RchiOBHm_Chr4g0416251

Belongs to the imidazoleglycerol-phosphate dehydratase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007204
Physical Location & Seq
Reverse (-)
41114525 .. 41117350
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38641

Sequence Viewer

Length: 822 bp
ATGGAGGTATCCGCACCACCCGGTGTTCTAACCTCACCGTCCTCATTCTCATCTCCGCCGCTCAAACCCAGACTCCTCACCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACCTGATGCTCCAACACATGGACTCTCACTCTCACAGAGCCACCACTCCCTCTGCCTCAAACAATGGCCCCGCTCTCATAATTTCCCCTACTGACTCCGGGAAGAGAATTGGGGAGGTTAAGAGGGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACCGGAATTGCTGATTCCAATACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCGCACGGGTTGTTGGACGTGCATGTGAGGGCAGCTGGTGACACCCACATTGATGATCATCACACAAATGAAGACGTCGCTCTTGCTATTGGAACGGCTCTGCTTCAAGCACTGGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCTCTGGATTTATCTGGCCGACCACATTTGGGTTATGATCTACAGATACCCACCGAGAGAGTTGGTACCTATGACACCCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAAGGTGTCCTGTCACGTTCTTGA

Protein Analysis

273

Amino Acids

29.88

Weight (kDa)

