Rh4CG213600

Belongs to the imidazoleglycerol-phosphate dehydratase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007204
Physical Location & Seq
Forward (+)
44361824 .. 44364324
2501 bp
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UTR
Exon/CDS
Intron
Rh4CG213600.1

Sequence Viewer

Length: 828 bp
ATGGAGGTATCAGCACCACCCGGTGTTCTAAGCTCACCATCCTCACCTTTCTCATCTCCGCCGCTAAAACCCAGACTCCTCACCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACCTGAAGCTCCAACACATGGACTCTCACTCCCACAGAACCATCACTCCCTCTGCCTCTTACAATGGCTCCACTCTCACCGCCGATTCCCCTACTGGCTCTGGGAAGAGAATTGGGGAGGTTAAGAGGGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACCGGAATTGCTGATTCCAGTACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCGCACGGGTTGTTGGACGTGCATGTGAGGGCTACTGGTGACATCCACATTGATGATCATCACACAAATGAAGACGTCGCTCTTGCTATTGGAACGGCTCTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTGGGTTATGATCTACAGATACCCACCGAGAGAGTTGGTACCTATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAAGGTGTCCTGTCACGTTCTTGA

Protein Analysis

275

Amino Acids

30.09

Weight (kDa)

7.38

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IGPD PF00475 108 - 251 2.3e-63 Imidazoleglycerol-phosphate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 2 cut(s) 299, 611
AccB7I CCANNNNNTGG 2 cut(s) 145, 652
AciI CCGC 3 cut(s) 59, 62, 207
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 438
AdeI CACNNNGTG 2 cut(s) 23, 479
AfaI GTAC 2 cut(s) 322, 613
AfiI CCNNNNNNNGG 5 cut(s) 96, 145, 324, 575, 652
AgsI TTSAA 2 cut(s) 470, 733
AjiI CACGTC 2 cut(s) 382, 779
AloI GAACNNNNNNTCC 4 cut(s) 157, 189, 627, 659
AluBI AGCT 5 cut(s) 33, 136, 628, 691, 801
AluI AGCT 5 cut(s) 33, 136, 628, 691, 801
Alw26I GTCTC 4 cut(s) 251, 260, 280, 550
AlwI GGATC 1 cut(s) 360
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 688
Asp718I GGTACC 1 cut(s) 611
AsuC2I CCSGG 2 cut(s) 21, 97
AsuHPI GGTGA 9 cut(s) 27, 36, 73, 196, 413, 491, 518, 667, 701
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 2 cut(s) 299, 611
BanII GRGCYC 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 700
BccI CCATC 2 cut(s) 46, 176
BceAI ACGGC 2 cut(s) 313, 474
BclI TGATCA 2 cut(s) 340, 418
BcnI CCSGG 2 cut(s) 21, 97
BcoDI GTCTC 4 cut(s) 251, 260, 280, 550
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 1 cut(s) 587
BisI GCNGC 2 cut(s) 62, 689
BlsI GCNGC 2 cut(s) 63, 690
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 21, 97
BmgBI CACGTC 2 cut(s) 382, 779
BmiI GGNNCC 3 cut(s) 196, 301, 613
BmrFI CCNGG 2 cut(s) 21, 97
BmrI ACTGGG 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 333
BoxI GACNNNNGTC 2 cut(s) 272, 777
BpiI GAAGAC 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 21, 97
BsaBI GATNNNNATC 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 438
BsaI GGTCTC 2 cut(s) 251, 260
BsaJI CCNNGG 2 cut(s) 261, 784
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 8 cut(s) 60, 90, 140, 157, 170, 179, 187, 209
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 145, 324, 575, 652
Bse1I ACTGG 6 cut(s) 226, 318, 328, 403, 555, 646
