Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

16631073 .. 16634018

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1192800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGCTTTCACTCTCGGCGCCACCCAGTATTCCAACCTCTTCACCTCCGCCACTAAAACCGCTGTTGAGCTTTTCGGTTTCTCGTCCGAATCTCACACCCACTCCGCCGTCTCACCGCCCATTACTTTCTTCACTAAAATCAAACCAGCTCTTGAAGCTCAAAGCCAAGGACTCTCAGAGAACAGCTCCGCCGCGCGCCTCCCTGGCCGAAAACAACGGCTCCACTATGACCGATTCCCCTATCCCAATTAGCTCAGGGGCTCGCATTGGGGAGGTCAAGAGGGTGACTAAGGAGACCAATGTTTCGGTCAAGATCAACCTGGACGGCACTGGAATCGCTGATTCCAGTACTGGGATTCCGTTTCTTGATCATATGTTGGATCAACTCGCTTCGCATGGGTTGCTGGATGTGCATGTAAAGGCTACCGGTGACATTCACATTGATGATCATCACACAAATGAAGATGTTGCTCTTGCTATAGGAACGGCTTTGCTTCAAGCACTTGGCGATAGAAAAGGAATCTACAGGTTTGGTGACTTCTCTGCGCCACTTGATGAAGCACTCATACATGTCTCACTGGATTTATCTGGACGACCACATCTGAGTTATGATCTCCAAATACCAACAGAGAGGGTCGGCACATATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTCCACATACGGCAGCTTGCTGGAAGAAATTCTCACCATATCATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTCAGACAAGCAACAGAATCTGACCCACGTCGCCTGGGGACCGTGCCAAGTTCAAAAGGCGTCTTGTCACGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

286

Amino Acids

30.72

Weight (kDa)

