Rh7AG348000

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002620
Physical Location & Seq
Forward (+)
44121181 .. 44126247
5067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG348000.1

Sequence Viewer

Length: 576 bp
ATGCCGACTTCATGGGTGATCAATAGGCTTCCTGATGGCGATCGGGGAGATCTCAATCAACCACACAAACCCATCTTCGTCAAAGGCACATGGTTCGAGTCCCGCTTCGACCTCTCCGACGGCCTCAAAGCCTGGGTCTGCCATGCCTCCGAAGAAGCGGTTAGAGACCGAGCCGCCCAGTGGGACCAGCCCGTATCGGAGTACGTCTCATTAGCCGAGCGCTATATAGGGTTTCAGCACTCTGATTCCGTCTACGGATTCACTGACGCTGGCAATGGCCACAGAAGGTTGTCATGGACTTTTGAGAAGGAAGGGACGAAGCTAGAATGGTGGTGGAAGTGTCAACCATCCCCTAACAGGAAGGAAACAACAGCTACAGTGTTGGATTTTCTGATGGATGCAAATGTTGGACTAAGTTTTCTTGGGGTCTTGAATTTAAAGAAGGCCAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGGCTGGGAAACTCACACTTGTCCATCCAAATTTCAGCATGTTTCTATCTAGTAGGTCTCGAGGTCGAAAGAGGGCATTGGAGAAATAG

Protein Analysis

191

Amino Acids

21.96

Weight (kDa)

9.39

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRCC4 PF06632 24 - 117 1e-22 XRCC4 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AciI CCGC 4 cut(s) 103, 158, 174, 488
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 433, 517
AfaI GTAC 1 cut(s) 203
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 180, 357
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 4 cut(s) 322, 374, 460, 472
AluI AGCT 4 cut(s) 322, 374, 460, 472
Alw26I GTCTC 3 cut(s) 159, 211, 549
Ama87I CYCGRG 1 cut(s) 546
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 3 cut(s) 121, 277, 444
ApoI RAATTY 2 cut(s) 433, 517
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 279
BccI CCATC 5 cut(s) 29, 80, 355, 388, 519
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 133
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 159, 211, 549
BfaI CTAG 2 cut(s) 323, 537
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 223
BglII AGATCT 1 cut(s) 49
BisI GCNGC 2 cut(s) 174, 489
BlsI GCNGC 2 cut(s) 175, 490
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BsaBI GATNNNNATC 2 cut(s) 39, 54
BsaI GGTCTC 2 cut(s) 159, 549
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 357
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 2 cut(s) 39, 54
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 347, 403, 511
BseJI GATNNNNATC 2 cut(s) 39, 54
BseLI CCNNNNNNNGG 2 cut(s) 180, 357
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 491
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 123, 279, 446
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 546
BslFI GGGAC 4 cut(s) 85, 197, 328, 479
BslI CCNNNNNNNGG 2 cut(s) 180, 357
BsmAI GTCTC 3 cut(s) 159, 211, 549
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 4 cut(s) 85, 197, 328, 479
BsnI GGCC 3 cut(s) 123, 279, 446
Bso31I GGTCTC 2 cut(s) 159, 549
BsoBI CYCGRG 1 cut(s) 546
Bsp143I GATC 3 cut(s) 18, 40, 49
BspACI CCGC 4 cut(s) 103, 158, 174, 488
BspANI GGCC 3 cut(s) 123, 279, 446
BspLI GGNNCC 1 cut(s) 185
BspTNI GGTCTC 2 cut(s) 159, 549
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 18, 40, 49
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 413, 452
BstF5I GGATG 3 cut(s) 347, 403, 511
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 3 cut(s) 21, 43, 52
BstMAI GTCTC 3 cut(s) 159, 211, 549
BstMBI GATC 3 cut(s) 18, 40, 49
BstMCI CGRYCG 1 cut(s) 43
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 3 cut(s) 123, 279, 446
BtsCI GGATG 3 cut(s) 347, 403, 511
BtsIMutI CAGTG 3 cut(s) 185, 261, 384
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 202
CviAII CATG 5 cut(s) 12, 90, 143, 294, 526
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 413, 452
DpnI GATC 3 cut(s) 20, 42, 51
DpnII GATC 3 cut(s) 18, 40, 49
DraI TTTAAA 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 277
Eco31I GGTCTC 2 cut(s) 159, 549
Eco47I GGWCC 1 cut(s) 184
Eco47III AGCGCT 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 5 cut(s) 15, 93, 146, 297, 529
FaiI YATR 7 cut(s) 13, 91, 144, 225, 227, 295, 527
FaqI GGGAC 4 cut(s) 85, 197, 328, 479
FatI CATG 5 cut(s) 11, 89, 142, 293, 525
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 174, 489
FokI GGATG 3 cut(s) 334, 410, 498
Fsp4HI GCNGC 2 cut(s) 174, 489
FspBI CTAG 2 cut(s) 323, 537
GlaI GCGC 1 cut(s) 221
GluI GCNGC 2 cut(s) 174, 489
GsaI CCCAGC 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 3 cut(s) 123, 279, 446
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 222
Hin1II CATG 5 cut(s) 15, 93, 146, 297, 529
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 3 cut(s) 98, 245, 258
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 253, 344
Hpy188I TCNGA 5 cut(s) 118, 151, 199, 244, 393
Hpy188III TCNNGA 4 cut(s) 32, 430, 464, 546
Hpy8I GTNNAC 2 cut(s) 253, 344
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 5 cut(s) 279, 301, 305, 355, 436
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 413, 452
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 15, 93, 146, 297, 529
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 40, 49
LpnPI CCDG 8 cut(s) 45, 118, 145, 191, 200, 255, 343, 477
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 323, 537
MaeII ACGT 1 cut(s) 204
MalI GATC 3 cut(s) 20, 42, 51
MboI GATC 3 cut(s) 18, 40, 49
MboII GAAGA 2 cut(s) 67, 164
MflI RGATCY 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 2 cut(s) 433, 517
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 3 cut(s) 141, 363, 388
MnlI CCTC 5 cut(s) 122, 134, 157, 542, 552
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
NdeII GATC 3 cut(s) 18, 40, 49
NlaIII CATG 5 cut(s) 15, 93, 146, 297, 529
NlaIV GGNNCC 1 cut(s) 185
NmeAIII GCCGAG 1 cut(s) 241
NspI RCATGY 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 245, 258
PkrI GCNGC 2 cut(s) 175, 490
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 49
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 2 cut(s) 174, 489
Sau3AI GATC 3 cut(s) 18, 40, 49
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 133
SetI ASST 9 cut(s) 114, 207, 290, 324, 376, 462, 474, 545, 553
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 2 cut(s) 433, 517
SsiI CCGC 4 cut(s) 103, 158, 174, 488
SspMI CTAG 2 cut(s) 323, 537
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 96, 108, 547, 553
TaqII GACCGA 1 cut(s) 183
TasI AATT 2 cut(s) 433, 517
TauI GCSGC 2 cut(s) 176, 491
TfiI GAWTC 2 cut(s) 245, 258
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 3 cut(s) 185, 268, 384
TspGWI ACGGA 2 cut(s) 238, 270
TspRI CASTG 3 cut(s) 185, 268, 384
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 433, 517
XceI RCATGY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 2 cut(s) 323, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.