Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

45585578 .. 45586363

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGTTTGAATCCGCAGTTTATGCAAAGTTTCTTGGGGTCTTGAATGCAAAGAAGGCTAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGGCTGGGAAACTCACACTTGTCCATCCAAATTTCAGCATGTTTCTATCTAGTAGGACTCGAGGTCGAAAGAGGGCCTTGGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

10.55

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 101
AcsI	RAATTY	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	11, 46
AhdI	GACNNNNNGTC	1 cut(s)	162
AluBI	AGCT	2 cut(s)	73, 85
AluI	AGCT	2 cut(s)	73, 85
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	159
BccI	CCATC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	15, 101
BspANI	GGCC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 56
BstNSI	RCATGY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	174
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	5 cut(s)	59, 73, 85, 104, 176
CviKI_1	RGCY	5 cut(s)	59, 73, 85, 104, 176
DdeI	CTNAG	1 cut(s)	65
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	24, 140
FalI	AAGNNNNNCTT	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	11, 157
Hpy188III	TCNNGA	2 cut(s)	43, 77
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	26, 50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 56
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	1 cut(s)	90
MaeI	CTAG	1 cut(s)	150
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	155, 165
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	23, 56
NlaIII	CATG	1 cut(s)	142
NspI	RCATGY	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	159
SatI	GCNGC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	151
SetI	ASST	3 cut(s)	75, 87, 166
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	15, 101
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	2 cut(s)	160, 166
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.