Rw4G019290

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003054
Physical Location & Seq
Reverse (-)
42508827 .. 42509816
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019290.1

Sequence Viewer

Length: 555 bp
ATGGGTGTCAAAGACATTGCATTAACAGGTGTAGGCAACCTCATCAGGGTCCTCCCTACCGGCACGGTATTCTTGTTCCAGTTCCTCAACCCCGTTTTAACCAACAATGGCCAATGCAACATGTCAGTCAACAAGATTCTAAGCGCCATTTTCATTGCCGTTTCGGCCTTCTCTTGCTGCTTTGCTTCCTTCACCGACAGTTACACCGGCAGTGATGGAAAAACTCACTATGGAATTGCAACAACAAAGGGTCTTTGGCCCTCAACCAGTTCTGGCTCTGTGGACTTGTCTGCTTACAAGCTTCGGGTTGGGGACTTTGTGCATGCCTTCTTTGCCTTGATCGTGTTTGCAGTGGTATCACTTTTGGATTCCAACACTGTGAGGTGCTTCTATCCTGCATTTGAGTCCACTGAGAAGGTTCTGCTGCAGGCGTTGCCTCCTGTAATTGGCACTATTGCTGGTACTGTCTTTGTTGTGTTCCCTAATACACGCCACGGAATTGGGTACCCTTATTCAAGTTCTGATGCTACACAAGACTCGGAGGACGACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

184

Amino Acids

19.65

Weight (kDa)

