Rorug04G0161900

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003054
Physical Location & Seq
Reverse (-)
28161437 .. 28165814
4378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0161900.1

Sequence Viewer

Length: 1557 bp
ATGTTTAAAGCAACTCTGAACAAGACCAAGGAAAACAATAAGCGTGCGTACCAGCCACCAACGCGTCCTCTATCATGCCCTCAACCTCAACCAACCATACAACAGTCATTGCTCACTCGAACTAGGGAGAGCCGGTTTGCAGGTGGAGTTGGCCATTCTGTGCCTGTTTCATCTCAAGGACATATGAAGAAAACTTGTGGCAATATTCTACGGTTAGGAACTCATGCTGCAACCAATGCCACAAAGAAGAGAAATCAAATTCCGATGGATGATGAGCAATCCAGTCCAAATGAGAACTGTCATGAACCTGTGAAGAAGGCGCGTGGCATTACAAAGAATAAGTTGGGAACTCCTAGTGTGATCAATCCAAAACTGAAGAGAGTTCAAATCCCAATGGACAATGAGGAGTGTATTCCAAATGAGAATTCTAACCCTCCTTTAGATCCAGAACCTGTAAAGAAGACCCGTGGCATTACAGTAGGGTTGAAAGCTCATGCTATTGTTAGTGCGACCAAAAAGAGAATTTCAATCAAGATGGACAAGGATCAAAAGCTCCCTGAGACAGTTCAAGCCAATGCTATGTTTGTTAACCAGATTGGGTCATTCACACGCAAATTAGCTCCACTCAAATTCAAATGGTGGAGAAAAGTACCCAAGGATGCCAAGAATGACATCAAAGAGGCTCTGACAACTAATTTCGAGTTTGATTGGACCGACCCGGAGCTGAGGATATTTGTGGAGAAGAAGATGGCCAAGGCATTTGGATCTTGGAGATCCAAGTTGCATGGACATTTTAAAAAGTATGCTCATGATTTAGAATATGCTCGAGCACACCCACCCGGAGAAAAGCTCTTTGGTGAAAAATCAATAGATGAATGGGAGTGGCTTTGTGACGAGTTGTTCATAGATGAAACCTATGTGAAACGAAGTCAAGTTAATGCTGCAAATCGAAATCAGAAAGAGTATAATCATTGTGGAGGTTCACGGCCTTACCAAAAACATATGGAAGCTGCACTTAAGAAAGGTAAAAATGTGTCTTTTGTTGAGAATTGGAGCACTATGCATCAACATCATGACGGTCAGTGGATCAACGAAGCAGCTGAACAAACTGGGAAGAAAATGTTAGCAGAATTGAATCAAACAAAGGAGAAGTTAGCTGAAGTCCTTGGGGCTGCCTCACTTGATGAAATAGAAGTTCCCATCTCTATGCAGTTGGATATCTTGGCAAATGGCATTGGGGTTGCAAAGGGTAGAGGCATTCGCGGTCTGGGCTATGGTCCACGGAAGGAACCCGTCCGTTATTCTGAGAGTGAAAAATCTGCAAATGCTTCTGTGACAGAACAAAAGGTGATTGAGCTGACAGCCACGGTGGAAAAGCTTTTGAGGCATATCAATCACATAGAAGAGCAACTTGCTACTGTTGAAGGGTATACTATTCATCATTCCAGTGATGATGATGATGATGGTGATTATGATGATGGGGATGATGGTGATTATGATGATGGAGATGATGATGATGTGAATATCTATGGGGATGAAGAAGAGGGTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

518

Amino Acids

58.34

Weight (kDa)

