Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Reverse (-)

40393566 .. 40396369

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGGTATCAGCACCACCCGGTGTTCTAAGCTCACCATCCTCTTTCTCATCTCCGCCGCTAAAACCCAGACTCCTCACCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACTTGAGGCTCCAACACATGGACTCTCACTCTCACAGAACCACCACTCCCTCTGCCTCTAACAATGGCCCCGCTCTCATCATTTCCCCTACCGACTCTGGGAAGAGAATTGGGGAGGTTAAGAGAGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACTGGAATTGCTGATTCCAATACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCGCATGGGTTGTTGGACGTGCATGTGAGGGCTACTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTCGCTCTCGCTATTGGAACGGCTCTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTGGGTTATGATCTACAGATACCCACCGAGAGAGTTGGTACCTATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAGGGTGTCCTGTCACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

273

Amino Acids

29.97

Weight (kDa)

7.39

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	106 - 249	2.2e-63	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	2 cut(s)	142, 646
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	3 cut(s)	56, 59, 195
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	556
AdeI	CACNNNGTG	2 cut(s)	23, 473
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	6 cut(s)	93, 142, 222, 318, 569, 646
AgsI	TTSAA	2 cut(s)	464, 727
AjiI	CACGTC	2 cut(s)	376, 773
AloI	GAACNNNNNNTCC	4 cut(s)	154, 186, 621, 653
AluBI	AGCT	4 cut(s)	33, 622, 685, 795
AluI	AGCT	4 cut(s)	33, 622, 685, 795
Alw26I	GTCTC	4 cut(s)	245, 254, 274, 544
AlwI	GGATC	1 cut(s)	354
AoxI	GGCC	2 cut(s)	190, 556
ApeKI	GCWGC	1 cut(s)	682
Asp718I	GGTACC	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	21, 94
AsuHPI	GGTGA	7 cut(s)	27, 70, 407, 485, 512, 661, 695
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	745
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	307, 468
BclI	TGATCA	2 cut(s)	334, 412
BcnI	CCSGG	2 cut(s)	21, 94
BcoDI	GTCTC	4 cut(s)	245, 254, 274, 544
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	59, 683
BlsI	GCNGC	2 cut(s)	60, 684
Bme1390I	CCNGG	2 cut(s)	21, 94
BmgBI	CACGTC	2 cut(s)	376, 773
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	134, 193, 607
BmrFI	CCNGG	2 cut(s)	21, 94
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BoxI	GACNNNNGTC	2 cut(s)	266, 771
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	21, 94
BsaBI	GATNNNNATC	1 cut(s)	414
BsaI	GGTCTC	2 cut(s)	245, 254
BsaJI	CCNNGG	2 cut(s)	255, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 154, 184
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 142, 222, 318, 569, 646
Bse1I	ACTGG	5 cut(s)	301, 322, 397, 549, 640
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	255, 778
BseGI	GGATG	3 cut(s)	38, 399, 675
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	6 cut(s)	93, 142, 222, 318, 569, 646
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	5 cut(s)	301, 322, 397, 549, 640
BseRI	GAGGAG	2 cut(s)	65, 504
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	694
BshFI	GGCC	2 cut(s)	192, 558
BshNI	GGYRCC	1 cut(s)	605
BsiSI	CCGG	3 cut(s)	21, 94, 679
BslI	CCNNNNNNNGG	6 cut(s)	93, 142, 222, 318, 569, 646
BsmAI	GTCTC	4 cut(s)	245, 254, 274, 544
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	2 cut(s)	192, 558
Bso31I	GGTCTC	2 cut(s)	245, 254
Bsp1286I	GDGCHC	2 cut(s)	103, 745
Bsp143I	GATC	4 cut(s)	334, 346, 412, 577
BspACI	CCGC	3 cut(s)	56, 59, 195
BspANI	GGCC	2 cut(s)	192, 558
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	3 cut(s)	134, 193, 607
BspPI	GGATC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	245, 254
BsrBI	CCGCTC	1 cut(s)	197
BsrI	ACTGG	5 cut(s)	301, 322, 397, 549, 640
BssECI	CCNNGG	2 cut(s)	255, 778
BssMI	GATC	4 cut(s)	334, 346, 412, 577
BssT1I	CCWWGG	2 cut(s)	255, 778
Bst6I	CTCTTC	2 cut(s)	221, 750
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	2 cut(s)	29, 618
BstF5I	GGATG	3 cut(s)	38, 399, 675
BstKTI	GATC	4 cut(s)	337, 349, 415, 580
BstMAI	GTCTC	4 cut(s)	245, 254, 274, 544
BstMBI	GATC	4 cut(s)	334, 346, 412, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	783, 792
BstNSI	RCATGY	1 cut(s)	383
BstPAI	GACNNNNGTC	2 cut(s)	266, 771
BstSCI	CCNGG	2 cut(s)	19, 92
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	192, 558
BtrI	CACGTC	2 cut(s)	376, 773
