Rmu_sc0029603.1_g000001

Belongs to the imidazoleglycerol-phosphate dehydratase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029603.1
Physical Location & Seq
Forward (+)
1 .. 625
625 bp
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UTR
Exon/CDS
Intron
Rmu_sc0029603.1_g000001.1.cds

Sequence Viewer

Length: 273 bp
gtcaaaataaaccttgacggcaccggaattgctgattccagtactgggattcccttccttgatcatatgttggatcaacttgcttcgcacgggttgttggacgtgcatgtgagggcaactggtgacacccacattgatgatcatcacacaaatgaagatgtcgctcttgctattggaacggctttgcttcaagcacttggtgatagaaaaggaatcaacaggtttggtgacttctctgctcctcttgatgaagcatggattcatgtctcactg

Protein Analysis

91

Amino Acids

9.73

Weight (kDa)

4.81

Isoelectric Point (pI)

12.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AclWI GGATC 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 191
AjiI CACGTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 134, 212, 239
BanI GGYRCC 1 cut(s) 20
BceAI ACGGC 2 cut(s) 34, 195
BclI TGATCA 2 cut(s) 61, 139
BmcAI AGTACT 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 3 cut(s) 39, 49, 124
Bse8I GATNNNNATC 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 39, 49, 124
BseRI GAGGAG 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 45
Bsp143I GATC 3 cut(s) 61, 73, 139
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 20
BsrI ACTGG 3 cut(s) 39, 49, 124
BssMI GATC 3 cut(s) 61, 73, 139
BstKTI GATC 3 cut(s) 64, 76, 142
BstMBI GATC 3 cut(s) 61, 73, 139
BstNSI RCATGY 1 cut(s) 110
BtrI CACGTC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 269
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 107, 255, 263
CviJI RGCY 1 cut(s) 182
CviKI_1 RGCY 1 cut(s) 182
CviQI GTAC 1 cut(s) 42
DpnI GATC 3 cut(s) 63, 75, 141
DpnII GATC 3 cut(s) 61, 73, 139
DraIII CACNNNGTG 1 cut(s) 200
FaeI CATG 3 cut(s) 110, 258, 266
FaiI YATR 5 cut(s) 66, 68, 108, 256, 264
FatI CATG 3 cut(s) 106, 254, 262
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 2 cut(s) 61, 139
HapII CCGG 1 cut(s) 24
Hin1II CATG 3 cut(s) 110, 258, 266
HinfI GANTC 4 cut(s) 35, 49, 213, 259
HpaII CCGG 1 cut(s) 24
HphI GGTGA 3 cut(s) 134, 212, 239
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 110, 258, 266
Ksp22I TGATCA 2 cut(s) 61, 139
Kzo9I GATC 3 cut(s) 61, 73, 139
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 30, 37, 52, 105, 205
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 122, 227
MalI GATC 3 cut(s) 63, 75, 141
MboI GATC 3 cut(s) 61, 73, 139
MboII GAAGA 1 cut(s) 167
MluCI AATT 1 cut(s) 27
MmeI TCCRAC 2 cut(s) 51, 78
MnlI CCTC 2 cut(s) 105, 252
MslI CAYNNNNRTG 2 cut(s) 135, 150
MspI CCGG 1 cut(s) 24
NdeI CATATG 1 cut(s) 66
NdeII GATC 3 cut(s) 61, 73, 139
NlaIII CATG 3 cut(s) 110, 258, 266
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 122, 227
NspI RCATGY 1 cut(s) 110
PfeI GAWTC 4 cut(s) 35, 49, 213, 259
PspN4I GGNNCC 1 cut(s) 22
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 2 cut(s) 135, 150
Sau3AI GATC 3 cut(s) 61, 73, 139
ScaI AGTACT 1 cut(s) 43
SetI ASST 3 cut(s) 15, 105, 224
SmiMI CAYNNNNRTG 2 cut(s) 135, 150
Sse9I AATT 1 cut(s) 27
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 4 cut(s) 35, 49, 213, 259
TseFI GTSAC 2 cut(s) 122, 227
Tsp45I GTSAC 2 cut(s) 122, 227
TspDTI ATGAA 3 cut(s) 168, 251, 264
XceI RCATGY 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.