Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

12333905 .. 12336323

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGCTATCACTCTCGGCGCCACCCATTCCAACCCCTTCACCTCCGCTACTAAAACCGCTGGTGAGCTTCTCGGTTTCTCGTCCGAATCTCACACCCACTCCGCCGTCTCACCGCCCATTACTTTCTTCACAAAAATCAAACCAGCTTTTGAAGCTCAAAGCCACGGACTCTCAGAGAACAGCTCCGCCGCGCGCCTCCCTGGCCGAAAACAACGGCTCCACTATGATCGATTCCCCTAACCCAATTAGCTCAGGGGCTCGAATTGGGGAGGTCAAGAGGGTGACTAAGGAGACCAATGTTTCGGTCAAGATCAAACTGGACGGCACTGGAATCGCTGATTCCAGTACTGGGATTCCGTTTCTTGATCATATGTTGGATCAACTCGCTTCGCATGGGTTGCTGGATGTGCATGTAAAGGCTACTGGTGACATTCACATTGATGATCATCACACAAATGAAGATGTTGCTCTTGCTATAGGAACGGCTTTGCTTCAAGCACTTGGCGATAGAAAAGGAATCTACAGGTTTGGTGACTTCTCTGCGCCACTTGATGAAGCACTCATACATGTCTCACTGGATTTATCTGGACGACCACATCTGAGTTATGATCTCCAAATACCAACAGAGAGGGTCGGCACATATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTCCACATCCGGCAGCTTGCTGGAAGAAATTCTCACCATATCGTTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTCAGACAAGCAACAGAATCTGACCCACGTCGCCTGGGGACCGTGCCAAGTTCGAAAGGCGTCTTGTCGCGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

285

Amino Acids

30.65

Weight (kDa)

