Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

7951023 .. 7953223

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22425.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGCTGTCGTCTGCGTCCGCCATATTAAGCCACTCCTCCTCCGCCGCTCAGCTTCTCAGACCTAAGCTCGGGTTTATTGATTTGCTTCCTCGTCGAGCGATGATCGTTTCTTCTCCTTCTTCTTCGCTTCCTCGATTTTTGCGGATGGAATCTCAATCTCAGCTTCGCCAATCTATCTCTTGCTCTGCTTCTTCTTCTTCTTCTATGGCATTAGGTAGAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTGAAGATTAATTTGGATGGTACTGGAGTTGCAGATAGTTCTAGTGGAATTCCTTTCCTTGACCATATGTTAGATCAACTTGCTTCGCATGGCTTGTTTGATGTGCACGTTAGAGCTACTGGTGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACTGCTCTATTAAAGGCTCTTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTCCTCTAGATGAAGCGCTTATACATGTTTCCTTGGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGTCTTCTTTTGGGTTTATCTGTGTTATTCGTTGTTTAGTAATCATTGAAAGTGTTGCCAAAAATTGTTTAACCTTTCGATTTGTAGTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGCTCGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

264

Amino Acids

28.69

Weight (kDa)

6.3

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	104 - 246	6.5e-64	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	560, 746
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	550
AciI	CCGC	4 cut(s)	21, 45, 48, 145
AcsI	RAATTY	1 cut(s)	312
AfaI	GTAC	1 cut(s)	286
AfeI	AGCGCT	1 cut(s)	519
AfiI	CCNNNNNNNGG	3 cut(s)	71, 560, 746
AflIII	ACRYGT	1 cut(s)	526
AgeI	ACCGGT	1 cut(s)	483
AgsI	TTSAA	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	8 cut(s)	7, 55, 70, 166, 380, 428, 503, 785
AluI	AGCT	8 cut(s)	7, 55, 70, 166, 380, 428, 503, 785
Alw21I	GWGCWC	2 cut(s)	372, 733
Alw44I	GTGCAC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	519
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	312
AseI	ATTAAT	1 cut(s)	273
AsiGI	ACCGGT	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	520
AsuHPI	GGTGA	4 cut(s)	398, 476, 503, 761
AvaI	CYCGRG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	372
BaeI	ACNNNNGTAYC	4 cut(s)	276, 309, 597, 630
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	2 cut(s)	372, 733
BccI	CCATC	2 cut(s)	142, 275
BciT130I	CCWGG	1 cut(s)	629
BclI	TGATCA	1 cut(s)	403
BfaI	CTAG	2 cut(s)	306, 509
BfoI	RGCGCY	1 cut(s)	521
BisI	GCNGC	2 cut(s)	48, 783
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	2 cut(s)	49, 784
Bme1390I	CCNGG	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 26, 56
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 560, 746
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	292, 388, 740
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	153, 286, 775
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	71, 560, 746
BseMII	CTCAG	5 cut(s)	65, 73, 176, 599, 623
BseNI	ACTGG	3 cut(s)	292, 388, 740
BseRI	GAGGAG	3 cut(s)	28, 31, 495
BseSI	GKGCMC	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	372, 733
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	484, 779
BslI	CCNNNNNNNGG	3 cut(s)	71, 560, 746
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	372, 733
Bsp143I	GATC	3 cut(s)	105, 337, 403
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	4 cut(s)	21, 45, 48, 145
BspCNI	CTCAG	5 cut(s)	64, 72, 175, 598, 622
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	3 cut(s)	292, 388, 740
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	3 cut(s)	105, 337, 403
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	6 cut(s)	51, 59, 66, 162, 585, 609
BstF5I	GGATG	3 cut(s)	153, 286, 775
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	3 cut(s)	108, 340, 406
BstMBI	GATC	3 cut(s)	105, 337, 403
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	153, 286, 775
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	787
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	483
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	285
CspAI	ACCGGT	1 cut(s)	483
CviAII	CATG	2 cut(s)	353, 527
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	6 cut(s)	51, 59, 66, 162, 585, 609
DpnI	GATC	3 cut(s)	107, 339, 405
DpnII	GATC	3 cut(s)	105, 337, 403
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
EciI	GGCGGA	2 cut(s)	10, 34
Eco130I	CCWWGG	1 cut(s)	534
Eco47III	AGCGCT	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	356, 530
FatI	CATG	2 cut(s)	352, 526
FauNDI	CATATG	2 cut(s)	330, 601
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	48, 783
FokI	GGATG	3 cut(s)	160, 293, 762
Fsp4HI	GCNGC	2 cut(s)	48, 783
FspBI	CTAG	2 cut(s)	306, 509
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	2 cut(s)	48, 783
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	521
HapII	CCGG	2 cut(s)	484, 779
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	2 cut(s)	356, 530
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	2 cut(s)	152, 767
HpaII	CCGG	2 cut(s)	484, 779
HphI	GGTGA	4 cut(s)	398, 476, 503, 761
Hpy166II	GTNNAC	3 cut(s)	370, 394, 551
Hpy188I	TCNGA	2 cut(s)	62, 588
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	3 cut(s)	370, 394, 551
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	2 cut(s)	296, 370
HpyF3I	CTNAG	6 cut(s)	51, 59, 66, 162, 585, 609
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	356, 530
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	105, 337, 403
LmnI	GCTCC	4 cut(s)	4, 508, 630, 728
MaeI	CTAG	2 cut(s)	306, 509
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	241, 491, 563
MalI	GATC	3 cut(s)	107, 339, 405
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	105, 337, 403
MhlI	GDGCHC	2 cut(s)	372, 733
MluCI	AATT	5 cut(s)	222, 274, 312, 632, 697
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	5 cut(s)	49, 52, 102, 144, 516
MseI	TTAA	5 cut(s)	29, 273, 452, 480, 704
MslI	CAYNNNNRTG	2 cut(s)	399, 414
MspI	CCGG	2 cut(s)	484, 779
MspR9I	CCNGG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	629
NdeI	CATATG	2 cut(s)	330, 601
NdeII	GATC	3 cut(s)	105, 337, 403
NlaIII	CATG	2 cut(s)	356, 530
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	530
PciI	ACATGT	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	560, 746
PfoI	TCCNGGA	1 cut(s)	627
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	49, 784
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PscI	ACATGT	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	399, 414
SalI	GTCGAC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	29, 273, 452, 480, 704
SatI	GCNGC	2 cut(s)	48, 783
Sau3AI	GATC	3 cut(s)	105, 337, 403
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	372, 733
SmiMI	CAYNNNNRTG	2 cut(s)	399, 414
Sse9I	AATT	5 cut(s)	222, 274, 312, 632, 697
SsiI	CCGC	4 cut(s)	21, 45, 48, 145
SspMI	CTAG	2 cut(s)	306, 509
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	534
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	4 cut(s)	97, 136, 550, 712
TasI	AATT	5 cut(s)	222, 274, 312, 632, 697
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	5 cut(s)	29, 273, 452, 480, 704
Tru9I	TTAA	5 cut(s)	29, 273, 452, 480, 704
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	432, 528
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	2 cut(s)	560, 746
VneI	GTGCAC	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	312
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	2 cut(s)	306, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.