGGY	2 cut(s)	59, 206
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	67, 200, 379, 466
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	324, 429
BstDEI	CTNAG	2 cut(s)	140, 411
BstDSI	CCRYGG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 332, 433
BstNSI	RCATGY	2 cut(s)	124, 326
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	164, 411
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	493
BtsI	GCAGTG	2 cut(s)	217, 357
BtsIMutI	CAGTG	4 cut(s)	217, 357, 375, 408
Cac8I	GCNNGC	2 cut(s)	324, 429
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	59, 206
Cfr13I	GGNCC	2 cut(s)	49, 258
Csp6I	GTAC	2 cut(s)	462, 505
CviAII	CATG	2 cut(s)	121, 323
CviJI	RGCY	3 cut(s)	259, 276, 301
CviKI_1	RGCY	3 cut(s)	259, 276, 301
CviQI	GTAC	2 cut(s)	462, 505
DdeI	CTNAG	2 cut(s)	140, 411
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	49
FaeI	CATG	2 cut(s)	124, 326
FaiI	YATR	3 cut(s)	122, 231, 324
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	120, 322
Fnu4HI	GCNGC	2 cut(s)	178, 425
Fsp4HI	GCNGC	2 cut(s)	178, 425
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	178, 425
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	60, 207
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	124, 326
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	5 cut(s)	136, 368, 404, 536, 548
HpaII	CCGG	2 cut(s)	60, 207
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	3 cut(s)	130, 283, 408
Hpy188I	TCNGA	2 cut(s)	523, 541
Hpy8I	GTNNAC	3 cut(s)	130, 283, 408
HpyAV	CCTTC	4 cut(s)	178, 199, 337, 409
HpyCH4III	ACNGT	4 cut(s)	67, 200, 379, 466
HpyCH4V	TGCA	7 cut(s)	20, 117, 239, 322, 350, 398, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 332, 433
HpyF3I	CTNAG	2 cut(s)	140, 411
Hsp92II	CATG	2 cut(s)	124, 326
HspAI	GCGC	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	339
Lsp1109I	GCAGC	2 cut(s)	164, 411
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	553
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MluCI	AATT	3 cut(s)	234, 444, 498
MlyI	GAGTC	3 cut(s)	413, 530, 542
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	50, 62, 95, 271, 375, 447, 535
MseI	TTAA	2 cut(s)	23, 98
MspI	CCGG	2 cut(s)	60, 207
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	164, 332, 433
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	124, 326
NlaIV	GGNNCC	2 cut(s)	50, 506
NspI	RCATGY	2 cut(s)	124, 326
PaeI	GCATGC	1 cut(s)	326
PciI	ACATGT	1 cut(s)	120
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	136, 368
PkrI	GCNGC	2 cut(s)	179, 426
PleI	GAGTC	3 cut(s)	412, 530, 542
PpsI	GAGTC	3 cut(s)	412, 530, 542
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	50, 506
PspPI	GGNCC	2 cut(s)	49, 258
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	429
RsaI	GTAC	2 cut(s)	463, 506
RsaNI	GTAC	2 cut(s)	462, 505
SaqAI	TTAA	2 cut(s)	23, 98
SatI	GCNGC	2 cut(s)	178, 425
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	49, 258
SchI	GAGTC	3 cut(s)	413, 530, 542
SetI	ASST	5 cut(s)	31, 42, 303, 386, 420
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	3 cut(s)	234, 444, 498
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	553
TaaI	ACNGT	4 cut(s)	67, 200, 379, 466
TasI	AATT	3 cut(s)	234, 444, 498
TfiI	GAWTC	2 cut(s)	136, 368
Tru1I	TTAA	2 cut(s)	23, 98
Tru9I	TTAA	2 cut(s)	23, 98
TscAI	CASTG	4 cut(s)	217, 357, 382, 415
TseI	GCWGC	2 cut(s)	177, 424
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	2 cut(s)	115, 510
TspRI	CASTG	4 cut(s)	217, 357, 382, 415
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	2 cut(s)	124, 326
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.