Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007204

Physical Location & Seq

Genomic Coordinates Reverse (-)

38845871 .. 38850208

Gene Structure 4338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG199400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGGTATCAGCACCACCCGGCGTTCTAAGCTCACCATCCTCACCTCTCTCCTTCTCATCTCCGCCGCTAAAACCCAGACTCCTCACCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACCTGAAGCTCCAGCACATTGACTCTCACTCTCACGGAATCATCACTCCCTCCGCCTCTTACAATGGCTCCACTCTCACCACCGATTCCCCTTCTGGCTCTGGGAAGAGAATTGGGGAGGTTAAGAGGGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACCGGAATTGCTGATTCCAGTACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCGCACGGGTTGTTGGACGTGCATGTGAGGGCAACTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTCGCTCTTGCTATTGGAACGGCTTTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTTGGTTATGATCTACAGATACCCACCGAGAGAGTTGGTACCTATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCTCTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAAGGTGTCCTGTCACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

277

Amino Acids

30.24

Weight (kDa)

7.05

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	110 - 253	3e-63	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22425 AT3G22425 AT4G14910 AT4G14910 AT4G14910
fragaria_vesca	FvH4_4g15510
malus_domestica	MD13G1192800.v1.1 MD16G1193500.v1.1
prunus_persica	Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1 Prupe.1G013300_v2.0.a1
pyrus_communis	pycom13g16510 pycom16g16320
rosa_chinensis	RchiOBHm_Chr4g0416251
rosa_laevigata	RLG00000008002
rosa_multiflora	Rmu_sc0001145.1_g000009 Rmu_sc0029602.1_g000001 Rmu_sc0029603.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360100
rosa_rugosa	Rorug04G0140300
rosa_samantha	Rh4AG202300 Rh4BG199700 Rh4CG213600 Rh4DG199400
rosa_wichuraiana	Rw4G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	2 cut(s)	305, 617
AccB7I	CCANNNNNTGG	2 cut(s)	581, 658
AciI	CCGC	3 cut(s)	65, 68, 186
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	328, 619
AfiI	CCNNNNNNNGG	4 cut(s)	102, 330, 581, 658
AgsI	TTSAA	2 cut(s)	476, 739
AjiI	CACGTC	2 cut(s)	388, 785
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	33, 142, 634, 697, 767, 807
AluI	AGCT	6 cut(s)	33, 142, 634, 697, 767, 807
Alw26I	GTCTC	4 cut(s)	257, 266, 286, 556
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	694
Asp718I	GGTACC	1 cut(s)	617
AsuC2I	CCSGG	2 cut(s)	21, 103
AsuHPI	GGTGA	9 cut(s)	27, 36, 79, 202, 419, 497, 524, 673, 707
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	2 cut(s)	305, 617
BanII	GRGCYC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	319, 480
BclI	TGATCA	2 cut(s)	346, 424
BcnI	CCSGG	2 cut(s)	21, 103
BcoDI	GTCTC	4 cut(s)	257, 266, 286, 556
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	1 cut(s)	593
BisI	GCNGC	2 cut(s)	68, 695
BlsI	GCNGC	2 cut(s)	69, 696
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	21, 103
BmgBI	CACGTC	2 cut(s)	388, 785
BmiI	GGNNCC	3 cut(s)	202, 307, 619
BmrFI	CCNGG	2 cut(s)	21, 103
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BoxI	GACNNNNGTC	2 cut(s)	278, 783
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	21, 103
BsaBI	GATNNNNATC	1 cut(s)	426
BsaI	GGTCTC	2 cut(s)	257, 266
BsaJI	CCNNGG	2 cut(s)	267, 790
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 185, 215
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 330, 581, 658
Bse1I	ACTGG	5 cut(s)	324, 334, 409, 561, 652
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	267, 790
BseGI	GGATG	3 cut(s)	38, 411, 687
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	4 cut(s)	102, 330, 581, 658
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	5 cut(s)	324, 334, 409, 561, 652
BseRI	GAGGAG	2 cut(s)	74, 516
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	706
BshFI	GGCC	1 cut(s)	570
BshNI	GGYRCC	2 cut(s)	305, 617
BsiSI	CCGG	4 cut(s)	21, 103, 309, 691
BslI	CCNNNNNNNGG	4 cut(s)	102, 330, 581, 658
BsmAI	GTCTC	4 cut(s)	257, 266, 286, 556
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	2 cut(s)	257, 266
Bsp1286I	GDGCHC	2 cut(s)	112, 757
Bsp143I	GATC	4 cut(s)	346, 358, 424, 589
BspACI	CCGC	3 cut(s)	65, 68, 186
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	202, 307, 619
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	762
BspT107I	GGYRCC	2 cut(s)	305, 617
BspTNI	GGTCTC	2 cut(s)	257, 266
BsrI	ACTGG	5 cut(s)	324, 334, 409, 561, 652
BssECI	CCNNGG	2 cut(s)	267, 790
BssMI	GATC	4 cut(s)	346, 358, 424, 589
BssT1I	CCWWGG	2 cut(s)	267, 790
Bst6I	CTCTTC	2 cut(s)	233, 762
