RLG00000008002

Belongs to the imidazoleglycerol-phosphate dehydratase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007204
Physical Location & Seq
Forward (+)
24178886 .. 24181361
2476 bp
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UTR
Exon/CDS
Intron
RLM00000008002

Sequence Viewer

Length: 831 bp
ATGGAGGTATCAGCACCAGCCGGTGTTCTAAGCTCACCATCCTCTTTCTCATTCTCATCTCCGCCGCTAACACCCAGACTCCTCACCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACCTGAAGCTCCAACACATGGATTCTCACTCTCACGGAATCATCACCCCCTCCGCCTCTAACAATGGCTCCACTCTCACCGCCGATTCCCCTATTGGCTCTGGGAAGAGAATTGGGGAGGTTAAGAGGGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACTGGAATTGCTGATTCCAGTACTGGGATTCCTTTCCTTGATCATATGTTGGATCAACTTGCTTCGCATGGGTTGTTGGACGTGCATGTGAGGGCAACTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTCGCTCTTGCTATTGGAACGGCTTTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTGGGTTATGATCTACAGATACCCACCGAGAGAGTTGGTACCTATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTTCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCCAAAGGTGTCCTGTCACGTTCTTGA

Protein Analysis

277

Amino Acids

30.07

Weight (kDa)