8.08

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	118 - 261	5.5e-64	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccII	CGCG	3 cut(s)	196, 198, 852
AciI	CCGC	6 cut(s)	50, 62, 107, 118, 191, 194
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	733
AcyI	GRCGYC	2 cut(s)	20, 840
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	354, 682
AflIII	ACRYGT	1 cut(s)	571
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	157, 500, 763, 834
AjiI	CACGTC	1 cut(s)	809
AjnI	CCWGG	3 cut(s)	204, 321, 813
AloI	GAACNNNNNNTCC	2 cut(s)	657, 689
AluBI	AGCT	8 cut(s)	7, 72, 151, 160, 188, 255, 658, 721
AluI	AGCT	8 cut(s)	7, 72, 151, 160, 188, 255, 658, 721
Alw26I	GTCTC	3 cut(s)	117, 290, 580
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	1 cut(s)	733
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AsiGI	ACCGGT	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	733
AspLEI	GCGC	5 cut(s)	22, 198, 200, 550, 854
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	7 cut(s)	36, 107, 298, 443, 548, 697, 731
AvaII	GGWCC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	265, 781
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
BbvI	GCAGC	1 cut(s)	730
BceAI	ACGGC	5 cut(s)	94, 235, 343, 504, 731
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	3 cut(s)	206, 323, 815
BclI	TGATCA	2 cut(s)	370, 448
BcoDI	GTCTC	3 cut(s)	117, 290, 580
BfmI	CTRYAG	2 cut(s)	480, 526
BfoI	RGCGCY	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	194, 719
BlsI	GCNGC	2 cut(s)	195, 720
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	206, 323, 815
Bme18I	GGWCC	1 cut(s)	819
BmgBI	CACGTC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	3 cut(s)	21, 223, 820
BmrFI	CCNGG	3 cut(s)	206, 323, 815
BmrI	ACTGGG	2 cut(s)	21, 363
BmuI	ACTGGG	2 cut(s)	21, 363
BoxI	GACNNNNGTC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu10I	CCTNAGC	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	2 cut(s)	20, 840
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	168, 204, 814
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 682
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	6 cut(s)	27, 337, 348, 358, 585, 676
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	206, 323, 815
BseDI	CCNNGG	3 cut(s)	168, 204, 814
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	354, 682
BseMII	CTCAG	5 cut(s)	191, 270, 596, 668, 796
BseNI	ACTGG	6 cut(s)	27, 337, 348, 358, 585, 676
BsePI	GCGCGC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	730
Bsh1236I	CGCG	3 cut(s)	196, 198, 852
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	2 cut(s)	354, 682
BsmAI	GTCTC	3 cut(s)	117, 290, 580
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	265, 781
Bsp143I	GATC	5 cut(s)	315, 370, 382, 448, 613
BspACI	CCGC	6 cut(s)	50, 62, 107, 118, 191, 194
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	5 cut(s)	190, 269, 597, 667, 795
BspFNI	CGCG	3 cut(s)	196, 198, 852
BspLI	GGNNCC	3 cut(s)	21, 223, 820
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	6 cut(s)	27, 337, 348, 358, 585, 676
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	168, 204, 814
BssHII	GCGCGC	1 cut(s)	196
BssMI	GATC	5 cut(s)	315, 370, 382, 448, 613
BssNI	GRCGYC	2 cut(s)	20, 840
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	206, 323, 815
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	2 cut(s)	20, 840
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	198, 265, 723
BstDEI	CTNAG	6 cut(s)	177, 256, 291, 605, 654, 782
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	3 cut(s)	196, 198, 852
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	5 cut(s)	22, 198, 200, 550, 854
BstKTI	GATC	5 cut(s)	318, 373, 385, 451, 616
BstMAI	GTCTC	3 cut(s)	117, 290, 580
BstMBI	GATC	5 cut(s)	315, 370, 382, 448, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 206, 403, 412
BstNI	CCWGG	3 cut(s)	206, 323, 815
BstNSI	RCATGY	2 cut(s)	419, 575
BstPAI	GACNNNNGTC	1 cut(s)	807
BstSCI	CCNGG	3 cut(s)	204, 321, 813
BstSFI	CTRYAG	2 cut(s)	480, 526
BstUI	CGCG	3 cut(s)	196, 198, 852
BstV1I	GCAGC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	809
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	330, 578
Cac8I	GCNNGC	3 cut(s)	198, 265, 723
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	5 cut(s)	22, 198, 200, 550, 854
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	819
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	351
CspAI	ACCGGT	1 cut(s)	428
CviAII	CATG	3 cut(s)	398, 416, 572