7.05

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IGPD PF00475 106 - 249 3.8e-63 Imidazoleglycerol-phosphate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 605
AccB1I GGYRCC 2 cut(s) 293, 605
AccB7I CCANNNNNTGG 3 cut(s) 142, 625, 646
AccBSI CCGCTC 2 cut(s) 61, 197
AciI CCGC 4 cut(s) 12, 56, 59, 195
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 2 cut(s) 23, 473
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 6 cut(s) 93, 142, 318, 569, 625, 646
AgsI TTSAA 2 cut(s) 464, 727
AjiI CACGTC 2 cut(s) 376, 773
AloI GAACNNNNNNTCC 2 cut(s) 621, 653
AluBI AGCT 4 cut(s) 392, 622, 685, 795
AluI AGCT 4 cut(s) 392, 622, 685, 795
Alw26I GTCTC 4 cut(s) 245, 254, 274, 544
AlwI GGATC 1 cut(s) 354
AoxI GGCC 2 cut(s) 190, 556
ApeKI GCWGC 2 cut(s) 389, 682
Asp718I GGTACC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 3 cut(s) 21, 94, 223
AsuHPI GGTGA 7 cut(s) 27, 70, 407, 485, 512, 661, 695
BaeGI GKGCMC 1 cut(s) 103
BanI GGYRCC 2 cut(s) 293, 605
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 401, 694
BceAI ACGGC 2 cut(s) 307, 468
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 2 cut(s) 334, 412
BcnI CCSGG 3 cut(s) 21, 94, 223
BcoDI GTCTC 4 cut(s) 245, 254, 274, 544
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 1 cut(s) 581
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 3 cut(s) 59, 390, 683
BlsI GCNGC 3 cut(s) 60, 391, 684
Bme1390I CCNGG 3 cut(s) 21, 94, 223
BmgBI CACGTC 2 cut(s) 376, 773
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 193, 295, 607
BmrFI CCNGG 3 cut(s) 21, 94, 223
BmrI ACTGGG 2 cut(s) 327, 479
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 2 cut(s) 327, 479
BoxI GACNNNNGTC 2 cut(s) 266, 771
BpiI GAAGAC 1 cut(s) 435
BpuMI CCSGG 3 cut(s) 21, 94, 223
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 2 cut(s) 245, 254
BsaJI CCNNGG 2 cut(s) 255, 778
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 142, 318, 569, 625, 646
Bse1I ACTGG 3 cut(s) 322, 474, 640
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 255, 778
BseGI GGATG 1 cut(s) 675
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 6 cut(s) 93, 142, 318, 569, 625, 646
BseNI ACTGG 3 cut(s) 322, 474, 640
BseRI GAGGAG 2 cut(s) 65, 504
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 2 cut(s) 401, 694
BseYI CCCAGC 1 cut(s) 618
BshFI GGCC 2 cut(s) 192, 558
BshNI GGYRCC 2 cut(s) 293, 605
BsiSI CCGG 5 cut(s) 21, 94, 222, 297, 679
BslI CCNNNNNNNGG 6 cut(s) 93, 142, 318, 569, 625, 646
BsmAI GTCTC 4 cut(s) 245, 254, 274, 544
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 2 cut(s) 192, 558
Bso31I GGTCTC 2 cut(s) 245, 254
Bsp1286I GDGCHC 2 cut(s) 103, 745
Bsp143I GATC 4 cut(s) 334, 346, 412, 577
BspACI CCGC 4 cut(s) 12, 56, 59, 195
BspANI GGCC 2 cut(s) 192, 558
BspLI GGNNCC 3 cut(s) 193, 295, 607
BspPI GGATC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 750
BspT107I GGYRCC 2 cut(s) 293, 605
BspTNI GGTCTC 2 cut(s) 245, 254
BsrBI CCGCTC 2 cut(s) 61, 197
BsrI ACTGG 3 cut(s) 322, 474, 640
BssECI CCNNGG 2 cut(s) 255, 778
BssMI GATC 4 cut(s) 334, 346, 412, 577
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 2 cut(s) 255, 778
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 221, 750
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 687
BstF5I GGATG 1 cut(s) 675
BstKTI GATC 4 cut(s) 337, 349, 415, 580
BstMAI GTCTC 4 cut(s) 245, 254, 274, 544
BstMBI GATC 4 cut(s) 334, 346, 412, 577
BstMWI GCNNNNNNNGC 2 cut(s) 783, 792
BstNSI RCATGY 1 cut(s) 383
BstPAI GACNNNNGTC 2 cut(s) 266, 771
BstSCI CCNGG 3 cut(s) 19, 92, 221
BstSFI CTRYAG 1 cut(s) 581
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 401, 694
BstV2I GAAGAC 1 cut(s) 435
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 192, 558
BtrI CACGTC 2 cut(s) 376, 773
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 606
CviAII CATG 4 cut(s) 142, 380, 528, 536
CviJI RGCY 9 cut(s) 164, 192, 392, 455, 558, 622, 685, 743, 795
CviKI_1 RGCY 9 cut(s) 164, 192, 392, 455, 558, 622, 685, 743, 795
CviQI GTAC 1 cut(s) 606
DpnI GATC 4 cut(s) 336, 348, 414, 579
DpnII GATC 4 cut(s) 334, 346, 412, 577
DraIII CACNNNGTG 2 cut(s) 23, 473
