RLG00000007779

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003054
Physical Location & Seq
Forward (+)
20962613 .. 20963485
873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007779

Sequence Viewer

Length: 513 bp
ATGGGTGTCAAAGACATTGCATTAACAGGTGTAGGCAACCTCATCAGGCTCCTCCCTACCGGCACGGTATTCTTGTTCCAGTTCCTCAACCCCGTTTTAACCAACAATGGCCAATGCAACATGTCCGTCAACAAGATTCTAAGCGCCATTTTCATTGCCGTTTCCGCCTTCTCTTGCTGCTTTGCTTCCTTCACCGACAGTTACACCGGCAGTGATGGACAAACTCACTATGGAATTGCAACAACAAAGGGTCTTTGGCCCTCAACCAGTTCTGGCTCTGTGGACTTGTCTGCTTACAAGCTTCGGGTTGGGGACTTTGTGCATGCCTTCTTTTCCTTGATCGTGTTTGCAGGGTTATCACTTTTGGATTCCAACACCGTGAGGTGCTTCTATCCTGCATTTGAGTCCACTGAGAAGGTTCTGCTGCAGGCGTTGCCTCCTGTAATTGGCACTATAGCTGGTACTGTCTTTGTTGTGTTCCCTAATACACGCCACGGGATTGGAGACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

171

Amino Acids

18.13

Weight (kDa)

6.8

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 10 - 168 2.1e-62 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 109
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 120
AluBI AGCT 2 cut(s) 301, 458
AluI AGCT 2 cut(s) 301, 458
Alw26I GTCTC 1 cut(s) 498
AoxI GGCC 2 cut(s) 109, 257
ApeKI GCWGC 2 cut(s) 177, 424
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 184
BalI TGGCCA 1 cut(s) 111
BbvI GCAGC 2 cut(s) 164, 411
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 3 cut(s) 425, 453, 509
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 178, 425
BlsI GCNGC 2 cut(s) 179, 426
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 493
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 2 cut(s) 59, 206
Bse1I ACTGG 2 cut(s) 79, 267
Bse3DI GCAATG 2 cut(s) 15, 153
BseDI CCNNGG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 2 cut(s) 15, 153
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 79, 267
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 164, 411
BshFI GGCC 2 cut(s) 111, 259
BsiSI CCGG 2 cut(s) 60, 207
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 111, 259
Bso31I GGTCTC 1 cut(s) 498
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 111, 259
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 50
BspMAI CTGCAG 1 cut(s) 429
BspTNI GGTCTC 1 cut(s) 498
BsrDI GCAATG 2 cut(s) 15, 153
BsrFI RCCGGY 2 cut(s) 59, 206
BsrI ACTGG 2 cut(s) 79, 267
BssAI RCCGGY 2 cut(s) 59, 206
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 1 cut(s) 339
Bst4CI ACNGT 4 cut(s) 67, 200, 379, 466
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 324, 429
BstDEI CTNAG 2 cut(s) 140, 411
BstDSI CCRYGG 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 2 cut(s) 164, 433
BstNSI RCATGY 2 cut(s) 124, 326
BstSFI CTRYAG 3 cut(s) 425, 453, 509
BstV1I GCAGC 2 cut(s) 164, 411
BstXI CCANNNNNNTGG 1 cut(s) 500
BsuRI GGCC 2 cut(s) 111, 259
BtgI CCRYGG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 408
Cac8I GCNNGC 2 cut(s) 324, 429
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 2 cut(s) 59, 206
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 462
CviAII CATG 2 cut(s) 121, 323
CviJI RGCY 6 cut(s) 49, 111, 259, 276, 301, 458
CviKI_1 RGCY 6 cut(s) 49, 111, 259, 276, 301, 458
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 140, 411
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 498
FaeI CATG 2 cut(s) 124, 326
FaiI YATR 5 cut(s) 122, 231, 324, 455, 511
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 120, 322
Fnu4HI GCNGC 2 cut(s) 178, 425
Fsp4HI GCNGC 2 cut(s) 178, 425
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 178, 425
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 111, 259
HapII CCGG 2 cut(s) 60, 207
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 124, 326
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 3 cut(s) 136, 368, 404
HpaII CCGG 2 cut(s) 60, 207
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 130, 283, 408
Hpy8I GTNNAC 3 cut(s) 130, 283, 408
HpyAV CCTTC 4 cut(s) 178, 199, 337, 409
HpyCH4III ACNGT 4 cut(s) 67, 200, 379, 466
HpyCH4V TGCA 7 cut(s) 20, 117, 239, 322, 350, 398, 427
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 433
HpyF3I CTNAG 2 cut(s) 140, 411
Hsp92II CATG 2 cut(s) 124, 326
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 2 cut(s) 164, 411
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 2 cut(s) 234, 444
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 6 cut(s) 50, 62, 95, 271, 375, 447
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 2 cut(s) 23, 98
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 2 cut(s) 60, 207
MwoI GCNNNNNNNGC 2 cut(s) 164, 433
NdeII GATC 1 cut(s) 339
NlaIII CATG 2 cut(s) 124, 326
NlaIV GGNNCC 1 cut(s) 50
NspI RCATGY 2 cut(s) 124, 326
PaeI GCATGC 1 cut(s) 326
PciI ACATGT 1 cut(s) 120
PfeI GAWTC 2 cut(s) 136, 368
PkrI GCNGC 2 cut(s) 179, 426
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PscI ACATGT 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 429
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 23, 98
SatI GCNGC 2 cut(s) 178, 425
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 413
SetI ASST 7 cut(s) 31, 42, 303, 386, 420, 460, 510
SfcI CTRYAG 3 cut(s) 425, 453, 509
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 234, 444
SsiI CCGC 1 cut(s) 165
TaaI ACNGT 4 cut(s) 67, 200, 379, 466
TasI AATT 2 cut(s) 234, 444
TfiI GAWTC 2 cut(s) 136, 368
Tru1I TTAA 2 cut(s) 23, 98
Tru9I TTAA 2 cut(s) 23, 98
TscAI CASTG 2 cut(s) 217, 415
TseI GCWGC 2 cut(s) 177, 424
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 217, 415
XceI RCATGY 2 cut(s) 124, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.