Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

8220682 .. 8226400

Gene Structure 5719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATCGGAGTTGACTCAAAATCTTCGTCGACGACTTTTATCGAAACAATGGTTGAATCGGAGAAAACGAAACACACTTGTCTCCGTCTCGAAATCTCCGGCGCCGATCCAATTTTCGTCAAAGGCACTTGGCATAATTCTCGTTTCGATATCTCCGTCACCGATGGTTCCTCCTCTTGGATTTGCAATGCGACGGAGGAGGAAGTGGCGGAGAGAGCAGCACAATGGGACCAGCCTGTGTCAGAGTATTTAAAGCTCGCCGAGCAATACTTAGGGTTTCAACAACCTAATTCGGTCTATAGTTTCTCCGATGCTCTAGAGGGATCTAAACGGCTCTCTTGGACGTTTGAGAAGGAAGGGACTAAACTTGAGTGGAGGTGGAAATGTAAACCATCAGATGATAGCAAGAAGATCACTGTTGGGATCTTGGATTTTCTTATGGAGGCTAACATAAGGCTAAGTGAAGAAGTGGTGAACAAGACGAGATCTTTTGAGAAGATGAGAAGTGAAGCTGAGAGATGTCTAGCGCAAGGTGAAAAACTCTGTGACGAAAAAACAGAGTTTGAGAGTGCAACTTATGCAAAGTTTCTTTCTGTTTTAAATGCAAAGAAGGCAAAACTGAGAGCACTAAGGGACAAAGAAGATTCAGTGAGAGTAGTTGAGGAGGAAGAGTCGACAGACAAAGCTGAAAGCTTTGAGAGTGGAAGAAGTGATGATGAGAAGAGCGAGGAAGAAGCCTCAAAAAAGGCAACAAGCAGCAAAGCCCGTGGCGGGAAGAGAGCTGCACGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

264

Amino Acids

29.85

Weight (kDa)