8.08

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	117 - 260	6.8e-64	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccII	CGCG	4 cut(s)	193, 195, 847, 849
AciI	CCGC	6 cut(s)	47, 59, 104, 115, 188, 191
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	730
AcyI	GRCGYC	2 cut(s)	20, 837
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	351, 679
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	154, 497, 760
AjiI	CACGTC	1 cut(s)	806
AjnI	CCWGG	2 cut(s)	201, 810
AloI	GAACNNNNNNTCC	2 cut(s)	654, 686
AluBI	AGCT	8 cut(s)	7, 69, 148, 157, 185, 252, 655, 718
AluI	AGCT	8 cut(s)	7, 69, 148, 157, 185, 252, 655, 718
Alw26I	GTCTC	3 cut(s)	114, 287, 577
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	715
ApoI	RAATTY	1 cut(s)	730
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
Asp700I	GAANNNNTTC	1 cut(s)	730
AspLEI	GCGC	6 cut(s)	22, 195, 197, 547, 849, 851
AspS9I	GGNCC	1 cut(s)	816
AsuHPI	GGTGA	8 cut(s)	33, 76, 104, 295, 440, 545, 694, 728
AsuII	TTCGAA	1 cut(s)	830
AvaII	GGWCC	1 cut(s)	816
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	262, 778
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbvI	GCAGC	1 cut(s)	727
BceAI	ACGGC	4 cut(s)	91, 232, 340, 501
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	203, 812
BclI	TGATCA	2 cut(s)	367, 445
BcoDI	GTCTC	3 cut(s)	114, 287, 577
BfmI	CTRYAG	2 cut(s)	477, 523
BfoI	RGCGCY	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	191, 716
BlsI	GCNGC	2 cut(s)	192, 717
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	203, 812
Bme18I	GGWCC	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	3 cut(s)	21, 220, 817
BmrFI	CCNGG	2 cut(s)	203, 812
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BoxI	GACNNNNGTC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	830
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	2 cut(s)	20, 837
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	165, 201, 811
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 679
Bse1I	ACTGG	7 cut(s)	324, 334, 345, 355, 430, 582, 673
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	203, 812
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	165, 201, 811
BseGI	GGATG	2 cut(s)	412, 708
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	351, 679
BseMII	CTCAG	5 cut(s)	188, 267, 593, 665, 793
BseNI	ACTGG	7 cut(s)	324, 334, 345, 355, 430, 582, 673
BsePI	GCGCGC	2 cut(s)	193, 847
BseXI	GCAGC	1 cut(s)	727
Bsh1236I	CGCG	4 cut(s)	193, 195, 847, 849
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	712
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	2 cut(s)	351, 679
BsmAI	GTCTC	3 cut(s)	114, 287, 577
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	829
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	262, 778
Bsp143I	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
BspACI	CCGC	6 cut(s)	47, 59, 104, 115, 188, 191
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	5 cut(s)	187, 266, 594, 664, 792
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	4 cut(s)	193, 195, 847, 849
BspLI	GGNNCC	3 cut(s)	21, 220, 817
BspPI	GGATC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	7 cut(s)	324, 334, 345, 355, 430, 582, 673
BssECI	CCNNGG	3 cut(s)	165, 201, 811
BssHII	GCGCGC	2 cut(s)	193, 847
BssMI	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
BssNI	GRCGYC	2 cut(s)	20, 837
Bst2UI	CCWGG	2 cut(s)	203, 812
Bst4CI	ACNGT	1 cut(s)	820
BstACI	GRCGYC	2 cut(s)	20, 837
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	3 cut(s)	195, 720, 849
BstDEI	CTNAG	6 cut(s)	174, 253, 288, 602, 651, 779
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	412, 708
BstFNI	CGCG	4 cut(s)	193, 195, 847, 849
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	6 cut(s)	22, 195, 197, 547, 849, 851
BstKTI	GATC	6 cut(s)	231, 315, 370, 382, 448, 613
BstMAI	GTCTC	3 cut(s)	114, 287, 577
BstMBI	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 203, 400, 409
BstNI	CCWGG	2 cut(s)	203, 812
BstNSI	RCATGY	2 cut(s)	416, 572
BstPAI	GACNNNNGTC	1 cut(s)	804
BstSCI	CCNGG	2 cut(s)	201, 810
BstSFI	CTRYAG	2 cut(s)	477, 523
BstUI	CGCG	4 cut(s)	193, 195, 847, 849
BstV1I	GCAGC	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	2 cut(s)	412, 708
BtsIMutI	CAGTG	2 cut(s)	327, 575
Cac8I	GCNNGC	3 cut(s)	195, 720, 849
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	6 cut(s)	22, 195, 197, 547, 849, 851
Cfr13I	GGNCC	1 cut(s)	816
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	826
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	395, 413, 569
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	6 cut(s)	174, 253, 288, 602, 651, 779