6.67

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 293 - 424 9.8e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 1430
AccII CGCG 3 cut(s) 64, 322, 1263
AciI CCGC 1 cut(s) 1263
AclWI GGATC 5 cut(s) 437, 552, 768, 772, 1094
AcoI YGGCCR 2 cut(s) 151, 750
AcsI RAATTY 4 cut(s) 258, 424, 522, 629
AcuI CTGAAG 2 cut(s) 395, 1179
AfaI GTAC 2 cut(s) 50, 651
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 7 cut(s) 386, 487, 528, 569, 634, 1135, 1424
AjuI GAANNNNNNNTTGG 4 cut(s) 409, 441, 837, 869
Alw21I GWGCWC 2 cut(s) 832, 1058
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 5 cut(s) 437, 552, 768, 772, 1094
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 3 cut(s) 151, 750, 986
ApeKI GCWGC 5 cut(s) 227, 941, 1010, 1097, 1172
ApoI RAATTY 4 cut(s) 258, 424, 522, 629
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 711, 1277
AsuC2I CCSGG 2 cut(s) 719, 840
AsuHPI GGTGA 4 cut(s) 869, 1360, 1478, 1502
AvaI CYCGRG 1 cut(s) 825
AvaII GGWCC 2 cut(s) 711, 1277
BalI TGGCCA 2 cut(s) 153, 752
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 832, 1058
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 5 cut(s) 214, 928, 997, 1109, 1159
BccI CCATC 8 cut(s) 259, 529, 742, 1208, 1457, 1472, 1481, 1496
BceAI ACGGC 1 cut(s) 1001
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 2 cut(s) 719, 840
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 3 cut(s) 123, 354, 1555
BfrI CTTAAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 5 cut(s) 228, 942, 1011, 1098, 1173
BlsI GCNGC 5 cut(s) 229, 943, 1012, 1099, 1174
Bme1390I CCNGG 2 cut(s) 719, 840
Bme18I GGWCC 2 cut(s) 711, 1277
BmeT110I CYCGRG 1 cut(s) 825
BmgT120I GGNCC 2 cut(s) 711, 1277
BmiI GGNNCC 1 cut(s) 1290
BmrFI CCNGG 2 cut(s) 719, 840
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 2 cut(s) 649, 1072
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 834, 866
Bpu10I CCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 2 cut(s) 719, 840
BsaJI CCNNGG 7 cut(s) 27, 466, 654, 753, 1165, 1280, 1365
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 3 cut(s) 282, 1114, 1446
Bse3DI GCAATG 1 cut(s) 107
BseDI CCNNGG 7 cut(s) 27, 466, 654, 753, 1165, 1280, 1365
BseGI GGATG 4 cut(s) 274, 664, 1489, 1540
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 549, 716, 1296
BseNI ACTGG 3 cut(s) 282, 1114, 1446
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 5 cut(s) 214, 928, 997, 1109, 1159
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 3 cut(s) 64, 322, 1263
BshFI GGCC 3 cut(s) 153, 752, 988
BsiHKAI GWGCWC 2 cut(s) 832, 1058
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 3 cut(s) 133, 719, 840
BsmAI GTCTC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 1257
BsnI GGCC 3 cut(s) 153, 752, 988
BsoBI CYCGRG 1 cut(s) 825
Bsp1286I GDGCHC 2 cut(s) 832, 1058
Bsp143I GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
BspACI CCGC 1 cut(s) 1263
BspANI GGCC 3 cut(s) 153, 752, 988
BspCNI CTCAG 3 cut(s) 550, 717, 1297
BspFNI CGCG 3 cut(s) 64, 322, 1263
BspHI TCATGA 3 cut(s) 301, 808, 1072
BspLI GGNNCC 1 cut(s) 1290
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 5 cut(s) 437, 552, 768, 772, 1094
BspQI GCTCTTC 1 cut(s) 1398
BspTI CTTAAG 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 3 cut(s) 282, 1114, 1446
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 7 cut(s) 27, 466, 654, 753, 1165, 1280, 1365