5.43

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 10 - 169 5.5e-63 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AcoI YGGCCR 1 cut(s) 109
AfaI GTAC 2 cut(s) 463, 506
AfiI CCNNNNNNNGG 2 cut(s) 46, 446
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 516
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AoxI GGCC 3 cut(s) 109, 165, 257
ApeKI GCWGC 2 cut(s) 177, 424
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 49, 258
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 164, 411
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 143
BfaI CTAG 1 cut(s) 553
BfmI CTRYAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 2 cut(s) 178, 425
BlsI GCNGC 2 cut(s) 179, 426
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 258
BmiI GGNNCC 2 cut(s) 50, 506
BmsI GCATC 1 cut(s) 514
BplI GAGNNNNNCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 493
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 446
Bse118I RCCGGY 2 cut(s) 59, 206
Bse1I ACTGG 2 cut(s) 79, 267
Bse3DI GCAATG 2 cut(s) 15, 153
BseDI CCNNGG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 46, 446
BseMI GCAATG 2 cut(s) 15, 153
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 79, 267
BseXI GCAGC 2 cut(s) 164, 411
BshFI GGCC 3 cut(s) 111, 167, 259
BshNI GGYRCC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 60, 207
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 46, 446
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 3 cut(s) 111, 167, 259
Bsp143I GATC 1 cut(s) 339
BspANI GGCC 3 cut(s) 111, 167, 259
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 50, 506
BspMAI CTGCAG 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 15, 153
BsrFI RCCGGY 2 cut(s) 59, 206
BsrI ACTGG 2 cut(s) 79, 267
BssAI RCCGGY 2 cut(s) 59, 206
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 1 cut(s) 339
Bst4CI ACNGT 4 cut(s) 67, 200, 379, 466
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 324, 429
BstDEI CTNAG 2 cut(s) 140, 411
BstDSI CCRYGG 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 342
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 3 cut(s) 164, 332, 433
BstNSI RCATGY 2 cut(s) 124, 326
BstSFI CTRYAG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 164, 411
BstXI CCANNNNNNTGG 1 cut(s) 500
BsuRI GGCC 3 cut(s) 111, 167, 259
BtgI CCRYGG 1 cut(s) 493
BtsI GCAGTG 2 cut(s) 217, 357
BtsIMutI CAGTG 4 cut(s) 217, 357, 375, 408
Cac8I GCNNGC 2 cut(s) 324, 429
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 2 cut(s) 59, 206
Cfr13I GGNCC 2 cut(s) 49, 258
Csp6I GTAC 2 cut(s) 462, 505
CviAII CATG 2 cut(s) 121, 323
CviJI RGCY 5 cut(s) 111, 167, 259, 276, 301
CviKI_1 RGCY 5 cut(s) 111, 167, 259, 276, 301
CviQI GTAC 2 cut(s) 462, 505
DdeI CTNAG 2 cut(s) 140, 411
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 49
FaeI CATG 2 cut(s) 124, 326
FaiI YATR 3 cut(s) 122, 231, 324
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 120, 322
Fnu4HI GCNGC 2 cut(s) 178, 425
Fsp4HI GCNGC 2 cut(s) 178, 425
FspBI CTAG 1 cut(s) 553
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 178, 425
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 3 cut(s) 111, 167, 259
HapII CCGG 2 cut(s) 60, 207
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 124, 326
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 5 cut(s) 136, 368, 404, 536, 548
HpaII CCGG 2 cut(s) 60, 207
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 130, 283, 408
Hpy188I TCNGA 2 cut(s) 523, 541
Hpy8I GTNNAC 3 cut(s) 130, 283, 408
HpyAV CCTTC 4 cut(s) 178, 199, 337, 409
HpyCH4III ACNGT 4 cut(s) 67, 200, 379, 466
HpyCH4V TGCA 7 cut(s) 20, 117, 239, 322, 350, 398, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 332, 433
HpyF3I CTNAG 2 cut(s) 140, 411
Hsp92II CATG 2 cut(s) 124, 326
HspAI GCGC 1 cut(s) 144
KpnI GGTACC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 339
Lsp1109I GCAGC 2 cut(s) 164, 411
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 553
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 3 cut(s) 234, 444, 498
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 3 cut(s) 413, 530, 542
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 7 cut(s) 50, 62, 95, 271, 375, 447, 535
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 2 cut(s) 23, 98
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 2 cut(s) 60, 207
MwoI GCNNNNNNNGC 3 cut(s) 164, 332, 433
NdeII GATC 1 cut(s) 339
NlaIII CATG 2 cut(s) 124, 326
NlaIV GGNNCC 2 cut(s) 50, 506
NspI RCATGY 2 cut(s) 124, 326
PaeI GCATGC 1 cut(s) 326
PciI ACATGT 1 cut(s) 120
PfeI GAWTC 2 cut(s) 136, 368
PkrI GCNGC 2 cut(s) 179, 426
PleI GAGTC 3 cut(s) 412, 530, 542
PpsI GAGTC 3 cut(s) 412, 530, 542
PpuMI RGGWCCY 1 cut(s) 49
PscI ACATGT 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 50, 506
PspPI GGNCC 2 cut(s) 49, 258
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 429
RsaI GTAC 2 cut(s) 463, 506
RsaNI GTAC 2 cut(s) 462, 505
SaqAI TTAA 2 cut(s) 23, 98
SatI GCNGC 2 cut(s) 178, 425
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 2 cut(s) 49, 258
SchI GAGTC 3 cut(s) 413, 530, 542
SetI ASST 5 cut(s) 31, 42, 303, 386, 420
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 49
SphI GCATGC 1 cut(s) 326
Sse9I AATT 3 cut(s) 234, 444, 498
SspMI CTAG 1 cut(s) 553
TaaI ACNGT 4 cut(s) 67, 200, 379, 466
TasI AATT 3 cut(s) 234, 444, 498
TfiI GAWTC 2 cut(s) 136, 368
Tru1I TTAA 2 cut(s) 23, 98
Tru9I TTAA 2 cut(s) 23, 98
TscAI CASTG 4 cut(s) 217, 357, 382, 415
TseI GCWGC 2 cut(s) 177, 424
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 4 cut(s) 217, 357, 382, 415
VpaK11BI GGWCC 1 cut(s) 49
XceI RCATGY 2 cut(s) 124, 326
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.