Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Forward (+)

19242656 .. 19245842

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGTATCAGCCCCACCCGGTGTTCTACGCTCACCGTCTTCACTCTCATCTCCGCCGCTAAAATCCGGACTCCTCACCTTCTCCACTTCCCGGCGGGCACATCTCCCACGCAAGCAGCAGCACCACTTGAATCTCAGACACATGGACTCTTCTCACTCTCACAGAATCATCACTCCCTGTGCGGCCAACAATGGCTACTCCACTCTCACCGATTCCCCTACTGCCTCTGGGGCGAGAATTGGGGAGGTTAAGAGAGAGACCAAGGAGACCAATGTATCGGTCAAGATAAACCTTGACGGCACTGGAATTGCTGATTCCAATACTGGGATTCCTTTCCTTGATCATATGTTGGATCAACTGGCGTCGCATGGGTTGTTGGACGTGCATGTGAGGGCTACCGGTGACATCCACATTGATGATCATCACACGAATGAAGATGTCGCTCTTGCTATTGGAACGGCTTTGCTTCAAGCGCTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCTTGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTGGGATATGATCTACAGATACCCACCCAGAGAGTTGGTACCTATGACACTCAGTTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACGCTTCATATTCGGCAGCTTTCTGGAAGGAATTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATGTGATCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAAGGTGTCCTGTCACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

277

Amino Acids

30.11

Weight (kDa)

