Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

17174436 .. 17177048

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1193500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGCTGTCACTTTCCGCGCCACCCAGTATTCCAACCTCTTCACCTACGCCGCTAAAACGGCGGGTTACCTTCGCGGTTTCTCGTCCGAATCTCACACCCGCTCCGCCGTCTCACCGGCCATCACTTTCTTCACTAAAACCAAACCACCTCCACCGCTTAAAGCTCAAAGCCATGGACTCTCAGAGAGCAGCTCCGCCGCGCGCCTCCCTGGCCGAAAACAACGGCTCCACTCTCACCGATACTCCAACCCCAACTAACTCAGGGGCTCGAATTGGGGAGGTCAAGAGGGTGACTAAAGAGACCAATGTCTCGGTCAAGATCAACCTGGACGGTACTGGAATCGCTGAATCCAGTACTGGGATTCCGTTTCTTGATCATATGTTGGATCAACTTGCTTCGCATGGGTTGCTGGATGTGCATGTAAAGGCTACTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTTGCTCTTGCTATTGGAACGGCTTTGCTTCAAGCACTTGGCGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCACTTGATGAAGCACTCATACATGTCTCATTGGATTTATCTGGCCGGCCACATTTGAGTTATGATCTTCAGATACCCACCGAGAGGGTTGGCACATATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTCCACATCCGGCAGCTTGCTGGAAGAAATTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTCAGACAAGCAACAGAATCTGACCCACGTCGCCTGGGGGCCGTGCCAAGTTCGAAAGGCGTCTTGTCACGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

288

Amino Acids

30.99

Weight (kDa)

