Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

27301613 .. 27304751

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAAGTACCGTACATGAAAGGCCTCGAGCCATATGCACCCCGAAACTCCTTCTCAAACCCACCACCCTCCCAAACCCATCTCTCAAGATTTCCTTCCAAGCCCTCCAAAACCCCACCTTTTCCCGCCATTTCCCTCCACCGCCATCTCCGCCACACCGAAGAACCCAACTCCGGCGTAAACAAAATGGGTCCATCAAGTTTGGTCAATGTGGTCGGTGAGATCGAGAAGGGTACGGCCGACAGGAGCATTGGGAAGGTGAGATCAGGAACCGGGTCGGTTAGTGGGATTCGGTCTCGTAGAAGGCATGGAACCTTTGGAAATGAAGTTGCGACGTTGCTTGGTGGTGGTATTGTACCAGTTGCTTCGCTACAACATAAATTTCTTGGGGTCTTGAATTCAAAGAAGGCTAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGTCTGTGAAACTGCCACAAGAGGAAGAGAGCATAGACAAAACTGAAACTTATGTCGTTGATGATGAGAATAGTGATGTGGAAACCTTGAACGATCCTTCAGCTACCTCCAAGGATATTCCATCTAGCAGGTTTCGAGGTCGAAAGAGGGCATTGGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

204

Amino Acids

22.39

Weight (kDa)

9.9

Isoelectric Point (pI)

67.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	570
AciI	CCGC	3 cut(s)	126, 142, 151
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	380, 397
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	4 cut(s)	9, 14, 235, 357
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	397, 402, 541
AluBI	AGCT	3 cut(s)	424, 436, 554
AluI	AGCT	3 cut(s)	424, 436, 554
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	22, 237
ApoI	RAATTY	2 cut(s)	380, 397
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	230, 271
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	191
BccI	CCATC	4 cut(s)	87, 153, 202, 580
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	192, 271, 313
BmrFI	CCNGG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	24, 239
BsiEI	CGRYCG	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	174, 273
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	24, 239
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	222, 263, 544
BspACI	CCGC	3 cut(s)	126, 142, 151
BspANI	GGCC	2 cut(s)	24, 239
BspLI	GGNNCC	3 cut(s)	192, 271, 313
BspMI	ACCTGC	1 cut(s)	570
BspPI	GGATC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	222, 263, 544
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	225, 266, 547
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	222, 263, 544
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	24, 239
BveI	ACCTGC	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	4 cut(s)	8, 13, 234, 356
CviAII	CATG	2 cut(s)	16, 308
CviJI	RGCY	8 cut(s)	24, 31, 103, 239, 410, 424, 436, 554
CviKI_1	RGCY	8 cut(s)	24, 31, 103, 239, 410, 424, 436, 554
CviQI	GTAC	4 cut(s)	8, 13, 234, 356
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	3 cut(s)	224, 265, 546
DpnII	GATC	3 cut(s)	222, 263, 544
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	191
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	19, 311
FaiI	YATR	7 cut(s)	17, 34, 36, 309, 378, 485, 504
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	2 cut(s)	15, 307
FauI	CCCGC	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	34
FspBI	CTAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	24, 239
HapII	CCGG	2 cut(s)	174, 273
HgaI	GACGC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	19, 311
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	174, 273
HphI	GGTGA	2 cut(s)	230, 271
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	5 cut(s)	87, 226, 267, 394, 428
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	7 cut(s)	61, 105, 223, 250, 297, 400, 558
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	4, 38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	19, 311
Kzo9I	GATC	3 cut(s)	222, 263, 544
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	187, 229, 252, 286, 372, 565
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	335
MalI	GATC	3 cut(s)	224, 265, 546
MboI	GATC	3 cut(s)	222, 263, 544
MboII	GAAGA	2 cut(s)	173, 488
MluCI	AATT	2 cut(s)	380, 397
MnlI	CCTC	8 cut(s)	35, 79, 115, 146, 466, 568, 581, 591
MspI	CCGG	2 cut(s)	174, 273
MspR9I	CCNGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	3 cut(s)	222, 263, 544
NlaIII	CATG	2 cut(s)	19, 311
NlaIV	GGNNCC	3 cut(s)	192, 271, 313
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	192, 271, 313
PspPI	GGNCC	1 cut(s)	191
PspXI	VCTCGAGB	1 cut(s)	26
RsaI	GTAC	4 cut(s)	9, 14, 235, 357
RsaNI	GTAC	4 cut(s)	8, 13, 234, 356
Sau3AI	GATC	3 cut(s)	222, 263, 544
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	26, 85
SmoI	CTYRAG	2 cut(s)	26, 85
Sse9I	AATT	2 cut(s)	380, 397
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	126, 142, 151
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	4 cut(s)	27, 225, 586, 592
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	380, 397
TfiI	GAWTC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	32, 339
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	380, 397
XhoI	CTCGAG	1 cut(s)	26
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.