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 221, 750
EarI CTCTTC 2 cut(s) 221, 750
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 255, 778
Eco24I GRGCYC 1 cut(s) 745
Eco31I GGTCTC 2 cut(s) 245, 254
EcoT14I CCWWGG 2 cut(s) 255, 778
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 255, 778
FaeI CATG 4 cut(s) 145, 383, 531, 539
FatI CATG 4 cut(s) 141, 379, 527, 535
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 339
FbaI TGATCA 2 cut(s) 334, 412
Fnu4HI GCNGC 3 cut(s) 59, 390, 683
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 3 cut(s) 59, 390, 683
FspBI CTAG 1 cut(s) 758
GluI GCNGC 3 cut(s) 59, 390, 683
GsaI CCCAGC 1 cut(s) 622
HaeIII GGCC 2 cut(s) 192, 558
HapII CCGG 5 cut(s) 21, 94, 222, 297, 679
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 145, 383, 531, 539
HinfI GANTC 7 cut(s) 72, 146, 218, 308, 322, 486, 532
HpaII CCGG 5 cut(s) 21, 94, 222, 297, 679
HphI GGTGA 7 cut(s) 27, 70, 407, 485, 512, 661, 695
Hpy188III TCNNGA 3 cut(s) 518, 545, 819
Hpy99I CGWCG 2 cut(s) 437, 777
HpyAV CCTTC 4 cut(s) 91, 337, 687, 733
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 4 cut(s) 375, 432, 772, 814
HpyCH4V TGCA 2 cut(s) 379, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 783, 792
HpySE526I ACGT 4 cut(s) 375, 432, 772, 814
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 145, 383, 531, 539
KpnI GGTACC 1 cut(s) 609
Ksp22I TGATCA 2 cut(s) 334, 412
Kzo9I GATC 4 cut(s) 334, 346, 412, 577
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 3 cut(s) 138, 517, 783
Lsp1109I GCAGC 2 cut(s) 401, 694
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 758
MaeII ACGT 4 cut(s) 375, 432, 772, 814
MaeIII GTNAC 3 cut(s) 395, 500, 810
MalI GATC 4 cut(s) 336, 348, 414, 579
MbiI CCGCTC 2 cut(s) 61, 197
MboI GATC 4 cut(s) 334, 346, 412, 577
MboII GAAGA 3 cut(s) 238, 440, 737
MhlI GDGCHC 2 cut(s) 103, 745
MluCI AATT 4 cut(s) 88, 204, 231, 300
MlyI GAGTC 3 cut(s) 66, 140, 212
MmeI TCCRAC 3 cut(s) 160, 324, 351
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 408, 423
MspA1I CMGCKG 2 cut(s) 392, 622
MspI CCGG 5 cut(s) 21, 94, 222, 297, 679
MspR9I CCNGG 3 cut(s) 21, 94, 223
Mva1269I GAATGC 1 cut(s) 786
MwoI GCNNNNNNNGC 2 cut(s) 783, 792
NciI CCSGG 3 cut(s) 21, 94, 223
NdeI CATATG 1 cut(s) 339
NdeII GATC 4 cut(s) 334, 346, 412, 577
NlaIII CATG 4 cut(s) 145, 383, 531, 539
NlaIV GGNNCC 3 cut(s) 193, 295, 607
NmuCI GTSAC 3 cut(s) 395, 500, 810
NspI RCATGY 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 1 cut(s) 786
PfeI GAWTC 4 cut(s) 308, 322, 486, 532
PflMI CCANNNNNTGG 3 cut(s) 142, 625, 646
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 3 cut(s) 60, 391, 684
PleI GAGTC 3 cut(s) 66, 140, 212
PpsI GAGTC 3 cut(s) 66, 140, 212
PshAI GACNNNNGTC 2 cut(s) 266, 771
PspFI CCCAGC 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 193, 295, 607
PspPI GGNCC 1 cut(s) 191
PvuII CAGCTG 2 cut(s) 392, 622
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 2 cut(s) 408, 423
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 59, 390, 683
Sau3AI GATC 4 cut(s) 334, 346, 412, 577
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 3 cut(s) 66, 140, 212
ScrFI CCNGG 3 cut(s) 21, 94, 223
SduI GDGCHC 2 cut(s) 103, 745
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 581
SmiMI CAYNNNNRTG 2 cut(s) 408, 423
Sse9I AATT 4 cut(s) 88, 204, 231, 300
SsiI CCGC 4 cut(s) 12, 56, 59, 195
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 3 cut(s) 19, 92, 221
StyI CCWWGG 2 cut(s) 255, 778
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 4 cut(s) 378, 435, 775, 817
TaqI TCGA 2 cut(s) 748, 797
TasI AATT 4 cut(s) 88, 204, 231, 300
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 4 cut(s) 308, 322, 486, 532
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 3 cut(s) 395, 500, 810
TseI GCWGC 2 cut(s) 389, 682
Tsp45I GTSAC 3 cut(s) 395, 500, 810
TspDTI ATGAA 3 cut(s) 441, 524, 537
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 474
Van91I CCANNNNNTGG 3 cut(s) 142, 625, 646
XceI RCATGY 1 cut(s) 383
XspI CTAG 1 cut(s) 758
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.