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 261, 784
BseGI GGATG 3 cut(s) 38, 405, 681
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 5 cut(s) 96, 145, 324, 575, 652
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 6 cut(s) 226, 318, 328, 403, 555, 646
BseRI GAGGAG 2 cut(s) 68, 510
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 700
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 2 cut(s) 299, 611
BsiSI CCGG 4 cut(s) 21, 97, 303, 685
BslI CCNNNNNNNGG 5 cut(s) 96, 145, 324, 575, 652
BsmAI GTCTC 4 cut(s) 251, 260, 280, 550
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 1 cut(s) 564
Bso31I GGTCTC 2 cut(s) 251, 260
Bsp1286I GDGCHC 2 cut(s) 106, 751
Bsp143I GATC 4 cut(s) 340, 352, 418, 583
BspACI CCGC 3 cut(s) 59, 62, 207
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 3 cut(s) 196, 301, 613
BspPI GGATC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 756
BspT107I GGYRCC 2 cut(s) 299, 611
BspTNI GGTCTC 2 cut(s) 251, 260
BsrI ACTGG 6 cut(s) 226, 318, 328, 403, 555, 646
BssECI CCNNGG 2 cut(s) 261, 784
BssMI GATC 4 cut(s) 340, 352, 418, 583
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 261, 784
Bst6I CTCTTC 2 cut(s) 227, 756
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 2 cut(s) 29, 624
BstF5I GGATG 3 cut(s) 38, 405, 681
BstKTI GATC 4 cut(s) 343, 355, 421, 586
BstMAI GTCTC 4 cut(s) 251, 260, 280, 550
BstMBI GATC 4 cut(s) 340, 352, 418, 583
BstMWI GCNNNNNNNGC 2 cut(s) 789, 798
BstNSI RCATGY 1 cut(s) 389
BstPAI GACNNNNGTC 2 cut(s) 272, 777
BstSCI CCNGG 2 cut(s) 19, 95
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 441
BsuRI GGCC 1 cut(s) 564
BtrI CACGTC 2 cut(s) 382, 779
BtsCI GGATG 3 cut(s) 38, 405, 681
BtsIMutI CAGTG 1 cut(s) 548
Cac8I GCNNGC 1 cut(s) 693
Csp6I GTAC 2 cut(s) 321, 612
CviAII CATG 4 cut(s) 145, 386, 534, 542
CviQI GTAC 2 cut(s) 321, 612
DdeI CTNAG 2 cut(s) 29, 624
DpnI GATC 4 cut(s) 342, 354, 420, 585
DpnII GATC 4 cut(s) 340, 352, 418, 583
DraIII CACNNNGTG 2 cut(s) 23, 479
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 227, 756
EarI CTCTTC 2 cut(s) 227, 756
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 261, 784
Eco24I GRGCYC 1 cut(s) 751
Eco31I GGTCTC 2 cut(s) 251, 260
Eco57I CTGAAG 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 261, 784
EcoT38I GRGCYC 1 cut(s) 751
ErhI CCWWGG 2 cut(s) 261, 784
FaeI CATG 4 cut(s) 148, 389, 537, 545
FatI CATG 4 cut(s) 144, 385, 533, 541
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 2 cut(s) 340, 418
Fnu4HI GCNGC 2 cut(s) 62, 689
FokI GGATG 3 cut(s) 25, 392, 668
FriOI GRGCYC 1 cut(s) 751
Fsp4HI GCNGC 2 cut(s) 62, 689
FspBI CTAG 1 cut(s) 764
GluI GCNGC 2 cut(s) 62, 689
HaeIII GGCC 1 cut(s) 564
HapII CCGG 4 cut(s) 21, 97, 303, 685
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 4 cut(s) 148, 389, 537, 545
HinfI GANTC 7 cut(s) 75, 149, 212, 314, 328, 492, 538
HpaII CCGG 4 cut(s) 21, 97, 303, 685
HphI GGTGA 9 cut(s) 27, 36, 73, 196, 413, 491, 518, 667, 701
