Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001145.1

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Reverse (-)

37266 .. 39714

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001145.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggaggtatcagcaccacccggtgttctaacctcaccatcctcattctcatctccgccgctcaaacccagactcctcaccttcgccaattcccggtgggcacatctcccacgaaagcaccaccacctgaagctccaacacatggactctcactctcacggaatcatcactccctctgcctcttacaatggctccactctcaccaccgattccccttctggctctgggaagagaattggggaggttaagagggagaccaaggagaccaatgtctccgtcaaaataaaccttgacggcaccggaattgctgattccagtactgggattcccttccttgatcatatgttggatcaacttgcttcgcacgggttgttggacgtgcatgtgagggcagctggtgacacccacattgatgatcatcacacaaatgaagacgtcgctcttgctattggaacggctctgcttcaagcactgggtgatagaaaaggaatcaacaggtttggtgacttctctgctcctcttgatgaagcatggattcatgtctcactggatttatctggccgaccacatttgggttatgatcttcagatacccaccgagagagttggtacctatgacactcagctggtggaacattttttccagtctttggtgaatacttctggtatgacacttcatatccggcagcttgctggaaggaactctcaccatattattgaggcaaccttcaaagcatttgcaagggctcttcgacaagcactagaatatgacccacgtcgccttgggagcattccaagctcgaaaggtgtcctgtcacgttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

274

Amino Acids

29.9

Weight (kDa)