9.25

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	120 - 263	2e-64	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	4 cut(s)	20, 77, 202, 204
AciI	CCGC	9 cut(s)	18, 53, 64, 77, 102, 107, 157, 197, 200
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	4 cut(s)	119, 213, 598, 602
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	846
AfaI	GTAC	2 cut(s)	337, 358
AfiI	CCNNNNNNNGG	3 cut(s)	360, 639, 688
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	506, 769
AjiI	CACGTC	1 cut(s)	815
AjnI	CCWGG	3 cut(s)	210, 327, 819
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	5 cut(s)	7, 166, 194, 664, 727
AluI	AGCT	5 cut(s)	7, 166, 194, 664, 727
Alw26I	GTCTC	4 cut(s)	117, 296, 316, 586
AlwI	GGATC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	5 cut(s)	119, 213, 598, 602, 825
ApeKI	GCWGC	2 cut(s)	191, 724
ApoI	RAATTY	1 cut(s)	739
Asp700I	GAANNNNTTC	1 cut(s)	739
AspLEI	GCGC	3 cut(s)	22, 204, 206
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	8 cut(s)	36, 107, 229, 304, 449, 554, 703, 737
AsuII	TTCGAA	1 cut(s)	839
BanII	GRGCYC	2 cut(s)	271, 787
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
BbvI	GCAGC	2 cut(s)	203, 736
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	5 cut(s)	77, 94, 241, 510, 812
BciT130I	CCWGG	3 cut(s)	212, 329, 821
BclI	TGATCA	2 cut(s)	376, 454
BcoDI	GTCTC	4 cut(s)	117, 296, 316, 586
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	53, 192, 200, 725
BlsI	GCNGC	4 cut(s)	54, 193, 201, 726
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	3 cut(s)	212, 329, 821
BmgBI	CACGTC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	229, 826
BmrFI	CCNGG	3 cut(s)	212, 329, 821
BmrI	ACTGGG	2 cut(s)	21, 369
BmuI	ACTGGG	2 cut(s)	21, 369
BoxI	GACNNNNGTC	2 cut(s)	308, 813
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu14I	TTCGAA	1 cut(s)	839
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	846
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	174, 210, 820
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 212, 229, 242, 259
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 639, 688
Bse118I	RCCGGY	2 cut(s)	117, 600
Bse1I	ACTGG	6 cut(s)	27, 343, 354, 364, 439, 682
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	212, 329, 821
BseDI	CCNNGG	3 cut(s)	174, 210, 820
BseGI	GGATG	3 cut(s)	421, 441, 717
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	360, 639, 688
BseMII	CTCAG	4 cut(s)	197, 276, 674, 802
BseNI	ACTGG	6 cut(s)	27, 343, 354, 364, 439, 682
BsePI	GCGCGC	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	203, 736
Bsh1236I	CGCG	4 cut(s)	20, 77, 202, 204
BshFI	GGCC	5 cut(s)	121, 215, 600, 604, 827
BsiSI	CCGG	3 cut(s)	118, 601, 721
BslI	CCNNNNNNNGG	3 cut(s)	360, 639, 688
BsmAI	GTCTC	4 cut(s)	117, 296, 316, 586
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	5 cut(s)	121, 215, 600, 604, 827
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	271, 787
Bsp143I	GATC	5 cut(s)	321, 376, 388, 454, 619
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	9 cut(s)	18, 53, 64, 77, 102, 107, 157, 197, 200
BspANI	GGCC	5 cut(s)	121, 215, 600, 604, 827
BspCNI	CTCAG	4 cut(s)	196, 275, 673, 801
BspFNI	CGCG	4 cut(s)	20, 77, 202, 204
BspLI	GGNNCC	2 cut(s)	229, 826
BspPI	GGATC	1 cut(s)	396
BspT104I	TTCGAA	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	2 cut(s)	117, 600
BsrI	ACTGG	6 cut(s)	27, 343, 354, 364, 439, 682
BssAI	RCCGGY	2 cut(s)	117, 600
BssECI	CCNNGG	3 cut(s)	174, 210, 820
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	5 cut(s)	321, 376, 388, 454, 619
BssNI	GRCGYC	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	212, 329, 821
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	846
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstBI	TTCGAA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	204, 602, 729
BstDEI	CTNAG	4 cut(s)	183, 262, 660, 788
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	421, 441, 717
BstFNI	CGCG	4 cut(s)	20, 77, 202, 204
BstHHI	GCGC	3 cut(s)	22, 204, 206
BstKTI	GATC	5 cut(s)	324, 379, 391, 457, 622
BstMAI	GTCTC	4 cut(s)	117, 296, 316, 586
BstMBI	GATC	5 cut(s)	321, 376, 388, 454, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 212, 409, 418
BstNI	CCWGG	3 cut(s)	212, 329, 821
BstNSI	RCATGY	2 cut(s)	425, 581
BstPAI	GACNNNNGTC	2 cut(s)	308, 813
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	210, 327, 819
BstUI	CGCG	4 cut(s)	20, 77, 202, 204
BstV1I	GCAGC	2 cut(s)	203, 736
BsuRI	GGCC	5 cut(s)	121, 215, 600, 604, 827
BtgI	CCRYGG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	815
BtsCI	GGATG	3 cut(s)	421, 441, 717
Cac8I	GCNNGC	3 cut(s)	204, 602, 729
CaiI	CAGNNNCTG	1 cut(s)	806
CfoI	GCGC	3 cut(s)	22, 204, 206
Cfr10I	RCCGGY	2 cut(s)	117, 600
Cfr13I	GGNCC	1 cut(s)	825
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	336, 357
CviAII	CATG	4 cut(s)	175, 404, 422, 578
CviQI	GTAC	2 cut(s)	336, 357
DdeI	CTNAG	4 cut(s)	183, 262, 660, 788
