Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029602.1

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 629

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029602.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

gtcaaaataaaccttgacggcaccggaattgctgattccagtactgggattcccttccttgatcatatgttggatcaacttgcttcgcacgggttgttggacgtgcatgtgagggcagctggtgacacccacattgatgatcatcacacaaatgaagacgtcgctcttgctattggaacggctctgcttcaagcactgggtgatagaaaaggaatcaacaggtttggtgacttctctgctcctcttgatgaagcatggattcatgtctcactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

91

Amino Acids

9.7

Weight (kDa)

4.81

Isoelectric Point (pI)

13.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	134, 212, 239
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	128
BceAI	ACGGC	2 cut(s)	34, 195
BclI	TGATCA	2 cut(s)	61, 139
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	22
BmrI	ACTGGG	2 cut(s)	54, 206
BmuI	ACTGGG	2 cut(s)	54, 206
BpiI	GAAGAC	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	39, 49, 201
Bse8I	GATNNNNATC	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	39, 49, 201
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	61, 73, 139
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	39, 49, 201
BssMI	GATC	3 cut(s)	61, 73, 139
BssNI	GRCGYC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	64, 76, 142
BstMBI	GATC	3 cut(s)	61, 73, 139
BstNSI	RCATGY	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	194, 269
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	3 cut(s)	107, 255, 263
CviJI	RGCY	2 cut(s)	119, 182
CviKI_1	RGCY	2 cut(s)	119, 182
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	3 cut(s)	63, 75, 141
DpnII	GATC	3 cut(s)	61, 73, 139
DraIII	CACNNNGTG	1 cut(s)	200
FaeI	CATG	3 cut(s)	110, 258, 266
FaiI	YATR	5 cut(s)	66, 68, 108, 256, 264
FatI	CATG	3 cut(s)	106, 254, 262
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	2 cut(s)	61, 139
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	110, 258, 266
HinfI	GANTC	4 cut(s)	35, 49, 213, 259
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	3 cut(s)	134, 212, 239
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	102, 159
HpyCH4V	TGCA	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	102, 159
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	110, 258, 266
Ksp22I	TGATCA	2 cut(s)	61, 139
Kzo9I	GATC	3 cut(s)	61, 73, 139
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	30, 37, 52, 105, 182, 205
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	2 cut(s)	102, 159
MaeIII	GTNAC	2 cut(s)	122, 227
MalI	GATC	3 cut(s)	63, 75, 141
MboI	GATC	3 cut(s)	61, 73, 139
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	51, 78
MnlI	CCTC	2 cut(s)	105, 252
MslI	CAYNNNNRTG	2 cut(s)	135, 150
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	3 cut(s)	61, 73, 139
NlaIII	CATG	3 cut(s)	110, 258, 266
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	2 cut(s)	122, 227
NspI	RCATGY	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	35, 49, 213, 259
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	135, 150
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	61, 73, 139
ScaI	AGTACT	1 cut(s)	43
SetI	ASST	5 cut(s)	15, 105, 121, 162, 224
SmiMI	CAYNNNNRTG	2 cut(s)	135, 150
Sse9I	AATT	1 cut(s)	27
TaiI	ACGT	2 cut(s)	105, 162
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	4 cut(s)	35, 49, 213, 259
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	122, 227
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	122, 227
TspDTI	ATGAA	3 cut(s)	168, 251, 264
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.