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	6 cut(s)	177, 256, 291, 605, 654, 782
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	5 cut(s)	317, 372, 384, 450, 615
DpnII	GATC	5 cut(s)	315, 370, 382, 448, 613
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	3 cut(s)	39, 96, 180
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	265, 781
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	819
EcoRII	CCWGG	3 cut(s)	204, 321, 813
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	265, 781
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	401, 419, 575
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	3 cut(s)	397, 415, 571
FauNDI	CATATG	2 cut(s)	375, 646
FbaI	TGATCA	2 cut(s)	370, 448
Fnu4HI	GCNGC	2 cut(s)	194, 719
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	265, 781
Fsp4HI	GCNGC	2 cut(s)	194, 719
GlaI	GCGC	5 cut(s)	21, 197, 199, 549, 853
GluI	GCNGC	2 cut(s)	194, 719
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	5 cut(s)	22, 198, 200, 550, 854
Hin1I	GRCGYC	2 cut(s)	20, 840
Hin1II	CATG	3 cut(s)	401, 419, 575
Hin6I	GCGC	5 cut(s)	20, 196, 198, 548, 852
HinP1I	GCGC	5 cut(s)	20, 196, 198, 548, 852
HinfI	GANTC	8 cut(s)	91, 173, 236, 336, 344, 358, 522, 797
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	7 cut(s)	36, 107, 298, 443, 548, 697, 731
Hpy188I	TCNGA	5 cut(s)	90, 180, 606, 785, 802
Hpy188III	TCNNGA	5 cut(s)	154, 280, 313, 368, 591
Hpy99I	CGWCG	1 cut(s)	813
HpyAV	CCTTC	1 cut(s)	769
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	2 cut(s)	415, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 206, 403, 412
HpyF3I	CTNAG	6 cut(s)	177, 256, 291, 605, 654, 782
HpySE526I	ACGT	1 cut(s)	808
Hsp92I	GRCGYC	2 cut(s)	20, 840
Hsp92II	CATG	3 cut(s)	401, 419, 575
HspAI	GCGC	5 cut(s)	20, 196, 198, 548, 852
KasI	GGCGCC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	370, 448
Kzo9I	GATC	5 cut(s)	315, 370, 382, 448, 613
LmnI	GCTCC	3 cut(s)	4, 193, 227
Lsp1109I	GCAGC	1 cut(s)	730
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	4 cut(s)	286, 431, 536, 846
MalI	GATC	5 cut(s)	317, 372, 384, 450, 615
MboI	GATC	5 cut(s)	315, 370, 382, 448, 613
MboII	GAAGA	4 cut(s)	33, 123, 476, 741
MhlI	GDGCHC	2 cut(s)	265, 781
MluCI	AATT	2 cut(s)	249, 733
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	59, 360
MnlI	CCTC	7 cut(s)	49, 57, 211, 268, 276, 627, 745
MroXI	GAANNNNTTC	1 cut(s)	733
MslI	CAYNNNNRTG	2 cut(s)	444, 459
MspA1I	CMGCKG	2 cut(s)	64, 658
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	3 cut(s)	206, 323, 815
MvaI	CCWGG	3 cut(s)	206, 323, 815
MvnI	CGCG	3 cut(s)	196, 198, 852
MwoI	GCNNNNNNNGC	4 cut(s)	157, 206, 403, 412
NarI	GGCGCC	1 cut(s)	20
NdeI	CATATG	2 cut(s)	375, 646
NdeII	GATC	5 cut(s)	315, 370, 382, 448, 613
NlaIII	CATG	3 cut(s)	401, 419, 575
NlaIV	GGNNCC	3 cut(s)	21, 223, 820
NmuCI	GTSAC	4 cut(s)	286, 431, 536, 846
NspI	RCATGY	2 cut(s)	419, 575
PauI	GCGCGC	1 cut(s)	196
PciI	ACATGT	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	7 cut(s)	91, 236, 336, 344, 358, 522, 797
PflMI	CCANNNNNTGG	1 cut(s)	682
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	195, 720
PleI	GAGTC	1 cut(s)	167
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	807
Psp6I	CCWGG	3 cut(s)	204, 321, 813
PspGI	CCWGG	3 cut(s)	204, 321, 813
PspN4I	GGNNCC	3 cut(s)	21, 223, 820
PspPI	GGNCC	1 cut(s)	819
PstNI	CAGNNNCTG	1 cut(s)	800
PteI	GCGCGC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	444, 459
SatI	GCNGC	2 cut(s)	194, 719
Sau3AI	GATC	5 cut(s)	315, 370, 382, 448, 613
Sau96I	GGNCC	1 cut(s)	819
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	206, 323, 815
SduI	GDGCHC	2 cut(s)	265, 781
SfcI	CTRYAG	2 cut(s)	480, 526
SfoI	GGCGCC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	819
SmiMI	CAYNNNNRTG	2 cut(s)	444, 459
Sse9I	AATT	2 cut(s)	249, 733
SsiI	CCGC	6 cut(s)	50, 62, 107, 118, 191, 194
SspDI	GGCGCC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	204, 321, 813
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	811
TaqII	GACCGA	2 cut(s)	248, 298
TasI	AATT	2 cut(s)	249, 733
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	7 cut(s)	91, 236, 336, 344, 358, 522, 797
TscAI	CASTG	2 cut(s)	337, 585
TseFI	GTSAC	4 cut(s)	286, 431, 536, 846
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	4 cut(s)	286, 431, 536, 846
TspDTI	ATGAA	2 cut(s)	477, 573
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	337, 585
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	2 cut(s)	419, 575
XmnI	GAANNNNTTC	1 cut(s)	733
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.