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	2 cut(s)	29, 630
BstF5I	GGATG	3 cut(s)	38, 411, 687
BstKTI	GATC	4 cut(s)	349, 361, 427, 592
BstMAI	GTCTC	4 cut(s)	257, 266, 286, 556
BstMBI	GATC	4 cut(s)	346, 358, 424, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 795, 804
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	2 cut(s)	278, 783
BstSCI	CCNGG	2 cut(s)	19, 101
BstSFI	CTRYAG	1 cut(s)	593
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	706
BsuRI	GGCC	1 cut(s)	570
BtrI	CACGTC	2 cut(s)	388, 785
BtsCI	GGATG	3 cut(s)	38, 411, 687
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	327, 618
CviAII	CATG	3 cut(s)	392, 540, 548
CviQI	GTAC	2 cut(s)	327, 618
DdeI	CTNAG	2 cut(s)	29, 630
DpnI	GATC	4 cut(s)	348, 360, 426, 591
DpnII	GATC	4 cut(s)	346, 358, 424, 589
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	233, 762
EarI	CTCTTC	2 cut(s)	233, 762
EciI	GGCGGA	2 cut(s)	54, 175
Eco130I	CCWWGG	2 cut(s)	267, 790
Eco24I	GRGCYC	1 cut(s)	757
Eco31I	GGTCTC	2 cut(s)	257, 266
Eco57I	CTGAAG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	267, 790
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	2 cut(s)	267, 790
FaeI	CATG	3 cut(s)	395, 543, 551
FatI	CATG	3 cut(s)	391, 539, 547
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	2 cut(s)	346, 424
Fnu4HI	GCNGC	2 cut(s)	68, 695
FokI	GGATG	3 cut(s)	25, 398, 674
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	2 cut(s)	68, 695
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	2 cut(s)	68, 695
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	4 cut(s)	21, 103, 309, 691
Hin1II	CATG	3 cut(s)	395, 543, 551
HinfI	GANTC	8 cut(s)	81, 155, 171, 218, 320, 334, 498, 544
HpaII	CCGG	4 cut(s)	21, 103, 309, 691
HphI	GGTGA	9 cut(s)	27, 36, 79, 202, 419, 497, 524, 673, 707
Hpy188III	TCNNGA	3 cut(s)	530, 770, 831
Hpy99I	CGWCG	1 cut(s)	789
HpyAV	CCTTC	6 cut(s)	64, 100, 234, 349, 699, 745
HpyCH4IV	ACGT	3 cut(s)	387, 784, 826
HpyCH4V	TGCA	2 cut(s)	391, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 795, 804
HpyF3I	CTNAG	2 cut(s)	29, 630
HpySE526I	ACGT	3 cut(s)	387, 784, 826
Hsp92II	CATG	3 cut(s)	395, 543, 551
KpnI	GGTACC	1 cut(s)	621
Ksp22I	TGATCA	2 cut(s)	346, 424
Kzo9I	GATC	4 cut(s)	346, 358, 424, 589
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	4 cut(s)	147, 206, 529, 795
Lsp1109I	GCAGC	1 cut(s)	706
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	3 cut(s)	387, 784, 826
MaeIII	GTNAC	3 cut(s)	407, 512, 822
MalI	GATC	4 cut(s)	348, 360, 426, 591
MboI	GATC	4 cut(s)	346, 358, 424, 589
MboII	GAAGA	3 cut(s)	250, 452, 749
MhlI	GDGCHC	2 cut(s)	112, 757
MluCI	AATT	3 cut(s)	97, 243, 312
MlyI	GAGTC	2 cut(s)	75, 149
MmeI	TCCRAC	2 cut(s)	336, 363
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	420, 435
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	4 cut(s)	21, 103, 309, 691
MspR9I	CCNGG	2 cut(s)	21, 103
Mva1269I	GAATGC	1 cut(s)	798
MwoI	GCNNNNNNNGC	3 cut(s)	30, 795, 804
NciI	CCSGG	2 cut(s)	21, 103
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	4 cut(s)	346, 358, 424, 589
NlaIII	CATG	3 cut(s)	395, 543, 551
NlaIV	GGNNCC	3 cut(s)	202, 307, 619
NmuCI	GTSAC	3 cut(s)	407, 512, 822
NspI	RCATGY	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	6 cut(s)	171, 218, 320, 334, 498, 544
PflMI	CCANNNNNTGG	2 cut(s)	581, 658
PkrI	GCNGC	2 cut(s)	69, 696
PleI	GAGTC	2 cut(s)	75, 149
PpsI	GAGTC	2 cut(s)	75, 149
PshAI	GACNNNNGTC	2 cut(s)	278, 783
PspN4I	GGNNCC	3 cut(s)	202, 307, 619
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	328, 619
RsaNI	GTAC	2 cut(s)	327, 618
RseI	CAYNNNNRTG	2 cut(s)	420, 435
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	68, 695
Sau3AI	GATC	4 cut(s)	346, 358, 424, 589
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	2 cut(s)	75, 149
ScrFI	CCNGG	2 cut(s)	21, 103
SduI	GDGCHC	2 cut(s)	112, 757
SfcI	CTRYAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	2 cut(s)	420, 435
Sse9I	AATT	3 cut(s)	97, 243, 312
SsiI	CCGC	3 cut(s)	65, 68, 186
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	19, 101
StyI	CCWWGG	2 cut(s)	267, 790
TaiI	ACGT	3 cut(s)	390, 787, 829
TaqI	TCGA	2 cut(s)	760, 809
TasI	AATT	3 cut(s)	97, 243, 312
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	6 cut(s)	171, 218, 320, 334, 498, 544
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	3 cut(s)	407, 512, 822
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	3 cut(s)	407, 512, 822
TspDTI	ATGAA	3 cut(s)	453, 536, 549
TspGWI	ACGGA	2 cut(s)	183, 274
TspRI	CASTG	1 cut(s)	561
Van91I	CCANNNNNTGG	2 cut(s)	581, 658
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.