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	6 cut(s)	230, 314, 369, 381, 447, 612
DpnII	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
EaeI	YGGCCR	1 cut(s)	204
EciI	GGCGGA	2 cut(s)	93, 177
Eco24I	GRGCYC	2 cut(s)	262, 778
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	201, 810
EcoT38I	GRGCYC	2 cut(s)	262, 778
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	3 cut(s)	398, 416, 572
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	3 cut(s)	394, 412, 568
FauNDI	CATATG	2 cut(s)	372, 643
FbaI	TGATCA	2 cut(s)	367, 445
Fnu4HI	GCNGC	2 cut(s)	191, 716
FokI	GGATG	2 cut(s)	419, 695
FriOI	GRGCYC	2 cut(s)	262, 778
Fsp4HI	GCNGC	2 cut(s)	191, 716
GlaI	GCGC	6 cut(s)	21, 194, 196, 546, 848, 850
GluI	GCNGC	2 cut(s)	191, 716
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	712
HgaI	GACGC	1 cut(s)	826
HhaI	GCGC	6 cut(s)	22, 195, 197, 547, 849, 851
Hin1I	GRCGYC	2 cut(s)	20, 837
Hin1II	CATG	3 cut(s)	398, 416, 572
Hin6I	GCGC	6 cut(s)	20, 193, 195, 545, 847, 849
HinP1I	GCGC	6 cut(s)	20, 193, 195, 545, 847, 849
HinfI	GANTC	8 cut(s)	88, 170, 233, 333, 341, 355, 519, 794
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	8 cut(s)	33, 76, 104, 295, 440, 545, 694, 728
Hpy188I	TCNGA	5 cut(s)	87, 177, 603, 782, 799
Hpy188III	TCNNGA	4 cut(s)	277, 310, 365, 588
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	2 cut(s)	48, 766
HpyCH4III	ACNGT	1 cut(s)	820
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	2 cut(s)	412, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 203, 400, 409
HpyF3I	CTNAG	6 cut(s)	174, 253, 288, 602, 651, 779
HpySE526I	ACGT	1 cut(s)	805
Hsp92I	GRCGYC	2 cut(s)	20, 837
Hsp92II	CATG	3 cut(s)	398, 416, 572
HspAI	GCGC	6 cut(s)	20, 193, 195, 545, 847, 849
KasI	GGCGCC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	367, 445
Kzo9I	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
LmnI	GCTCC	3 cut(s)	4, 190, 224
Lsp1109I	GCAGC	1 cut(s)	727
MaeII	ACGT	1 cut(s)	805
MaeIII	GTNAC	3 cut(s)	283, 428, 533
MalI	GATC	6 cut(s)	230, 314, 369, 381, 447, 612
MboI	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
MboII	GAAGA	3 cut(s)	120, 473, 738
MhlI	GDGCHC	2 cut(s)	262, 778
MluCI	AATT	3 cut(s)	246, 264, 730
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	56, 357
MnlI	CCTC	6 cut(s)	54, 208, 265, 273, 624, 742
MroXI	GAANNNNTTC	1 cut(s)	730
MslI	CAYNNNNRTG	2 cut(s)	441, 456
MspA1I	CMGCKG	2 cut(s)	61, 655
MspI	CCGG	1 cut(s)	712
MspR9I	CCNGG	2 cut(s)	203, 812
MvaI	CCWGG	2 cut(s)	203, 812
MvnI	CGCG	4 cut(s)	193, 195, 847, 849
MwoI	GCNNNNNNNGC	4 cut(s)	154, 203, 400, 409
NarI	GGCGCC	1 cut(s)	20
NdeI	CATATG	2 cut(s)	372, 643
NdeII	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
NlaIII	CATG	3 cut(s)	398, 416, 572
NlaIV	GGNNCC	3 cut(s)	21, 220, 817
NmuCI	GTSAC	3 cut(s)	283, 428, 533
NspI	RCATGY	2 cut(s)	416, 572
NspV	TTCGAA	1 cut(s)	830
PauI	GCGCGC	2 cut(s)	193, 847
PciI	ACATGT	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	7 cut(s)	88, 233, 333, 341, 355, 519, 794
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	192, 717
PleI	GAGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	164
PscI	ACATGT	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	201, 810
PspGI	CCWGG	2 cut(s)	201, 810
PspN4I	GGNNCC	3 cut(s)	21, 220, 817
PspPI	GGNCC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	797
PteI	GCGCGC	2 cut(s)	193, 847
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	441, 456
SatI	GCNGC	2 cut(s)	191, 716
Sau3AI	GATC	6 cut(s)	228, 312, 367, 379, 445, 610
Sau96I	GGNCC	1 cut(s)	816
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	203, 812
SduI	GDGCHC	2 cut(s)	262, 778
SfcI	CTRYAG	2 cut(s)	477, 523
SfoI	GGCGCC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	830
SinI	GGWCC	1 cut(s)	816
SmiMI	CAYNNNNRTG	2 cut(s)	441, 456
Sse9I	AATT	3 cut(s)	246, 264, 730
SsiI	CCGC	6 cut(s)	47, 59, 104, 115, 188, 191
SspDI	GGCGCC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	201, 810
TaaI	ACNGT	1 cut(s)	820
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	3 cut(s)	231, 262, 830
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	3 cut(s)	246, 264, 730
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	7 cut(s)	88, 233, 333, 341, 355, 519, 794
TscAI	CASTG	2 cut(s)	334, 582
TseFI	GTSAC	3 cut(s)	283, 428, 533
TseI	GCWGC	1 cut(s)	715
Tsp45I	GTSAC	3 cut(s)	283, 428, 533
TspDTI	ATGAA	2 cut(s)	474, 570
TspGWI	ACGGA	2 cut(s)	182, 348
TspRI	CASTG	2 cut(s)	334, 582
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	816
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	2 cut(s)	416, 572
XmnI	GAANNNNTTC	1 cut(s)	730
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.