BssMI GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
BssNAI GTATAC 1 cut(s) 1431
BssT1I CCWWGG 4 cut(s) 27, 654, 753, 1165
Bst1107I GTATAC 1 cut(s) 1431
Bst4CI ACNGT 8 cut(s) 105, 213, 299, 478, 565, 1079, 1369, 1420
Bst6I CTCTTC 4 cut(s) 242, 371, 1398, 1536
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 558, 725, 1305
BstDSI CCRYGG 3 cut(s) 466, 1280, 1365
BstF5I GGATG 4 cut(s) 274, 664, 1489, 1540
BstFNI CGCG 3 cut(s) 64, 322, 1263
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 6 cut(s) 363, 445, 547, 767, 776, 1089
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
BstSCI CCNGG 2 cut(s) 717, 838
BstUI CGCG 3 cut(s) 64, 322, 1263
BstV1I GCAGC 5 cut(s) 214, 928, 997, 1109, 1159
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 3 cut(s) 442, 764, 773
BstYI RGATCY 3 cut(s) 442, 764, 773
BstZ17I GTATAC 1 cut(s) 1431
BsuRI GGCC 3 cut(s) 153, 752, 988
BtgI CCRYGG 3 cut(s) 466, 1280, 1365
BtsCI GGATG 4 cut(s) 274, 664, 1489, 1540
BtsIMutI CAGTG 2 cut(s) 1088, 1453
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 3 cut(s) 301, 808, 1072
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 711, 1277
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 49, 650
CviAII CATG 7 cut(s) 75, 224, 302, 494, 785, 809, 1073
CviQI GTAC 2 cut(s) 49, 650
DdeI CTNAG 3 cut(s) 558, 725, 1305
DpnI GATC 6 cut(s) 362, 444, 546, 766, 775, 1088
DpnII GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
DraI TTTAAA 2 cut(s) 7, 796
EaeI YGGCCR 2 cut(s) 151, 750
Eam1104I CTCTTC 4 cut(s) 242, 371, 1398, 1536
EarI CTCTTC 4 cut(s) 242, 371, 1398, 1536
Eco130I CCWWGG 4 cut(s) 27, 654, 753, 1165
Eco32I GATATC 1 cut(s) 1219
Eco47I GGWCC 2 cut(s) 711, 1277
Eco57I CTGAAG 2 cut(s) 395, 1179
Eco88I CYCGRG 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 424
EcoRV GATATC 1 cut(s) 1219
EcoT14I CCWWGG 4 cut(s) 27, 654, 753, 1165
EcoT22I ATGCAT 1 cut(s) 1065
ErhI CCWWGG 4 cut(s) 27, 654, 753, 1165
FaeI CATG 7 cut(s) 78, 227, 305, 497, 788, 812, 1076
FalI AAGNNNNNCTT 4 cut(s) 999, 1031, 1395, 1427
FatI CATG 7 cut(s) 74, 223, 301, 493, 784, 808, 1072
FauNDI CATATG 2 cut(s) 183, 1002
FbaI TGATCA 1 cut(s) 360
FblI GTMKAC 1 cut(s) 1430
Fnu4HI GCNGC 5 cut(s) 228, 942, 1011, 1098, 1173
FokI GGATG 4 cut(s) 281, 671, 1496, 1547
Fsp4HI GCNGC 5 cut(s) 228, 942, 1011, 1098, 1173
FspBI CTAG 3 cut(s) 123, 354, 1555
GlaI GCGC 1 cut(s) 321
GluI GCNGC 5 cut(s) 228, 942, 1011, 1098, 1173
HaeIII GGCC 3 cut(s) 153, 752, 988
HapII CCGG 3 cut(s) 133, 719, 840
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 322
Hin1II CATG 7 cut(s) 78, 227, 305, 497, 788, 812, 1076
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 1376
HinfI GANTC 1 cut(s) 1135
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 133, 719, 840
HphI GGTGA 4 cut(s) 869, 1360, 1478, 1502
Hpy166II GTNNAC 4 cut(s) 589, 983, 1280, 1431
Hpy188I TCNGA 5 cut(s) 18, 264, 687, 957, 1306
Hpy188III TCNNGA 5 cut(s) 302, 446, 532, 809, 1073
Hpy8I GTNNAC 4 cut(s) 589, 983, 1280, 1431
HpyAV CCTTC 3 cut(s) 310, 1279, 1418
HpyCH4III ACNGT 8 cut(s) 105, 213, 299, 478, 565, 1079, 1369, 1420
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
HpyF3I CTNAG 3 cut(s) 558, 725, 1305
Hsp92II CATG 7 cut(s) 78, 227, 305, 497, 788, 812, 1076
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 360
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
