Rh7CG365400

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002620
Physical Location & Seq
Forward (+)
45527256 .. 45532130
4875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG365400.1

Sequence Viewer

Length: 486 bp
ATGAAATGGTTTGCAATTTTTCACAAGAAATTTCTGTCTCCAAAAACAATCGCTTTGAAAAAGCTTCCTGATGGCGATCGGGGAGATCTCAATCAACCACACAAACCCATCTTCGTCAAAGGCACATGGTTCGAGTCCCGCTTCGACCTCTCCGACGGCCTCAAAGCCTGGGTCTGCCATGCCTCCGAAGAAGCGGTTAGAGACCGAGCCGCCCAGTGGGACCAGCCCGTATCGGAGTACGTCTCATTAGCCGAGCGCTATATAGGGTTTCAGCACTCTGATTCCGTCTACGGATTCACTGACGCTGGCAATGGCCACAGAAGGTTGTCATGGACTTTTGAGAAGGAAGGGACGAAGCTAGAATGGTGGTGGAAGTGTCAACCATCCCCTAACAGGAAGGAAACAACAGCTACAGTGTTGGATTTTCTGATGGATGCAAATGTTGGACTAAGTGAAGAAGTTGTGAGAAAAACTCAAATCATTTGA

Protein Analysis

161

Amino Acids

18.66

Weight (kDa)

7.79

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRCC4 PF06632 36 - 129 6.3e-23 XRCC4 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AciI CCGC 3 cut(s) 139, 194, 210
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 239
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 216, 393
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 3 cut(s) 64, 358, 410
AluI AGCT 3 cut(s) 64, 358, 410
Alw26I GTCTC 3 cut(s) 42, 195, 247
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 2 cut(s) 157, 313
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 315
BccI CCATC 4 cut(s) 65, 116, 391, 424
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 42, 195, 247
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 259
BglII AGATCT 1 cut(s) 85
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 169
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 208
BplI GAGNNNNNCTC 3 cut(s) 227, 259, 457
BsaBI GATNNNNATC 2 cut(s) 75, 90
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 393
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 2 cut(s) 75, 90
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 383, 439
BseJI GATNNNNATC 2 cut(s) 75, 90
BseLI CCNNNNNNNGG 2 cut(s) 216, 393
BseMI GCAATG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 2 cut(s) 159, 315
BsiEI CGRYCG 1 cut(s) 79
BslFI GGGAC 3 cut(s) 121, 233, 364
BslI CCNNNNNNNGG 2 cut(s) 216, 393
BsmAI GTCTC 3 cut(s) 42, 195, 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 3 cut(s) 121, 233, 364
BsnI GGCC 2 cut(s) 159, 315
Bso31I GGTCTC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 76, 85
BspACI CCGC 3 cut(s) 139, 194, 210
BspANI GGCC 2 cut(s) 159, 315
BspLI GGNNCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 76, 85
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 383, 439
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 79, 88
BstMAI GTCTC 3 cut(s) 42, 195, 247
BstMBI GATC 2 cut(s) 76, 85
BstMCI CGRYCG 1 cut(s) 79
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 159, 315
BtsCI GGATG 2 cut(s) 383, 439
BtsIMutI CAGTG 3 cut(s) 221, 297, 420
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 238
CviAII CATG 3 cut(s) 126, 179, 330
CviJI RGCY 9 cut(s) 64, 159, 167, 209, 226, 251, 315, 358, 410
CviKI_1 RGCY 9 cut(s) 64, 159, 167, 209, 226, 251, 315, 358, 410
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 449
DpnI GATC 2 cut(s) 78, 87
DpnII GATC 2 cut(s) 76, 85
EaeI YGGCCR 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 129, 182, 333
FaiI YATR 5 cut(s) 127, 180, 261, 263, 331
FaqI GGGAC 3 cut(s) 121, 233, 364
FatI CATG 3 cut(s) 125, 178, 329
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 370, 446
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 2 cut(s) 159, 315
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 258
Hin1II CATG 3 cut(s) 129, 182, 333
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 3 cut(s) 134, 281, 294
Hpy166II GTNNAC 2 cut(s) 289, 380
Hpy188I TCNGA 5 cut(s) 154, 187, 235, 280, 429
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 289, 380
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 315, 337, 341, 391
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 14, 437
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 129, 182, 333
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 76, 85
LpnPI CCDG 7 cut(s) 81, 154, 181, 227, 236, 291, 379
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 78, 87
MboI GATC 2 cut(s) 76, 85
MboII GAAGA 3 cut(s) 103, 200, 467
MflI RGATCY 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 2 cut(s) 15, 29
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 3 cut(s) 177, 399, 424
MnlI CCTC 3 cut(s) 158, 170, 193
Mox20I TGGCCA 1 cut(s) 315
MscI TGGCCA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
NdeII GATC 2 cut(s) 76, 85
NlaIII CATG 3 cut(s) 129, 182, 333
NlaIV GGNNCC 1 cut(s) 221
NmeAIII GCCGAG 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 2 cut(s) 281, 294
PkrI GCNGC 1 cut(s) 211
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 85
PvuI CGATCG 1 cut(s) 79
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 76, 85
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 169
SetI ASST 6 cut(s) 66, 150, 243, 326, 360, 412
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 220
Sse9I AATT 2 cut(s) 15, 29
SsiI CCGC 3 cut(s) 139, 194, 210
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 132, 144
TaqII GACCGA 1 cut(s) 219
TasI AATT 2 cut(s) 15, 29
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 2 cut(s) 281, 294
TscAI CASTG 3 cut(s) 221, 304, 420
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 274, 306
TspRI CASTG 3 cut(s) 221, 304, 420
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.