Hpy188III TCNNGA 2 cut(s) 524, 825
Hpy99I CGWCG 2 cut(s) 443, 783
HpyAV CCTTC 4 cut(s) 94, 343, 693, 739
HpyCH4IV ACGT 4 cut(s) 381, 438, 778, 820
HpyCH4V TGCA 2 cut(s) 385, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 789, 798
HpyF3I CTNAG 2 cut(s) 29, 624
HpySE526I ACGT 4 cut(s) 381, 438, 778, 820
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 4 cut(s) 148, 389, 537, 545
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 2 cut(s) 340, 418
Kzo9I GATC 4 cut(s) 340, 352, 418, 583
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 4 cut(s) 141, 200, 523, 789
Lsp1109I GCAGC 1 cut(s) 700
MaeI CTAG 1 cut(s) 764
MaeII ACGT 4 cut(s) 381, 438, 778, 820
MaeIII GTNAC 3 cut(s) 401, 506, 816
MalI GATC 4 cut(s) 342, 354, 420, 585
MboI GATC 4 cut(s) 340, 352, 418, 583
MboII GAAGA 3 cut(s) 244, 446, 743
MhlI GDGCHC 2 cut(s) 106, 751
MluCI AATT 3 cut(s) 91, 237, 306
MlyI GAGTC 2 cut(s) 69, 143
MmeI TCCRAC 3 cut(s) 163, 330, 357
MnlI CCTC 9 cut(s) 52, 89, 187, 193, 238, 246, 384, 531, 715
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 414, 429
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 4 cut(s) 21, 97, 303, 685
MspR9I CCNGG 2 cut(s) 21, 97
Mva1269I GAATGC 1 cut(s) 792
MwoI GCNNNNNNNGC 2 cut(s) 789, 798
NciI CCSGG 2 cut(s) 21, 97
NdeI CATATG 1 cut(s) 345
NdeII GATC 4 cut(s) 340, 352, 418, 583
NlaIII CATG 4 cut(s) 148, 389, 537, 545
NlaIV GGNNCC 3 cut(s) 196, 301, 613
NmuCI GTSAC 3 cut(s) 401, 506, 816
NspI RCATGY 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 756
PctI GAATGC 1 cut(s) 792
PfeI GAWTC 5 cut(s) 212, 314, 328, 492, 538
PflMI CCANNNNNTGG 2 cut(s) 145, 652
PkrI GCNGC 2 cut(s) 63, 690
PleI GAGTC 2 cut(s) 69, 143
PpsI GAGTC 2 cut(s) 69, 143
PshAI GACNNNNGTC 2 cut(s) 272, 777
PspN4I GGNNCC 3 cut(s) 196, 301, 613
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 2 cut(s) 322, 613
RsaNI GTAC 2 cut(s) 321, 612
RseI CAYNNNNRTG 2 cut(s) 414, 429
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 62, 689
Sau3AI GATC 4 cut(s) 340, 352, 418, 583
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 2 cut(s) 69, 143
ScrFI CCNGG 2 cut(s) 21, 97
SduI GDGCHC 2 cut(s) 106, 751
SfcI CTRYAG 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 414, 429
Sse9I AATT 3 cut(s) 91, 237, 306
SsiI CCGC 3 cut(s) 59, 62, 207
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 2 cut(s) 19, 95
StyI CCWWGG 2 cut(s) 261, 784
TaiI ACGT 4 cut(s) 384, 441, 781, 823
TaqI TCGA 2 cut(s) 754, 803
TasI AATT 3 cut(s) 91, 237, 306
TatI WGTACW 1 cut(s) 320
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 5 cut(s) 212, 314, 328, 492, 538
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 555
TseFI GTSAC 3 cut(s) 401, 506, 816
TseI GCWGC 1 cut(s) 688
Tsp45I GTSAC 3 cut(s) 401, 506, 816
TspDTI ATGAA 3 cut(s) 447, 530, 543
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 555
Van91I CCANNNNNTGG 2 cut(s) 145, 652
XceI RCATGY 1 cut(s) 389
XspI CTAG 1 cut(s) 764
ZraI GACGTC 1 cut(s) 439
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.