5.28

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XLF	PF09302	33 - 131	9.1e-08	XLF N-terminal domain
XRCC4	PF06632	37 - 132	1.6e-27	XRCC4 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	2 cut(s)	29, 674
AciI	CCGC	2 cut(s)	209, 771
AclWI	GGATC	3 cut(s)	101, 331, 431
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	177, 771
AgsI	TTSAA	2 cut(s)	56, 281
AluBI	AGCT	6 cut(s)	256, 512, 686, 693, 782, 792
AluI	AGCT	6 cut(s)	256, 512, 686, 693, 782, 792
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	86, 92
AlwI	GGATC	3 cut(s)	101, 331, 431
ApeKI	GCWGC	3 cut(s)	218, 756, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspLEI	GCGC	2 cut(s)	104, 529
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	151, 484, 545
AvaII	GGWCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	230, 768, 769
BccI	CCATC	2 cut(s)	158, 400
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BcoDI	GTCTC	2 cut(s)	86, 92
BfaI	CTAG	2 cut(s)	317, 524
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	3 cut(s)	219, 757, 783
BlsI	GCNGC	3 cut(s)	220, 758, 784
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	103, 169, 230
BmsI	GCATC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	766
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 771
Bse3DI	GCAATG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	766
BseLI	CCNNNNNNNGG	2 cut(s)	177, 771
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	504, 611
BseRI	GAGGAG	3 cut(s)	163, 212, 677
BseXI	GCAGC	3 cut(s)	230, 768, 769
BsgI	GTGCAG	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	3 cut(s)	242, 373, 647
BslI	CCNNNNNNNGG	2 cut(s)	177, 771
BsmAI	GTCTC	2 cut(s)	86, 92
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	3 cut(s)	242, 373, 647
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
BspACI	CCGC	2 cut(s)	209, 771
BspCNI	CTCAG	2 cut(s)	505, 612
BspLI	GGNNCC	3 cut(s)	103, 169, 230
BspPI	GGATC	3 cut(s)	101, 331, 431
BspQI	GCTCTTC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
BssNI	GRCGYC	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	3 cut(s)	663, 716, 770
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	271, 458, 513, 620, 629
BstDSI	CCRYGG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 529
BstKTI	GATC	6 cut(s)	6, 109, 326, 414, 426, 488
BstMAI	GTCTC	2 cut(s)	86, 92
BstMBI	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 262, 578, 611
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	230, 768, 769
BstX2I	RGATCY	3 cut(s)	323, 423, 485
BstYI	RGATCY	3 cut(s)	323, 423, 485
BtgI	CCRYGG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	414, 654
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	104, 529
Cfr13I	GGNCC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	748, 783
DdeI	CTNAG	5 cut(s)	271, 458, 513, 620, 629
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	6 cut(s)	5, 108, 325, 413, 425, 487
DpnII	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
DraI	TTTAAA	2 cut(s)	252, 600
Eam1104I	CTCTTC	3 cut(s)	663, 716, 770
EarI	CTCTTC	3 cut(s)	663, 716, 770
EciI	GGCGGA	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	151
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	92
FaiI	YATR	5 cut(s)	135, 300, 440, 452, 579
FaqI	GGGAC	3 cut(s)	242, 373, 647
FauI	CCCGC	1 cut(s)	764
FblI	GTMKAC	2 cut(s)	29, 674
Fnu4HI	GCNGC	3 cut(s)	219, 757, 783
Fsp4HI	GCNGC	3 cut(s)	219, 757, 783
FspBI	CTAG	2 cut(s)	317, 524
GlaI	GCGC	2 cut(s)	103, 528
GluI	GCNGC	3 cut(s)	219, 757, 783
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	2 cut(s)	104, 529
Hin1I	GRCGYC	1 cut(s)	102
Hin6I	GCGC	2 cut(s)	102, 527
HinP1I	GCGC	2 cut(s)	102, 527
HincII	GTYRAC	3 cut(s)	13, 30, 675
HindII	GTYRAC	3 cut(s)	13, 30, 675
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	4 cut(s)	14, 56, 644, 671
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	3 cut(s)	151, 484, 545
Hpy166II	GTNNAC	5 cut(s)	13, 30, 389, 475, 675
Hpy188I	TCNGA	5 cut(s)	8, 61, 244, 310, 397
Hpy188III	TCNNGA	2 cut(s)	89, 317
Hpy8I	GTNNAC	5 cut(s)	13, 30, 389, 475, 675
Hpy99I	CGWCG	3 cut(s)	31, 34, 196
HpyAV	CCTTC	3 cut(s)	346, 350, 604
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	5 cut(s)	186, 572, 581, 605, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 262, 578, 611
HpyF3I	CTNAG	5 cut(s)	271, 458, 513, 620, 629
HpySE526I	ACGT	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	102
HspAI	GCGC	2 cut(s)	102, 527
KasI	GGCGCC	1 cut(s)	101
Kzo9I	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
LguI	GCTCTTC	1 cut(s)	716
LpnPI	CCDG	3 cut(s)	112, 245, 249
Lsp1109I	GCAGC	3 cut(s)	230, 768, 769
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	317, 524
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	157, 545
MalI	GATC	6 cut(s)	5, 108, 325, 413, 425, 487
MboI	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
MflI	RGATCY	3 cut(s)	323, 423, 485
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	3 cut(s)	111, 136, 289
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	8, 680
MseI	TTAA	2 cut(s)	251, 599
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	215, 262, 578, 611
NarI	GGCGCC	1 cut(s)	102
NdeII	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
NlaIV	GGNNCC	3 cut(s)	103, 169, 230
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	157, 545
PciSI	GCTCTTC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 153
PfeI	GAWTC	2 cut(s)	56, 644
PkrI	GCNGC	3 cut(s)	220, 758, 784
PleI	GAGTC	2 cut(s)	8, 679
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	2 cut(s)	8, 679
PspN4I	GGNNCC	3 cut(s)	103, 169, 230
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	3 cut(s)	323, 423, 485
SalI	GTCGAC	2 cut(s)	28, 673
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	2 cut(s)	251, 599
SatI	GCNGC	3 cut(s)	219, 757, 783
Sau3AI	GATC	6 cut(s)	3, 106, 323, 411, 423, 485
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	8, 680
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	103
SgrDI	CGTCGACG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	111, 136, 289
SsiI	CCGC	2 cut(s)	209, 771
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	317, 524
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	5 cut(s)	29, 42, 90, 147, 674
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	111, 136, 289
TfiI	GAWTC	2 cut(s)	56, 644
Tru1I	TTAA	2 cut(s)	251, 599
Tru9I	TTAA	2 cut(s)	251, 599
TscAI	CASTG	2 cut(s)	421, 654
TseFI	GTSAC	2 cut(s)	157, 545
TseI	GCWGC	3 cut(s)	218, 756, 782
Tsp45I	GTSAC	2 cut(s)	157, 545
TspGWI	ACGGA	3 cut(s)	74, 145, 209
TspRI	CASTG	2 cut(s)	421, 654
VpaK11BI	GGWCC	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	316
XmiI	GTMKAC	2 cut(s)	29, 674
XspI	CTAG	2 cut(s)	317, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.