Rroxscaffold_4G00328020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002620
Physical Location & Seq
Forward (+)
60889042 .. 60889736
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328020.1

Sequence Viewer

Length: 333 bp
ATGGCGGTGGAAGTGTCAATAAGGAAACAACAGCTGCAGCTAGTGTTGGATTTTCTGATGGATGCAAATGTTGGGCTAAGTACTCAGTTTGTTAACCTCAGATATGCTGATTTATATTGCCTAGGAGCTGAATGTTTCAAAAAAAGCTTAAATATAGACTCCCAATTTTCCTGGGAAGAGGTGGCAAGATCAATCATAAAGGAGATTTTTTTGTTAGTAGTTGACGACTTCTCTTCATGTAACATGATACTTTGGAGAATATCTCTCACCAGTCATGGGGATAGTGATAAGAATCAATATACTAAGTTGGCTCCTGGTGTGGCAAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.46

Weight (kDa)

4.96

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 2 cut(s) 170, 313
AluBI AGCT 4 cut(s) 34, 40, 128, 147
AluI AGCT 4 cut(s) 34, 40, 128, 147
ApeKI GCWGC 2 cut(s) 34, 37
AspA2I CCTAGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 121
BbvI GCAGC 2 cut(s) 21, 49
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 172, 315
BfaI CTAG 2 cut(s) 41, 122
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 35, 38
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 2 cut(s) 36, 39
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 172, 315
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 172, 315
BmsI GCATC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 121, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 172, 315
BseDI CCNNGG 2 cut(s) 121, 171
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 98, 112
BseNI ACTGG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 21, 49
BslI CCNNNNNNNGG 1 cut(s) 276
Bsp143I GATC 1 cut(s) 188
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 97, 111
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 121, 171
BssMI GATC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 172, 315
Bst6I CTCTTC 2 cut(s) 171, 238
BstDEI CTNAG 4 cut(s) 77, 84, 98, 303
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 172, 315
BstSCI CCNGG 2 cut(s) 170, 313
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 21, 49
BtsCI GGATG 1 cut(s) 67
Csp6I GTAC 1 cut(s) 81
CviAII CATG 3 cut(s) 237, 244, 275
CviJI RGCY 6 cut(s) 34, 40, 76, 128, 147, 311
CviKI_1 RGCY 6 cut(s) 34, 40, 76, 128, 147, 311
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 4 cut(s) 77, 84, 98, 303
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 171, 238
EarI CTCTTC 2 cut(s) 171, 238
Eco130I CCWWGG 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 170, 313
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 240, 247, 278
FaiI YATR 8 cut(s) 105, 115, 155, 197, 238, 245, 276, 300
FatI CATG 3 cut(s) 236, 243, 274
Fnu4HI GCNGC 2 cut(s) 35, 38
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 35, 38
FspBI CTAG 2 cut(s) 41, 122
GluI GCNGC 2 cut(s) 35, 38
Hin1II CATG 3 cut(s) 240, 247, 278
HincII GTYRAC 2 cut(s) 94, 223
HindII GTYRAC 2 cut(s) 94, 223
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 2 cut(s) 158, 292
HpaI GTTAAC 1 cut(s) 94
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 94, 223
Hpy188I TCNGA 2 cut(s) 57, 101
Hpy8I GTNNAC 2 cut(s) 94, 223
HpyCH4V TGCA 2 cut(s) 37, 65
HpyF3I CTNAG 4 cut(s) 77, 84, 98, 303
Hsp92II CATG 3 cut(s) 240, 247, 278
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 125, 316
LpnPI CCDG 5 cut(s) 157, 184, 283, 300, 327
Lsp1109I GCAGC 2 cut(s) 21, 49
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 41, 122
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 2 cut(s) 188, 225
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 2 cut(s) 107, 172
MseI TTAA 3 cut(s) 93, 149, 331
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 172, 315
MvaI CCWGG 2 cut(s) 172, 315
NdeII GATC 1 cut(s) 188
NlaIII CATG 3 cut(s) 240, 247, 278
NlaIV GGNNCC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 36, 39
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 170, 313
PspGI CCWGG 2 cut(s) 170, 313
PspN4I GGNNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 93, 149, 331
SatI GCNGC 2 cut(s) 35, 38
Sau3AI GATC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 172, 315
SetI ASST 6 cut(s) 36, 42, 99, 130, 149, 183
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 41, 122
StyD4I CCNGG 2 cut(s) 170, 313
StyI CCWWGG 1 cut(s) 121
TasI AATT 1 cut(s) 164
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 93, 149, 331
Tru9I TTAA 3 cut(s) 93, 149, 331
TseI GCWGC 2 cut(s) 34, 37
TspDTI ATGAA 1 cut(s) 225
XmaJI CCTAGG 1 cut(s) 121
XspI CTAG 2 cut(s) 41, 122
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.