Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

1013348 .. 1016455

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGCTATCAGCAGCAGCGCCACCCGGTATTCTTAACTGTTCATCTCCTCCACTAAAACCGAGGGTTAGCTTCGCGGTTTCTCGTACAGATCTCACACCCACCCTTCCTTCTCTACGCGCATCATCTTCTTCACTGAACCCAAGCCGCCACTTGAAGCTCAAACACATGGACTCTCAGAGAAGCCTCTCACCGCGTGCCTCTCTGGCCGAAAACAATGGCTCTACTCTGACCGATTCCCCGACCCCAAGTAACTCAGGGGTTCGAATTGGGGAGGTCAAGAGGGTGACCAAGGAGACCAATGTCTCGGTCAAAATAAACCTGGACGGCACTGGAGTTGCTGATTCTAGTACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCACATGGGTTGTTGGACGTGCATGTAAGGGCTATTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTTGCTCTTGCTATCGGAACGGCTTTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCACTGATACATGTCTCACTGGATTTATCTGGCCGACCATATTTGGGTTATGATCTGCAGATACCCACCGAGAGGGTTGGGACATATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTCCACATCCGGCAGCTTGCTGGAAGAAATTCTCACCATATTATTGAGGCAACTTTCAAGGCATTTGCTAGGGCTCTCCGACAAGCCACAGAACATGACCGACGTCGCCTTGGGACTGTGCCAAGTTCAAAAGGTGTCCTGTCACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

286

Amino Acids

30.81

Weight (kDa)