6.83

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IGPD PF00475 109 - 252 2.1e-63 Imidazoleglycerol-phosphate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 2 cut(s) 148, 655
AciI CCGC 4 cut(s) 62, 65, 183, 210
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 2 cut(s) 325, 616
AfiI CCNNNNNNNGG 5 cut(s) 99, 148, 327, 578, 655
AgsI TTSAA 2 cut(s) 473, 736
AjiI CACGTC 2 cut(s) 385, 782
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 5 cut(s) 33, 139, 631, 694, 804
AluI AGCT 5 cut(s) 33, 139, 631, 694, 804
Alw26I GTCTC 4 cut(s) 254, 263, 283, 553
AlwI GGATC 1 cut(s) 363
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 691
Asp718I GGTACC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 9 cut(s) 27, 76, 166, 199, 416, 494, 521, 670, 704
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 703
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 316, 477
BclI TGATCA 2 cut(s) 343, 421
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 4 cut(s) 254, 263, 283, 553
BfaI CTAG 1 cut(s) 767
BfmI CTRYAG 1 cut(s) 590
BisI GCNGC 2 cut(s) 65, 692
BlsI GCNGC 2 cut(s) 66, 693
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 100
BmgBI CACGTC 2 cut(s) 385, 782
BmiI GGNNCC 2 cut(s) 199, 616
BmrFI CCNGG 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BoxI GACNNNNGTC 2 cut(s) 275, 780
BpuMI CCSGG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 254, 263
BsaJI CCNNGG 2 cut(s) 264, 787
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 182, 212
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 148, 327, 578, 655
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 6 cut(s) 310, 321, 331, 406, 558, 649
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 264, 787
BseGI GGATG 3 cut(s) 38, 408, 684
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 5 cut(s) 99, 148, 327, 578, 655
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 6 cut(s) 310, 321, 331, 406, 558, 649
BseRI GAGGAG 2 cut(s) 71, 513
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 703
BshFI GGCC 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 614
BsiSI CCGG 3 cut(s) 21, 100, 688
BslI CCNNNNNNNGG 5 cut(s) 99, 148, 327, 578, 655
BsmAI GTCTC 4 cut(s) 254, 263, 283, 553
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 1 cut(s) 567
Bso31I GGTCTC 2 cut(s) 254, 263
Bsp1286I GDGCHC 2 cut(s) 109, 754
Bsp143I GATC 4 cut(s) 343, 355, 421, 586
BspACI CCGC 4 cut(s) 62, 65, 183, 210
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 199, 616
BspPI GGATC 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 254, 263
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 6 cut(s) 310, 321, 331, 406, 558, 649
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 264, 787
BssMI GATC 4 cut(s) 343, 355, 421, 586
BssT1I CCWWGG 2 cut(s) 264, 787
Bst6I CTCTTC 2 cut(s) 230, 759
BstDEI CTNAG 2 cut(s) 29, 627
BstF5I GGATG 3 cut(s) 38, 408, 684
BstKTI GATC 4 cut(s) 346, 358, 424, 589
BstMAI GTCTC 4 cut(s) 254, 263, 283, 553
BstMBI GATC 4 cut(s) 343, 355, 421, 586
BstMWI GCNNNNNNNGC 2 cut(s) 792, 801
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 2 cut(s) 275, 780
BstSCI CCNGG 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 590
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 567
BtrI CACGTC 2 cut(s) 385, 782
BtsCI GGATG 3 cut(s) 38, 408, 684
BtsIMutI CAGTG 2 cut(s) 303, 551
Cfr10I RCCGGY 1 cut(s) 20
Csp6I GTAC 2 cut(s) 324, 615
CviAII CATG 5 cut(s) 148, 371, 389, 537, 545
CviQI GTAC 2 cut(s) 324, 615
DdeI CTNAG 2 cut(s) 29, 627
DpnI GATC 4 cut(s) 345, 357, 423, 588
DpnII GATC 4 cut(s) 343, 355, 421, 586
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 230, 759
EarI CTCTTC 2 cut(s) 230, 759
EciI GGCGGA 2 cut(s) 51, 172
Eco130I CCWWGG 2 cut(s) 264, 787
Eco24I GRGCYC 1 cut(s) 754
Eco31I GGTCTC 2 cut(s) 254, 263
Eco57I CTGAAG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 264, 787
EcoT38I GRGCYC 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 264, 787
FaeI CATG 5 cut(s) 151, 374, 392, 540, 548
FatI CATG 5 cut(s) 147, 370, 388, 536, 544
FauNDI CATATG 1 cut(s) 348
FbaI TGATCA 2 cut(s) 343, 421
Fnu4HI GCNGC 2 cut(s) 65, 692
FokI GGATG 3 cut(s) 25, 395, 671
FriOI GRGCYC 1 cut(s) 754
Fsp4HI GCNGC 2 cut(s) 65, 692
FspBI CTAG 1 cut(s) 767
GluI GCNGC 2 cut(s) 65, 692
HaeIII GGCC 1 cut(s) 567
HapII CCGG 3 cut(s) 21, 100, 688
Hin1II CATG 5 cut(s) 151, 374, 392, 540, 548
HinfI GANTC 8 cut(s) 78, 152, 168, 215, 317, 331, 495, 541
HpaII CCGG 3 cut(s) 21, 100, 688
HphI GGTGA 9 cut(s) 27, 76, 166, 199, 416, 494, 521, 670, 704
Hpy188III TCNNGA 3 cut(s) 527, 699, 828
Hpy99I CGWCG 1 cut(s) 786
HpyAV CCTTC 3 cut(s) 97, 696, 742
HpyCH4IV ACGT 3 cut(s) 384, 781, 823
HpyCH4V TGCA 2 cut(s) 388, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 792, 801
HpyF3I CTNAG 2 cut(s) 29, 627
HpySE526I ACGT 3 cut(s) 384, 781, 823
Hsp92II CATG 5 cut(s) 151, 374, 392, 540, 548
KpnI GGTACC 1 cut(s) 618
Ksp22I TGATCA 2 cut(s) 343, 421
Kzo9I GATC 4 cut(s) 343, 355, 421, 586
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 5 cut(s) 144, 203, 526, 792, 809
Lsp1109I GCAGC 1 cut(s) 703
MaeI CTAG 1 cut(s) 767
MaeII ACGT 3 cut(s) 384, 781, 823
MaeIII GTNAC 3 cut(s) 404, 509, 819
MalI GATC 4 cut(s) 345, 357, 423, 588
MboI GATC 4 cut(s) 343, 355, 421, 586
MboII GAAGA 3 cut(s) 247, 449, 746
MhlI GDGCHC 2 cut(s) 109, 754
MluCI AATT 3 cut(s) 94, 240, 309
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 3 cut(s) 166, 333, 360
MnlI CCTC 9 cut(s) 52, 92, 190, 196, 241, 249, 387, 534, 718
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 2 cut(s) 417, 432
MspA1I CMGCKG 1 cut(s) 631
MspI CCGG 3 cut(s) 21, 100, 688
MspR9I CCNGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 792, 801
NciI CCSGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 348
NdeII GATC 4 cut(s) 343, 355, 421, 586
NlaIII CATG 5 cut(s) 151, 374, 392, 540, 548
NlaIV GGNNCC 2 cut(s) 199, 616
NmuCI GTSAC 3 cut(s) 404, 509, 819
NspI RCATGY 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 759
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 7 cut(s) 152, 168, 215, 317, 331, 495, 541
PflMI CCANNNNNTGG 2 cut(s) 148, 655
PkrI GCNGC 2 cut(s) 66, 693
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PshAI GACNNNNGTC 2 cut(s) 275, 780
PspN4I GGNNCC 2 cut(s) 199, 616
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 2 cut(s) 325, 616
RsaNI GTAC 2 cut(s) 324, 615
RseI CAYNNNNRTG 2 cut(s) 417, 432
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 2 cut(s) 65, 692
Sau3AI GATC 4 cut(s) 343, 355, 421, 586
ScaI AGTACT 1 cut(s) 325
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 2 cut(s) 109, 754
SfcI CTRYAG 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 417, 432
Sse9I AATT 3 cut(s) 94, 240, 309
SsiI CCGC 4 cut(s) 62, 65, 183, 210
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 2 cut(s) 264, 787
TaiI ACGT 3 cut(s) 387, 784, 826
TaqI TCGA 1 cut(s) 757
TasI AATT 3 cut(s) 94, 240, 309
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 7 cut(s) 152, 168, 215, 317, 331, 495, 541
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 310, 558
TseFI GTSAC 3 cut(s) 404, 509, 819
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 3 cut(s) 404, 509, 819
TspDTI ATGAA 3 cut(s) 450, 533, 546
TspGWI ACGGA 2 cut(s) 180, 271
TspRI CASTG 2 cut(s) 310, 558
Van91I CCANNNNNTGG 2 cut(s) 148, 655
XceI RCATGY 1 cut(s) 392
XspI CTAG 1 cut(s) 767
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.