Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Reverse (-)

7293155 .. 7294000

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTGAAAGCGGAAGCTGAGAAGTGTCTAACACAGGGTGAAAAGATTGCCAATGAGAAGATGGAGTTTGAATCCGCAGTTTATGCAAAGTTTCTTGGGGTCTTGAATTCAAAGAAGGCTAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAACGGCTGGAAACTGCCACAAGAGGAAGAGTGCACAGACAAAACTGAAACTTATGTCAGTGATGATGAGAATAGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

9.85

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRCC4_CC	PF21924	2 - 45	2.4e-06	XRCC4 coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 75
AcsI	RAATTY	1 cut(s)	106
AdeI	CACNNNGTG	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	7, 71, 106, 111
AluBI	AGCT	3 cut(s)	17, 133, 145
AluI	AGCT	3 cut(s)	17, 133, 145
Alw21I	GWGCWC	1 cut(s)	193
Alw44I	GTGCAC	1 cut(s)	189
ApaLI	GTGCAC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	11, 75
BspCNI	CTCAG	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	18, 125
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	222
CviJI	RGCY	5 cut(s)	17, 119, 133, 145, 164
CviKI_1	RGCY	5 cut(s)	17, 119, 133, 145, 164
DdeI	CTNAG	2 cut(s)	18, 125
DraIII	CACNNNGTG	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	106
FaiI	YATR	2 cut(s)	84, 212
FaqI	GGGAC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	103, 137
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	86, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	18, 125
LpnPI	CCDG	2 cut(s)	20, 150
MboII	GAAGA	2 cut(s)	70, 196
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	3 cut(s)	19, 135, 147
SgeI	CNNG	8 cut(s)	47, 107, 115, 149, 154, 167, 177, 190
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	11, 75
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.