8.02

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	811
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccII	CGCG	3 cut(s)	77, 120, 196
AciI	CCGC	3 cut(s)	77, 148, 194
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	207, 592
AcsI	RAATTY	1 cut(s)	733
AcyI	GRCGYC	1 cut(s)	808
AdeI	CACNNNGTG	2 cut(s)	197, 509
AfaI	GTAC	2 cut(s)	88, 352
AfiI	CCNNNNNNNGG	3 cut(s)	605, 633, 682
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	4 cut(s)	157, 500, 763, 834
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	321
AloI	GAACNNNNNNTCC	2 cut(s)	657, 689
AluBI	AGCT	5 cut(s)	7, 72, 160, 658, 721
AluI	AGCT	5 cut(s)	7, 72, 160, 658, 721
Alw26I	GTCTC	3 cut(s)	290, 310, 580
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	207, 592
ApeKI	GCWGC	3 cut(s)	14, 17, 718
ApoI	RAATTY	1 cut(s)	733
Asp700I	GAANNNNTTC	1 cut(s)	733
AspLEI	GCGC	2 cut(s)	22, 122
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	7 cut(s)	183, 298, 443, 521, 548, 697, 731
AsuII	TTCGAA	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	781
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
BbvI	GCAGC	3 cut(s)	26, 29, 730
BceAI	ACGGC	2 cut(s)	343, 504
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	2 cut(s)	370, 448
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	3 cut(s)	290, 310, 580
BfaI	CTAG	2 cut(s)	348, 774
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	4 cut(s)	15, 18, 148, 719
BlsI	GCNGC	4 cut(s)	16, 19, 149, 720
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	27, 323
BmgBI	CACGTC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	27, 323
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	363
BoxI	GACNNNNGTC	2 cut(s)	302, 807
BpmI	CTGGAG	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	62, 291, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 633, 682
Bse1I	ACTGG	4 cut(s)	337, 358, 585, 676
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	62, 291, 814
BseGI	GGATG	2 cut(s)	435, 711
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	605, 633, 682
BseMII	CTCAG	3 cut(s)	191, 270, 668
BseNI	ACTGG	4 cut(s)	337, 358, 585, 676
BseRI	GAGGAG	2 cut(s)	39, 540
BseXI	GCAGC	3 cut(s)	26, 29, 730
Bsh1236I	CGCG	3 cut(s)	77, 120, 196
BshFI	GGCC	2 cut(s)	209, 594
BsiSI	CCGG	2 cut(s)	27, 715
BslFI	GGGAC	2 cut(s)	655, 832
BslI	CCNNNNNNNGG	3 cut(s)	605, 633, 682
BsmAI	GTCTC	3 cut(s)	290, 310, 580
BsmFI	GGGAC	2 cut(s)	655, 832
BsnI	GGCC	2 cut(s)	209, 594
Bso31I	GGTCTC	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	91, 370, 382, 448, 613
BspACI	CCGC	3 cut(s)	77, 148, 194
BspANI	GGCC	2 cut(s)	209, 594
BspCNI	CTCAG	3 cut(s)	190, 269, 667
BspFNI	CGCG	3 cut(s)	77, 120, 196
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	337, 358, 585, 676
BssECI	CCNNGG	3 cut(s)	62, 291, 814
BssMI	GATC	5 cut(s)	91, 370, 382, 448, 613
BssNI	GRCGYC	1 cut(s)	808
BssT1I	CCWWGG	2 cut(s)	291, 814
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	41, 823
BstACI	GRCGYC	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	198, 723
BstDEI	CTNAG	3 cut(s)	177, 256, 654
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	435, 711
BstFNI	CGCG	3 cut(s)	77, 120, 196
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 122
BstKTI	GATC	5 cut(s)	94, 373, 385, 451, 616
BstMAI	GTCTC	3 cut(s)	290, 310, 580
BstMBI	GATC	5 cut(s)	91, 370, 382, 448, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	2 cut(s)	419, 575
BstPAI	GACNNNNGTC	2 cut(s)	302, 807
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	25, 321
BstSFI	CTRYAG	1 cut(s)	617
BstUI	CGCG	3 cut(s)	77, 120, 196
BstV1I	GCAGC	3 cut(s)	26, 29, 730
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	209, 594
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	435, 711
BtsIMutI	CAGTG	4 cut(s)	134, 330, 563, 578
Cac8I	GCNNGC	2 cut(s)	198, 723
CfoI	GCGC	2 cut(s)	22, 122
Csp6I	GTAC	2 cut(s)	87, 351
CviAII	CATG	5 cut(s)	169, 398, 416, 572, 800
CviQI	GTAC	2 cut(s)	87, 351
DdeI	CTNAG	3 cut(s)	177, 256, 654
DpnI	GATC	5 cut(s)	93, 372, 384, 450, 615
DpnII	GATC	5 cut(s)	91, 370, 382, 448, 613
DraIII	CACNNNGTG	2 cut(s)	197, 509
EaeI	YGGCCR	2 cut(s)	207, 592
Eco130I	CCWWGG	2 cut(s)	291, 814