BtsCI	GGATG	3 cut(s)	38, 399, 675
BtsIMutI	CAGTG	2 cut(s)	294, 542
Cac8I	GCNNGC	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	5 cut(s)	142, 362, 380, 528, 536
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	2 cut(s)	29, 618
DpnI	GATC	4 cut(s)	336, 348, 414, 579
DpnII	GATC	4 cut(s)	334, 346, 412, 577
DraIII	CACNNNGTG	2 cut(s)	23, 473
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	221, 750
EarI	CTCTTC	2 cut(s)	221, 750
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	255, 778
Eco24I	GRGCYC	1 cut(s)	745
Eco31I	GGTCTC	2 cut(s)	245, 254
EcoT14I	CCWWGG	2 cut(s)	255, 778
EcoT38I	GRGCYC	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	255, 778
FaeI	CATG	5 cut(s)	145, 365, 383, 531, 539
FatI	CATG	5 cut(s)	141, 361, 379, 527, 535
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	339
FbaI	TGATCA	2 cut(s)	334, 412
Fnu4HI	GCNGC	2 cut(s)	59, 683
FokI	GGATG	3 cut(s)	25, 386, 662
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	2 cut(s)	59, 683
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	2 cut(s)	59, 683
HaeIII	GGCC	2 cut(s)	192, 558
HapII	CCGG	3 cut(s)	21, 94, 679
Hin1II	CATG	5 cut(s)	145, 365, 383, 531, 539
HinfI	GANTC	7 cut(s)	72, 146, 218, 308, 322, 486, 532
HpaII	CCGG	3 cut(s)	21, 94, 679
HphI	GGTGA	7 cut(s)	27, 70, 407, 485, 512, 661, 695
Hpy188III	TCNNGA	2 cut(s)	518, 819
Hpy99I	CGWCG	1 cut(s)	777
HpyAV	CCTTC	5 cut(s)	91, 337, 687, 733, 793
HpyCH4IV	ACGT	3 cut(s)	375, 772, 814
HpyCH4V	TGCA	2 cut(s)	379, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	783, 792
HpyF3I	CTNAG	2 cut(s)	29, 618
HpySE526I	ACGT	3 cut(s)	375, 772, 814
Hsp92II	CATG	5 cut(s)	145, 365, 383, 531, 539
KpnI	GGTACC	1 cut(s)	609
Ksp22I	TGATCA	2 cut(s)	334, 412
Kzo9I	GATC	4 cut(s)	334, 346, 412, 577
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	3 cut(s)	138, 517, 783
Lsp1109I	GCAGC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	3 cut(s)	375, 772, 814
MaeIII	GTNAC	3 cut(s)	395, 500, 810
MalI	GATC	4 cut(s)	336, 348, 414, 579
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	4 cut(s)	334, 346, 412, 577
MboII	GAAGA	3 cut(s)	238, 440, 737
MhlI	GDGCHC	2 cut(s)	103, 745
MluCI	AATT	3 cut(s)	88, 231, 300
MlyI	GAGTC	3 cut(s)	66, 140, 212
MmeI	TCCRAC	3 cut(s)	160, 324, 351
MnlI	CCTC	9 cut(s)	52, 86, 123, 184, 190, 232, 378, 525, 709
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	408, 423
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	3 cut(s)	21, 94, 679
MspR9I	CCNGG	2 cut(s)	21, 94
Mva1269I	GAATGC	1 cut(s)	786
MwoI	GCNNNNNNNGC	2 cut(s)	783, 792
NciI	CCSGG	2 cut(s)	21, 94
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	4 cut(s)	334, 346, 412, 577
NlaIII	CATG	5 cut(s)	145, 365, 383, 531, 539
NlaIV	GGNNCC	3 cut(s)	134, 193, 607
NmuCI	GTSAC	3 cut(s)	395, 500, 810
NspI	RCATGY	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	750
PctI	GAATGC	1 cut(s)	786
PfeI	GAWTC	4 cut(s)	308, 322, 486, 532
PflMI	CCANNNNNTGG	2 cut(s)	142, 646
PkrI	GCNGC	2 cut(s)	60, 684
PleI	GAGTC	3 cut(s)	66, 140, 212
PpsI	GAGTC	3 cut(s)	66, 140, 212
PshAI	GACNNNNGTC	2 cut(s)	266, 771
PspN4I	GGNNCC	3 cut(s)	134, 193, 607
PspPI	GGNCC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
RseI	CAYNNNNRTG	2 cut(s)	408, 423
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	59, 683
Sau3AI	GATC	4 cut(s)	334, 346, 412, 577
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	3 cut(s)	66, 140, 212
ScrFI	CCNGG	2 cut(s)	21, 94
SduI	GDGCHC	2 cut(s)	103, 745
SfcI	CTRYAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	408, 423
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	88, 231, 300
SsiI	CCGC	3 cut(s)	56, 59, 195
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	2 cut(s)	19, 92
StyI	CCWWGG	2 cut(s)	255, 778
TaiI	ACGT	3 cut(s)	378, 775, 817
TaqI	TCGA	2 cut(s)	748, 797
TasI	AATT	3 cut(s)	88, 231, 300
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	4 cut(s)	308, 322, 486, 532
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	301, 549
TseFI	GTSAC	3 cut(s)	395, 500, 810
TseI	GCWGC	1 cut(s)	682
Tsp45I	GTSAC	3 cut(s)	395, 500, 810
TspDTI	ATGAA	3 cut(s)	441, 524, 537
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	2 cut(s)	301, 549
Van91I	CCANNNNNTGG	2 cut(s)	142, 646
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.