7.05

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
Acc65I	GGTACC	1 cut(s)	608
AccB1I	GGYRCC	2 cut(s)	296, 608
AccB7I	CCANNNNNTGG	2 cut(s)	142, 649
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	2 cut(s)	56, 59
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	149, 569
AcyI	GRCGYC	1 cut(s)	435
AdeI	CACNNNGTG	2 cut(s)	23, 476
AfaI	GTAC	2 cut(s)	319, 610
AfiI	CCNNNNNNNGG	5 cut(s)	93, 142, 321, 572, 649
AgsI	TTSAA	2 cut(s)	467, 730
AjiI	CACGTC	2 cut(s)	379, 776
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
AluBI	AGCT	5 cut(s)	133, 395, 625, 688, 798
AluI	AGCT	5 cut(s)	133, 395, 625, 688, 798
Alw26I	GTCTC	4 cut(s)	248, 257, 277, 547
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	2 cut(s)	392, 685
Asp718I	GGTACC	1 cut(s)	608
AsuC2I	CCSGG	2 cut(s)	21, 94
AsuHPI	GGTGA	8 cut(s)	27, 70, 193, 410, 488, 515, 664, 698
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	296, 608
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	404, 697
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	310, 471
BclI	TGATCA	2 cut(s)	337, 415
BcnI	CCSGG	2 cut(s)	21, 94
BcoDI	GTCTC	4 cut(s)	248, 257, 277, 547
BfaI	CTAG	1 cut(s)	761
BisI	GCNGC	3 cut(s)	59, 393, 686
BlsI	GCNGC	3 cut(s)	60, 394, 687
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	21, 94
BmgBI	CACGTC	2 cut(s)	379, 776
BmiI	GGNNCC	3 cut(s)	193, 298, 610
BmrFI	CCNGG	2 cut(s)	21, 94
BmrI	ACTGGG	2 cut(s)	330, 482
BmuI	ACTGGG	2 cut(s)	330, 482
BoxI	GACNNNNGTC	2 cut(s)	269, 774
BpiI	GAAGAC	1 cut(s)	438
BpuMI	CCSGG	2 cut(s)	21, 94
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	2 cut(s)	248, 257
BsaJI	CCNNGG	2 cut(s)	258, 781
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 176, 206
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 142, 321, 572, 649
Bse1I	ACTGG	5 cut(s)	315, 325, 477, 552, 643
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	258, 781
BseGI	GGATG	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	5 cut(s)	93, 142, 321, 572, 649
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	5 cut(s)	315, 325, 477, 552, 643
BseRI	GAGGAG	2 cut(s)	65, 507
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	404, 697
BshFI	GGCC	1 cut(s)	561
BshNI	GGYRCC	2 cut(s)	296, 608
BsiSI	CCGG	4 cut(s)	21, 94, 300, 682
BslI	CCNNNNNNNGG	5 cut(s)	93, 142, 321, 572, 649
BsmAI	GTCTC	4 cut(s)	248, 257, 277, 547
BsmI	GAATGC	1 cut(s)	789
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	2 cut(s)	248, 257
Bsp1286I	GDGCHC	2 cut(s)	103, 748
Bsp143I	GATC	4 cut(s)	337, 349, 415, 580
BspACI	CCGC	2 cut(s)	56, 59
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	3 cut(s)	193, 298, 610
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	2 cut(s)	296, 608
BspTNI	GGTCTC	2 cut(s)	248, 257
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	5 cut(s)	315, 325, 477, 552, 643
BssECI	CCNNGG	2 cut(s)	258, 781
BssMI	GATC	4 cut(s)	337, 349, 415, 580
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	258, 781
Bst6I	CTCTTC	2 cut(s)	224, 753
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	340, 352, 418, 583
BstMAI	GTCTC	4 cut(s)	248, 257, 277, 547
BstMBI	GATC	4 cut(s)	337, 349, 415, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	786, 795
BstNSI	RCATGY	1 cut(s)	386
BstPAI	GACNNNNGTC	2 cut(s)	269, 774
BstSCI	CCNGG	2 cut(s)	19, 92
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	404, 697
BstV2I	GAAGAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	561
BtrI	CACGTC	2 cut(s)	379, 776
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	470, 545
Cac8I	GCNNGC	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	318, 609
CviAII	CATG	4 cut(s)	142, 383, 531, 539
CviQI	GTAC	2 cut(s)	318, 609
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	4 cut(s)	339, 351, 417, 582
DpnII	GATC	4 cut(s)	337, 349, 415, 580
DraIII	CACNNNGTG	2 cut(s)	23, 476
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	224, 753
EarI	CTCTTC	2 cut(s)	224, 753
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	258, 781
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	2 cut(s)	248, 257
Eco57I	CTGAAG	2 cut(s)	149, 569
EcoT14I	CCWWGG	2 cut(s)	258, 781
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	258, 781
FaeI	CATG	4 cut(s)	145, 386, 534, 542
FatI	CATG	4 cut(s)	141, 382, 530, 538
FauNDI	CATATG	1 cut(s)	342
FbaI	TGATCA	2 cut(s)	337, 415
Fnu4HI	GCNGC	3 cut(s)	59, 393, 686
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	59, 393, 686
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	3 cut(s)	59, 393, 686
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	4 cut(s)	21, 94, 300, 682
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	145, 386, 534, 542
HinfI	GANTC	8 cut(s)	72, 146, 162, 209, 311, 325, 489, 535
HpaII	CCGG	4 cut(s)	21, 94, 300, 682
HphI	GGTGA	8 cut(s)	27, 70, 193, 410, 488, 515, 664, 698
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	2 cut(s)	521, 822
Hpy99I	CGWCG	2 cut(s)	440, 780
HpyAV	CCTTC	5 cut(s)	91, 225, 340, 690, 736
HpyCH4IV	ACGT	4 cut(s)	378, 435, 775, 817
HpyCH4V	TGCA	2 cut(s)	382, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	786, 795
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	4 cut(s)	378, 435, 775, 817
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	145, 386, 534, 542
KpnI	GGTACC	1 cut(s)	612
Ksp22I	TGATCA	2 cut(s)	337, 415
Kzo9I	GATC	4 cut(s)	337, 349, 415, 580
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	4 cut(s)	138, 197, 520, 786
Lsp1109I	GCAGC	2 cut(s)	404, 697
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	4 cut(s)	378, 435, 775, 817
MaeIII	GTNAC	3 cut(s)	398, 503, 813
MalI	GATC	4 cut(s)	339, 351, 417, 582
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	4 cut(s)	337, 349, 415, 580
MboII	GAAGA	4 cut(s)	241, 443, 575, 740
MhlI	GDGCHC	2 cut(s)	103, 748
MluCI	AATT	3 cut(s)	88, 234, 303
MlyI	GAGTC	2 cut(s)	66, 140
MmeI	TCCRAC	3 cut(s)	160, 327, 354
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	411, 426
MspA1I	CMGCKG	2 cut(s)	395, 625
MspI	CCGG	4 cut(s)	21, 94, 300, 682
MspR9I	CCNGG	2 cut(s)	21, 94
Mva1269I	GAATGC	1 cut(s)	789
MwoI	GCNNNNNNNGC	2 cut(s)	786, 795
NciI	CCSGG	2 cut(s)	21, 94
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	4 cut(s)	337, 349, 415, 580
NlaIII	CATG	4 cut(s)	145, 386, 534, 542
NlaIV	GGNNCC	3 cut(s)	193, 298, 610
NmuCI	GTSAC	3 cut(s)	398, 503, 813
NspI	RCATGY	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	1 cut(s)	789
PfeI	GAWTC	6 cut(s)	162, 209, 311, 325, 489, 535
PflMI	CCANNNNNTGG	2 cut(s)	142, 649
PkrI	GCNGC	3 cut(s)	60, 394, 687
PleI	GAGTC	2 cut(s)	66, 140
PpsI	GAGTC	2 cut(s)	66, 140
PshAI	GACNNNNGTC	2 cut(s)	269, 774
PspN4I	GGNNCC	3 cut(s)	193, 298, 610
PvuII	CAGCTG	2 cut(s)	395, 625
RsaI	GTAC	2 cut(s)	319, 610
RsaNI	GTAC	2 cut(s)	318, 609
RseI	CAYNNNNRTG	2 cut(s)	411, 426
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	59, 393, 686
Sau3AI	GATC	4 cut(s)	337, 349, 415, 580
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	66, 140
ScrFI	CCNGG	2 cut(s)	21, 94
SduI	GDGCHC	2 cut(s)	103, 748
SmiMI	CAYNNNNRTG	2 cut(s)	411, 426
Sse9I	AATT	3 cut(s)	88, 234, 303
SsiI	CCGC	2 cut(s)	56, 59
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	2 cut(s)	19, 92
StyI	CCWWGG	2 cut(s)	258, 781
TaiI	ACGT	4 cut(s)	381, 438, 778, 820
TaqI	TCGA	2 cut(s)	751, 800
TasI	AATT	3 cut(s)	88, 234, 303
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	6 cut(s)	162, 209, 311, 325, 489, 535
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	477, 552
TseFI	GTSAC	3 cut(s)	398, 503, 813
TseI	GCWGC	2 cut(s)	392, 685
Tsp45I	GTSAC	3 cut(s)	398, 503, 813
TspDTI	ATGAA	4 cut(s)	444, 527, 540, 665
TspGWI	ACGGA	2 cut(s)	174, 265
TspRI	CASTG	2 cut(s)	477, 552
Van91I	CCANNNNNTGG	2 cut(s)	142, 649
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	436
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.