Rh5AG329500

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002620
Physical Location & Seq
Reverse (-)
50284114 .. 50286212
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG329500.1

Sequence Viewer

Length: 411 bp
ATGGCGATCGGGGAGATCTCAATCAACCACACAAACCCATCTTCATCAAGGGCACATGGTTCGAGTCTCGCTTCAACCTCTCCATCACCAAAGACCTCAACGCCTGGGTCTGCCATGCCTCCGAAGACGCAGTTAGAGACCGAGCCGCCCAGTGGGACCAGCCGGTTGAAAGTGGAAGCTGAGAAGTGTTTAACACAGAGTGAAAAGATTGCCAATGAGAAGATGGAGTTTGAATCCGCAGTTTATGCAAAGTTTCTTGGGGTCTTGAATTCAAAGAAGGCTAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGGCTGGGAAACTCACACTTGTCCATCCAAATTTCAGCATGTTTCTATCTAGTAGGTCTCGAGGTCGAAAGAGGGCATTGGAGAAATAG

Protein Analysis

136

Amino Acids

14.79

Weight (kDa)

10.0

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRCC4_CC PF21924 54 - 99 1.3e-06 XRCC4 coiled-coil
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 146, 237, 323
AcsI RAATTY 2 cut(s) 268, 352
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 5 cut(s) 75, 169, 233, 268, 273
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 3 cut(s) 179, 295, 307
AluI AGCT 3 cut(s) 179, 295, 307
Alw26I GTCTC 3 cut(s) 71, 131, 384
Ama87I CYCGRG 1 cut(s) 381
ApoI RAATTY 2 cut(s) 268, 352
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 131
BccI CCATC 4 cut(s) 46, 91, 217, 354
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 3 cut(s) 71, 131, 384
BfaI CTAG 1 cut(s) 372
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 146, 324
BlsI GCNGC 2 cut(s) 147, 325
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 2 cut(s) 131, 384
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 2 cut(s) 169, 314
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 3 cut(s) 71, 131, 384
BsmFI GGGAC 2 cut(s) 169, 314
Bso31I GGTCTC 2 cut(s) 131, 384
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 6, 15
BspACI CCGC 3 cut(s) 146, 237, 323
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 157
BspTNI GGTCTC 2 cut(s) 131, 384
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 2 cut(s) 6, 15
Bst2UI CCWGG 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 180, 287
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 2 cut(s) 9, 18
BstMAI GTCTC 3 cut(s) 71, 131, 384
BstMBI GATC 2 cut(s) 6, 15
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 156
CseI GACGC 1 cut(s) 136
CviAII CATG 3 cut(s) 56, 115, 361
CviJI RGCY 7 cut(s) 145, 162, 179, 281, 295, 307, 326
CviKI_1 RGCY 7 cut(s) 145, 162, 179, 281, 295, 307, 326
DdeI CTNAG 2 cut(s) 180, 287
DpnI GATC 2 cut(s) 8, 17
DpnII GATC 2 cut(s) 6, 15
DraIII CACNNNGTG 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 131, 384
Eco47I GGWCC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 59, 118, 364
FaiI YATR 4 cut(s) 57, 116, 246, 362
FaqI GGGAC 2 cut(s) 169, 314
FatI CATG 3 cut(s) 55, 114, 360
Fnu4HI GCNGC 2 cut(s) 146, 324
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 146, 324
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 146, 324
GsaI CCCAGC 1 cut(s) 330
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 136
Hin1II CATG 3 cut(s) 59, 118, 364
HinfI GANTC 2 cut(s) 64, 233
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 265, 299, 381
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 180, 287
Hsp92II CATG 3 cut(s) 59, 118, 364
Kzo9I GATC 2 cut(s) 6, 15
LpnPI CCDG 6 cut(s) 90, 117, 163, 172, 176, 312
MaeI CTAG 1 cut(s) 372
MalI GATC 2 cut(s) 8, 17
MboI GATC 2 cut(s) 6, 15
MboII GAAGA 3 cut(s) 33, 136, 232
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 268, 352
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 5 cut(s) 88, 106, 129, 377, 387
MseI TTAA 1 cut(s) 191
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 2 cut(s) 6, 15
NlaIII CATG 3 cut(s) 59, 118, 364
NlaIV GGNNCC 1 cut(s) 157
NspI RCATGY 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 381
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 147, 325
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 15
PvuI CGATCG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 146, 324
Sau3AI GATC 2 cut(s) 6, 15
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 55
SetI ASST 7 cut(s) 80, 98, 181, 297, 309, 380, 388
Sfr274I CTCGAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 2 cut(s) 268, 352
SsiI CCGC 3 cut(s) 146, 237, 323
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 3 cut(s) 62, 382, 388
TaqII GACCGA 1 cut(s) 155
TasI AATT 2 cut(s) 268, 352
TauI GCSGC 2 cut(s) 148, 326
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 268, 352
XceI RCATGY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 381
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.