7.98

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	109 - 252	2.9e-63	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	4 cut(s)	56, 59, 97, 185
AclWI	GGATC	2 cut(s)	363, 770
AcoI	YGGCCR	2 cut(s)	186, 565
AcsI	RAATTY	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	616
AfeI	AGCGCT	1 cut(s)	477
AfiI	CCNNNNNNNGG	4 cut(s)	93, 327, 578, 655
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	133, 473, 736
AjiI	CACGTC	2 cut(s)	385, 782
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
AluBI	AGCT	3 cut(s)	536, 694, 804
AluI	AGCT	3 cut(s)	536, 694, 804
Alw26I	GTCTC	3 cut(s)	254, 263, 553
AlwI	GGATC	2 cut(s)	363, 770
Aor13HI	TCCGGA	1 cut(s)	68
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	2 cut(s)	186, 565
ApeKI	GCWGC	3 cut(s)	118, 121, 691
ApoI	RAATTY	1 cut(s)	706
AsiGI	ACCGGT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	706
Asp718I	GGTACC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	478
AsuC2I	CCSGG	2 cut(s)	21, 94
AsuHPI	GGTGA	8 cut(s)	27, 70, 202, 416, 494, 521, 670, 704
BaeGI	GKGCMC	1 cut(s)	103
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	130, 133, 703
BceAI	ACGGC	2 cut(s)	316, 477
BclI	TGATCA	2 cut(s)	343, 421
BcnI	CCSGG	2 cut(s)	21, 94
BcoDI	GTCTC	3 cut(s)	254, 263, 553
BfaI	CTAG	1 cut(s)	767
BfmI	CTRYAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	5 cut(s)	59, 119, 122, 186, 692
BlsI	GCNGC	5 cut(s)	60, 120, 123, 187, 693
Bme1390I	CCNGG	2 cut(s)	21, 94
BmgBI	CACGTC	2 cut(s)	385, 782
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	21, 94
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	21, 94
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	365
BsaI	GGTCTC	2 cut(s)	254, 263
BsaJI	CCNNGG	2 cut(s)	264, 787
BsaWI	WCCGGW	2 cut(s)	68, 401
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 327, 578, 655
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	5 cut(s)	310, 331, 366, 558, 649
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	264, 787
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	93, 327, 578, 655
BseMII	CTCAG	2 cut(s)	151, 641
BseNI	ACTGG	5 cut(s)	310, 331, 366, 558, 649
BseRI	GAGGAG	2 cut(s)	65, 513
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	130, 133, 703
BshFI	GGCC	2 cut(s)	188, 567
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	21, 69, 94, 402
BslI	CCNNNNNNNGG	4 cut(s)	93, 327, 578, 655
BsmAI	GTCTC	3 cut(s)	254, 263, 553
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	188, 567
Bso31I	GGTCTC	2 cut(s)	254, 263
Bsp1286I	GDGCHC	2 cut(s)	103, 754
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	343, 355, 421, 586, 775
BspACI	CCGC	4 cut(s)	56, 59, 97, 185
BspANI	GGCC	2 cut(s)	188, 567
BspCNI	CTCAG	2 cut(s)	150, 640
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	363, 770
BspQI	GCTCTTC	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	2 cut(s)	254, 263
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	5 cut(s)	310, 331, 366, 558, 649
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	264, 787
BssMI	GATC	5 cut(s)	343, 355, 421, 586, 775
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	264, 787
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	157, 759
BstACI	GRCGYC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	99, 116
BstDEI	CTNAG	2 cut(s)	137, 627
BstF5I	GGATG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	346, 358, 424, 589, 778
BstMAI	GTCTC	3 cut(s)	254, 263, 553
BstMBI	GATC	5 cut(s)	343, 355, 421, 586, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 475, 792, 801
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	19, 92
BstSFI	CTRYAG	1 cut(s)	590
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	130, 133, 703
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	188, 567
BtrI	CACGTC	2 cut(s)	385, 782
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	303, 551
Cac8I	GCNNGC	2 cut(s)	99, 116
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	401
CseI	GACGC	2 cut(s)	354, 685
Csp6I	GTAC	1 cut(s)	615
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	4 cut(s)	145, 371, 389, 545
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	2 cut(s)	137, 627
DpnI	GATC	5 cut(s)	345, 357, 423, 588, 777
DpnII	GATC	5 cut(s)	343, 355, 421, 586, 775
DraIII	CACNNNGTG	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	186, 565
Eam1104I	CTCTTC	2 cut(s)	157, 759
EarI	CTCTTC	2 cut(s)	157, 759
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	264, 787
Eco24I	GRGCYC	1 cut(s)	754
Eco31I	GGTCTC	2 cut(s)	254, 263
Eco47III	AGCGCT	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	264, 787
EcoT38I	GRGCYC	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	264, 787
FaeI	CATG	4 cut(s)	148, 374, 392, 548
FatI	CATG	4 cut(s)	144, 370, 388, 544
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	348
FbaI	TGATCA	2 cut(s)	343, 421
Fnu4HI	GCNGC	5 cut(s)	59, 119, 122, 186, 692
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	5 cut(s)	59, 119, 122, 186, 692
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	59, 119, 122, 186, 692
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	188, 567
HapII	CCGG	4 cut(s)	21, 69, 94, 402
HgaI	GACGC	2 cut(s)	354, 685
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	4 cut(s)	148, 374, 392, 548
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	9 cut(s)	72, 133, 149, 168, 215, 317, 331, 495, 541
HpaII	CCGG	4 cut(s)	21, 69, 94, 402
HphI	GGTGA	8 cut(s)	27, 70, 202, 416, 494, 521, 670, 704
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	5 cut(s)	69, 286, 527, 699, 828
Hpy99I	CGWCG	2 cut(s)	370, 786
HpyAV	CCTTC	3 cut(s)	91, 696, 742
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	3 cut(s)	384, 781, 823
HpyCH4V	TGCA	2 cut(s)	388, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 475, 792, 801
HpyF3I	CTNAG	2 cut(s)	137, 627
HpySE526I	ACGT	3 cut(s)	384, 781, 823
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	4 cut(s)	148, 374, 392, 548
HspAI	GCGC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	618
Ksp22I	TGATCA	2 cut(s)	343, 421
Kzo9I	GATC	5 cut(s)	343, 355, 421, 586, 775
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	2 cut(s)	526, 792
Lsp1109I	GCAGC	3 cut(s)	130, 133, 703
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	3 cut(s)	384, 781, 823
MaeIII	GTNAC	3 cut(s)	404, 509, 819
MalI	GATC	5 cut(s)	345, 357, 423, 588, 777
MboI	GATC	5 cut(s)	343, 355, 421, 586, 775
MboII	GAAGA	4 cut(s)	33, 144, 449, 746
MhlI	GDGCHC	2 cut(s)	103, 754
MluCI	AATT	3 cut(s)	240, 309, 706
MlyI	GAGTC	2 cut(s)	66, 143
MmeI	TCCRAC	2 cut(s)	333, 360
MnlI	CCTC	6 cut(s)	86, 238, 241, 387, 534, 718
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	706
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	3 cut(s)	417, 432, 769
MspI	CCGG	4 cut(s)	21, 69, 94, 402
MspR9I	CCNGG	2 cut(s)	21, 94
Mva1269I	GAATGC	1 cut(s)	795
MwoI	GCNNNNNNNGC	4 cut(s)	233, 475, 792, 801
NciI	CCSGG	2 cut(s)	21, 94
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	5 cut(s)	343, 355, 421, 586, 775
NlaIII	CATG	4 cut(s)	148, 374, 392, 548
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	3 cut(s)	404, 509, 819
NspI	RCATGY	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	759
PctI	GAATGC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	7 cut(s)	133, 168, 215, 317, 331, 495, 541
PflMI	CCANNNNNTGG	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	5 cut(s)	60, 120, 123, 187, 693
PleI	GAGTC	2 cut(s)	66, 143
PpsI	GAGTC	2 cut(s)	66, 143
PspN4I	GGNNCC	1 cut(s)	616
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	3 cut(s)	417, 432, 769
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	5 cut(s)	59, 119, 122, 186, 692
Sau3AI	GATC	5 cut(s)	343, 355, 421, 586, 775
SchI	GAGTC	2 cut(s)	66, 143
ScrFI	CCNGG	2 cut(s)	21, 94
SduI	GDGCHC	2 cut(s)	103, 754
SfcI	CTRYAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	3 cut(s)	417, 432, 769
Sse9I	AATT	3 cut(s)	240, 309, 706
SsiI	CCGC	4 cut(s)	56, 59, 97, 185
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	19, 92
StyI	CCWWGG	2 cut(s)	264, 787
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	3 cut(s)	387, 784, 826
TaqI	TCGA	2 cut(s)	757, 806
TaqII	GACCGA	1 cut(s)	271
TasI	AATT	3 cut(s)	240, 309, 706
TauI	GCSGC	2 cut(s)	61, 188
TfiI	GAWTC	7 cut(s)	133, 168, 215, 317, 331, 495, 541
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	310, 558
TseFI	GTSAC	3 cut(s)	404, 509, 819
TseI	GCWGC	3 cut(s)	118, 121, 691
Tsp45I	GTSAC	3 cut(s)	404, 509, 819
TspDTI	ATGAA	4 cut(s)	450, 533, 546, 671
TspRI	CASTG	2 cut(s)	310, 558
Van91I	CCANNNNNTGG	1 cut(s)	655
XapI	RAATTY	1 cut(s)	706
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	706
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.