DpnI	GATC	5 cut(s)	323, 378, 390, 456, 621
DpnII	GATC	5 cut(s)	321, 376, 388, 454, 619
EaeI	YGGCCR	4 cut(s)	119, 213, 598, 602
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	2 cut(s)	96, 186
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	271, 787
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	608
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	210, 327, 819
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	271, 787
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	4 cut(s)	178, 407, 425, 581
FatI	CATG	4 cut(s)	174, 403, 421, 577
FauI	CCCGC	2 cut(s)	57, 109
FauNDI	CATATG	2 cut(s)	381, 652
FbaI	TGATCA	2 cut(s)	376, 454
Fnu4HI	GCNGC	4 cut(s)	53, 192, 200, 725
FokI	GGATG	3 cut(s)	428, 428, 704
FriOI	GRGCYC	2 cut(s)	271, 787
FseI	GGCCGGCC	1 cut(s)	604
Fsp4HI	GCNGC	4 cut(s)	53, 192, 200, 725
GlaI	GCGC	3 cut(s)	21, 203, 205
GluI	GCNGC	4 cut(s)	53, 192, 200, 725
HaeIII	GGCC	5 cut(s)	121, 215, 600, 604, 827
HapII	CCGG	3 cut(s)	118, 601, 721
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	3 cut(s)	22, 204, 206
Hin1I	GRCGYC	1 cut(s)	846
Hin1II	CATG	4 cut(s)	178, 407, 425, 581
Hin6I	GCGC	3 cut(s)	20, 202, 204
HinP1I	GCGC	3 cut(s)	20, 202, 204
HinfI	GANTC	7 cut(s)	91, 179, 342, 350, 364, 528, 803
HpaII	CCGG	3 cut(s)	118, 601, 721
HphI	GGTGA	8 cut(s)	36, 107, 229, 304, 449, 554, 703, 737
Hpy188I	TCNGA	5 cut(s)	90, 186, 627, 791, 808
Hpy188III	TCNNGA	4 cut(s)	286, 319, 374, 861
Hpy99I	CGWCG	1 cut(s)	819
HpyAV	CCTTC	2 cut(s)	82, 775
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	2 cut(s)	421, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 212, 409, 418
HpyF3I	CTNAG	4 cut(s)	183, 262, 660, 788
HpySE526I	ACGT	1 cut(s)	814
Hsp92I	GRCGYC	1 cut(s)	846
Hsp92II	CATG	4 cut(s)	178, 407, 425, 581
HspAI	GCGC	3 cut(s)	20, 202, 204
KroI	GCCGGC	1 cut(s)	600
KroNI	GCCGGC	1 cut(s)	602
Ksp22I	TGATCA	2 cut(s)	376, 454
Kzo9I	GATC	5 cut(s)	321, 376, 388, 454, 619
LmnI	GCTCC	5 cut(s)	4, 109, 199, 233, 559
Lsp1109I	GCAGC	2 cut(s)	203, 736
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	6 cut(s)	9, 67, 292, 437, 542, 852
MalI	GATC	5 cut(s)	323, 378, 390, 456, 621
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	5 cut(s)	321, 376, 388, 454, 619
MboII	GAAGA	5 cut(s)	33, 123, 482, 614, 747
MhlI	GDGCHC	2 cut(s)	271, 787
MluCI	AATT	2 cut(s)	273, 739
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	3 cut(s)	59, 272, 366
MnlI	CCTC	7 cut(s)	49, 161, 217, 274, 282, 633, 751
MroNI	GCCGGC	1 cut(s)	600
MroXI	GAANNNNTTC	1 cut(s)	739
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	450, 465
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	3 cut(s)	118, 601, 721
MspR9I	CCNGG	3 cut(s)	212, 329, 821
MvaI	CCWGG	3 cut(s)	212, 329, 821
MvnI	CGCG	4 cut(s)	20, 77, 202, 204
MwoI	GCNNNNNNNGC	4 cut(s)	61, 212, 409, 418
NaeI	GCCGGC	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	2 cut(s)	381, 652
NdeII	GATC	5 cut(s)	321, 376, 388, 454, 619
NgoMIV	GCCGGC	1 cut(s)	600
NlaIII	CATG	4 cut(s)	178, 407, 425, 581
NlaIV	GGNNCC	2 cut(s)	229, 826
NmuCI	GTSAC	5 cut(s)	9, 292, 437, 542, 852
NspI	RCATGY	2 cut(s)	425, 581
NspV	TTCGAA	1 cut(s)	839
PauI	GCGCGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	739
PfeI	GAWTC	6 cut(s)	91, 342, 350, 364, 528, 803
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	54, 193, 201, 726
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	577
PshAI	GACNNNNGTC	2 cut(s)	308, 813
Psp6I	CCWGG	3 cut(s)	210, 327, 819
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	210, 327, 819
PspN4I	GGNNCC	2 cut(s)	229, 826
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	806
PteI	GCGCGC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	664
RigI	GGCCGGCC	1 cut(s)	604
RsaI	GTAC	2 cut(s)	337, 358
RsaNI	GTAC	2 cut(s)	336, 357
RseI	CAYNNNNRTG	2 cut(s)	450, 465
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	4 cut(s)	53, 192, 200, 725
Sau3AI	GATC	5 cut(s)	321, 376, 388, 454, 619
Sau96I	GGNCC	1 cut(s)	825
ScaI	AGTACT	1 cut(s)	358
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	212, 329, 821
SduI	GDGCHC	2 cut(s)	271, 787
SfuI	TTCGAA	1 cut(s)	839
SmiMI	CAYNNNNRTG	2 cut(s)	450, 465
Sse9I	AATT	2 cut(s)	273, 739
SsiI	CCGC	9 cut(s)	18, 53, 64, 77, 102, 107, 157, 197, 200
StyD4I	CCNGG	3 cut(s)	210, 327, 819
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	2 cut(s)	271, 839
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	273, 739
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	2 cut(s)	55, 202
TfiI	GAWTC	6 cut(s)	91, 342, 350, 364, 528, 803
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseFI	GTSAC	5 cut(s)	9, 292, 437, 542, 852
TseI	GCWGC	2 cut(s)	191, 724
Tsp45I	GTSAC	5 cut(s)	9, 292, 437, 542, 852
TspDTI	ATGAA	2 cut(s)	483, 579
TspGWI	ACGGA	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	688
XapI	RAATTY	1 cut(s)	739
XceI	RCATGY	2 cut(s)	425, 581
XmnI	GAANNNNTTC	1 cut(s)	739
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.