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	291, 814
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	2 cut(s)	291, 814
FaeI	CATG	5 cut(s)	172, 401, 419, 575, 803
FaqI	GGGAC	2 cut(s)	655, 832
FatI	CATG	5 cut(s)	168, 397, 415, 571, 799
FauNDI	CATATG	2 cut(s)	375, 646
FbaI	TGATCA	2 cut(s)	370, 448
Fnu4HI	GCNGC	4 cut(s)	15, 18, 148, 719
FokI	GGATG	2 cut(s)	422, 698
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	4 cut(s)	15, 18, 148, 719
FspBI	CTAG	2 cut(s)	348, 774
GlaI	GCGC	2 cut(s)	21, 121
GluI	GCNGC	4 cut(s)	15, 18, 148, 719
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	209, 594
HapII	CCGG	2 cut(s)	27, 715
HhaI	GCGC	2 cut(s)	22, 122
Hin1I	GRCGYC	1 cut(s)	808
Hin1II	CATG	5 cut(s)	172, 401, 419, 575, 803
Hin6I	GCGC	2 cut(s)	20, 120
HinP1I	GCGC	2 cut(s)	20, 120
HinfI	GANTC	5 cut(s)	173, 236, 344, 358, 522
HpaII	CCGG	2 cut(s)	27, 715
HphI	GGTGA	7 cut(s)	183, 298, 443, 521, 548, 697, 731
Hpy188I	TCNGA	4 cut(s)	180, 231, 485, 785
Hpy188III	TCNNGA	3 cut(s)	280, 554, 855
Hpy99I	CGWCG	2 cut(s)	810, 813
HpyAV	CCTTC	3 cut(s)	116, 120, 373
HpyCH4III	ACNGT	2 cut(s)	41, 823
HpyCH4IV	ACGT	3 cut(s)	411, 808, 850
HpyCH4V	TGCA	2 cut(s)	415, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	177, 256, 654
HpySE526I	ACGT	3 cut(s)	411, 808, 850
Hsp92I	GRCGYC	1 cut(s)	808
Hsp92II	CATG	5 cut(s)	172, 401, 419, 575, 803
HspAI	GCGC	2 cut(s)	20, 120
Ksp22I	TGATCA	2 cut(s)	370, 448
Kzo9I	GATC	5 cut(s)	91, 370, 382, 448, 613
LmnI	GCTCC	2 cut(s)	4, 553
Lsp1109I	GCAGC	3 cut(s)	26, 29, 730
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	348, 774
MaeII	ACGT	3 cut(s)	411, 808, 850
MaeIII	GTNAC	5 cut(s)	251, 286, 431, 536, 846
MalI	GATC	5 cut(s)	93, 372, 384, 450, 615
MboI	GATC	5 cut(s)	91, 370, 382, 448, 613
MboII	GAAGA	4 cut(s)	120, 123, 476, 741
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	2 cut(s)	267, 733
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	3 cut(s)	360, 387, 808
MnlI	CCTC	9 cut(s)	57, 60, 197, 211, 268, 276, 561, 627, 745
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	444, 459
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	2 cut(s)	27, 715
MspR9I	CCNGG	2 cut(s)	27, 323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	3 cut(s)	77, 120, 196
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	27
NdeI	CATATG	2 cut(s)	375, 646
NdeII	GATC	5 cut(s)	91, 370, 382, 448, 613
NlaIII	CATG	5 cut(s)	172, 401, 419, 575, 803
NmuCI	GTSAC	4 cut(s)	286, 431, 536, 846
NspI	RCATGY	2 cut(s)	419, 575
NspV	TTCGAA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	4 cut(s)	236, 344, 358, 522
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	16, 19, 149, 720
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	571
PshAI	GACNNNNGTC	2 cut(s)	302, 807
Psp6I	CCWGG	1 cut(s)	321
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	88, 352
RsaNI	GTAC	2 cut(s)	87, 351
RseI	CAYNNNNRTG	2 cut(s)	444, 459
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	4 cut(s)	15, 18, 148, 719
Sau3AI	GATC	5 cut(s)	91, 370, 382, 448, 613
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	27, 323
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	617
SfuI	TTCGAA	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	444, 459
Sse9I	AATT	2 cut(s)	267, 733
SsiI	CCGC	3 cut(s)	77, 148, 194
SspMI	CTAG	2 cut(s)	348, 774
StyD4I	CCNGG	2 cut(s)	25, 321
StyI	CCWWGG	2 cut(s)	291, 814
TaaI	ACNGT	2 cut(s)	41, 823
TaiI	ACGT	3 cut(s)	414, 811, 853
TaqI	TCGA	1 cut(s)	265
TaqII	GACCGA	3 cut(s)	248, 298, 819
TasI	AATT	2 cut(s)	267, 733
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	4 cut(s)	236, 344, 358, 522
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	4 cut(s)	141, 337, 570, 585
TseFI	GTSAC	4 cut(s)	286, 431, 536, 846
TseI	GCWGC	3 cut(s)	14, 17, 718
Tsp45I	GTSAC	4 cut(s)	286, 431, 536, 846
TspDTI	ATGAA	3 cut(s)	33, 477, 573
TspRI	CASTG	4 cut(s)	141, 337, 570, 585
Van91I	CCANNNNNTGG	1 cut(s)	682
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	2 cut(s)	419, 575
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	2 cut(s)	348, 774
ZraI	GACGTC	1 cut(s)	809
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.