LguI GCTCTTC 1 cut(s) 1398
LmnI GCTCC 4 cut(s) 558, 625, 721, 1053
Lsp1109I GCAGC 5 cut(s) 214, 928, 997, 1109, 1159
LweI GCATC 2 cut(s) 649, 1072
MaeI CTAG 3 cut(s) 123, 354, 1555
MaeIII GTNAC 2 cut(s) 890, 1333
MalI GATC 6 cut(s) 362, 444, 546, 766, 775, 1088
MboI GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
MflI RGATCY 3 cut(s) 442, 764, 773
MhlI GDGCHC 2 cut(s) 832, 1058
MlsI TGGCCA 2 cut(s) 153, 752
MluCI AATT 8 cut(s) 258, 424, 522, 614, 629, 694, 1048, 1130
MluI ACGCGT 1 cut(s) 62
MluNI TGGCCA 2 cut(s) 153, 752
MmeI TCCRAC 1 cut(s) 1194
Mox20I TGGCCA 2 cut(s) 153, 752
Mph1103I ATGCAT 1 cut(s) 1065
MscI TGGCCA 2 cut(s) 153, 752
MseI TTAA 5 cut(s) 6, 588, 795, 936, 1017
MslI CAYNNNNRTG 2 cut(s) 1205, 1446
Msp20I TGGCCA 2 cut(s) 153, 752
MspA1I CMGCKG 1 cut(s) 1100
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 3 cut(s) 133, 719, 840
MspR9I CCNGG 2 cut(s) 719, 840
Mva1269I GAATGC 1 cut(s) 1257
MvnI CGCG 3 cut(s) 64, 322, 1263
MwoI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
NciI CCSGG 2 cut(s) 719, 840
NdeI CATATG 2 cut(s) 183, 1002
NdeII GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
NlaIII CATG 7 cut(s) 78, 227, 305, 497, 788, 812, 1076
NlaIV GGNNCC 1 cut(s) 1290
NmuCI GTSAC 2 cut(s) 890, 1333
NsiI ATGCAT 1 cut(s) 1065
PaeR7I CTCGAG 1 cut(s) 825
PagI TCATGA 3 cut(s) 301, 808, 1072
PaqCI CACCTGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 1398
PctI GAATGC 1 cut(s) 1257
PfeI GAWTC 1 cut(s) 1135
PkrI GCNGC 5 cut(s) 229, 943, 1012, 1099, 1174
PspN4I GGNNCC 1 cut(s) 1290
PspPI GGNCC 2 cut(s) 711, 1277
PspXI VCTCGAGB 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 3 cut(s) 442, 764, 773
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 2 cut(s) 50, 651
RsaNI GTAC 2 cut(s) 49, 650
RseI CAYNNNNRTG 2 cut(s) 1205, 1446
SapI GCTCTTC 1 cut(s) 1398
SaqAI TTAA 5 cut(s) 6, 588, 795, 936, 1017
SatI GCNGC 5 cut(s) 228, 942, 1011, 1098, 1173
Sau3AI GATC 6 cut(s) 360, 442, 544, 764, 773, 1086
Sau96I GGNCC 2 cut(s) 711, 1277
ScrFI CCNGG 2 cut(s) 719, 840
SduI GDGCHC 2 cut(s) 832, 1058
SfaNI GCATC 2 cut(s) 649, 1072
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 711, 1277
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 2 cut(s) 1205, 1446
SmlI CTYRAG 3 cut(s) 174, 825, 1016
SmoI CTYRAG 3 cut(s) 174, 825, 1016
Sse9I AATT 8 cut(s) 258, 424, 522, 614, 629, 694, 1048, 1130
SsiI CCGC 1 cut(s) 1263
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 123, 354, 1555
StyD4I CCNGG 2 cut(s) 717, 838
StyI CCWWGG 4 cut(s) 27, 654, 753, 1165
TaaI ACNGT 8 cut(s) 105, 213, 299, 478, 565, 1079, 1369, 1420
TaqI TCGA 4 cut(s) 118, 699, 826, 949
TaqII GACCGA 1 cut(s) 728
TasI AATT 8 cut(s) 258, 424, 522, 614, 629, 694, 1048, 1130
TfiI GAWTC 1 cut(s) 1135
Tru1I TTAA 5 cut(s) 6, 588, 795, 936, 1017
Tru9I TTAA 5 cut(s) 6, 588, 795, 936, 1017
TscAI CASTG 2 cut(s) 1088, 1453
TseFI GTSAC 2 cut(s) 890, 1333
TseI GCWGC 5 cut(s) 227, 941, 1010, 1097, 1172
Tsp45I GTSAC 2 cut(s) 890, 1333
TspDTI ATGAA 9 cut(s) 159, 200, 318, 888, 892, 924, 1200, 1427, 1551
TspGWI ACGGA 2 cut(s) 1286, 1297
TspRI CASTG 2 cut(s) 1088, 1453
Vha464I CTTAAG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 711, 1277
XapI RAATTY 4 cut(s) 258, 424, 522, 629
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 1430
XspI CTAG 3 cut(s) 123, 354, 1555
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.