Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

2232555 .. 2234753

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G031500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGACCCCGAGCCCCAAGCACACGTGCTTAAAGCTCCAACTCAAAGAAGCTCAACAACCCATCTACGTTAAGGGCACGTGGTTCGAGTCCCGCTTCGACCTCTCCATCACCGACGGCCTCAACGCTTGGATCTGCCACGCGTCGGAAGAACAAGTGAGAGACCGAGCGGCTCAGTGGGATCAGCCGGTCTCGGAGTACGTGGCGTTGGCCGAGCGCTACCTAGGGTTTCAGCACCCAGACTCCGCCTACGGCTTCGCCGATGCCGGCGACGGCCACAAAAGATTGTCATGGACTTTTGAGAAGGAAGGGACCAAGCTAGAATGGCGGTGGAAATGTCAGCCATCGCCTAATAGTAAGCAAACCACAGCAGCAGTATTGGATTTTCTCATGGATGCAAATGTTGGGCTAAGTGAAGAAGTTGTGAGAAAAACTCAATCATTTGAGAGATTGAAAGTGGAAGCTGAGAAGTGTCTAGCACAGAGTGAGAAGCTTACCAATGAGAAGATAGAATTTGAATCCGCTATTTATGCAAAGTTTCTTGGGGTCTTGAATTCAAAAAAAGCTAAACTAAGAGAGCTTCGAGATAAGATTTCAAAACAAGAAATTGCTGGAAAACTGCCAGAAGAAGAGGAAGCGAGTTCAGACCAAACTGAACCTTTTGTCAGCAGTGATGAGAAAAGTGAGGATGAATCTTTGAAAGATCTTCCAGTTACCTCCAAGGATGTTCCGAGGACTAGGTCTCGAGGTCGGGGTCGAAAGAGGGCAGCGGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

260

Amino Acids

29.49

Weight (kDa)

5.78

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	170
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	94, 170, 246, 328, 522, 770
AclWI	GGATC	2 cut(s)	140, 189
AcoI	YGGCCR	2 cut(s)	210, 274
AcsI	RAATTY	2 cut(s)	512, 553
AcvI	CACGTG	2 cut(s)	27, 81
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	2 cut(s)	24, 141
AgsI	TTSAA	6 cut(s)	454, 518, 553, 558, 597, 700
AluBI	AGCT	7 cut(s)	37, 53, 319, 464, 493, 566, 580
AluI	AGCT	7 cut(s)	37, 53, 319, 464, 493, 566, 580
Alw26I	GTCTC	3 cut(s)	156, 196, 747
AlwI	GGATC	2 cut(s)	140, 189
Ama87I	CYCGRG	2 cut(s)	10, 744
Aor51HI	AGCGCT	1 cut(s)	218
AoxI	GGCC	3 cut(s)	118, 210, 274
ApeKI	GCWGC	2 cut(s)	371, 767
ApoI	RAATTY	2 cut(s)	512, 553
AspA2I	CCTAGG	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	2 cut(s)	10, 744
AvaII	GGWCC	1 cut(s)	312
AvrII	CCTAGG	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	17
BbrPI	CACGTG	2 cut(s)	27, 81
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	71, 116, 352
BceAI	ACGGC	3 cut(s)	133, 268, 289
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcoDI	GTCTC	3 cut(s)	156, 196, 747
BfaI	CTAG	4 cut(s)	224, 320, 476, 738
BfoI	RGCGCY	1 cut(s)	220
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	3 cut(s)	171, 372, 768
BlnI	CCTAGG	1 cut(s)	223
BlsI	GCNGC	3 cut(s)	172, 373, 769
Bme18I	GGWCC	1 cut(s)	312
BmeT110I	CYCGRG	2 cut(s)	10, 744
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	2 cut(s)	253, 385
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BsaAI	YACGTR	3 cut(s)	27, 81, 202
BsaI	GGTCTC	3 cut(s)	156, 196, 747
BsaJI	CCNNGG	3 cut(s)	223, 720, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	2 cut(s)	187, 266
Bse1I	ACTGG	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	223, 720, 731
BseGI	GGATG	3 cut(s)	400, 694, 730
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	188, 456
BseNI	ACTGG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	120, 212, 276
BsiHKCI	CYCGRG	2 cut(s)	10, 744
BsiSI	CCGG	2 cut(s)	188, 267
BslFI	GGGAC	2 cut(s)	76, 325
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	156, 196, 747
BsmFI	GGGAC	2 cut(s)	76, 325
BsnI	GGCC	3 cut(s)	120, 212, 276
Bso31I	GGTCTC	3 cut(s)	156, 196, 747
BsoBI	CYCGRG	2 cut(s)	10, 744
Bsp1286I	GDGCHC	2 cut(s)	17, 80
Bsp143I	GATC	3 cut(s)	132, 181, 703
BspACI	CCGC	6 cut(s)	94, 170, 246, 328, 522, 770
BspANI	GGCC	3 cut(s)	120, 212, 276
BspCNI	CTCAG	2 cut(s)	187, 457
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	140, 189
BspTNI	GGTCTC	3 cut(s)	156, 196, 747
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	187, 266
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	2 cut(s)	187, 266
BssECI	CCNNGG	3 cut(s)	223, 720, 731
BssMI	GATC	3 cut(s)	132, 181, 703
BssT1I	CCWWGG	2 cut(s)	223, 720
Bst6I	CTCTTC	1 cut(s)	624
BstBAI	YACGTR	3 cut(s)	27, 81, 202
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	4 cut(s)	174, 410, 465, 572
BstF5I	GGATG	3 cut(s)	400, 694, 730
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	135, 184, 706
BstMAI	GTCTC	3 cut(s)	156, 196, 747
BstMBI	GATC	3 cut(s)	132, 181, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 530
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	132, 703
BstYI	RGATCY	2 cut(s)	132, 703
BsuRI	GGCC	3 cut(s)	120, 212, 276
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	400, 694, 730
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	182, 676
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	2 cut(s)	187, 266
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	291, 391
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	4 cut(s)	174, 410, 465, 572
DpnI	GATC	3 cut(s)	134, 183, 705
DpnII	GATC	3 cut(s)	132, 181, 703
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	210, 274
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	223, 720
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	3 cut(s)	156, 196, 747
Eco47I	GGWCC	1 cut(s)	312
Eco47III	AGCGCT	1 cut(s)	218
Eco72I	CACGTG	2 cut(s)	27, 81
Eco88I	CYCGRG	2 cut(s)	10, 744
EcoRI	GAATTC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	223, 720
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	223, 720
FaeI	CATG	2 cut(s)	294, 394
FaiI	YATR	3 cut(s)	292, 392, 531
FaqI	GGGAC	2 cut(s)	76, 325
FatI	CATG	2 cut(s)	290, 390
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	171, 372, 768
FokI	GGATG	3 cut(s)	407, 701, 737
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	171, 372, 768
FspBI	CTAG	4 cut(s)	224, 320, 476, 738
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	171, 372, 768
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	120, 212, 276
HapII	CCGG	2 cut(s)	188, 267
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	294, 394
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	4 cut(s)	89, 242, 518, 692
HpaII	CCGG	2 cut(s)	188, 267
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	148, 196, 646, 732
Hpy188III	TCNNGA	3 cut(s)	550, 584, 744
Hpy99I	CGWCG	3 cut(s)	119, 148, 275
HpyAV	CCTTC	2 cut(s)	298, 302
HpyCH4IV	ACGT	4 cut(s)	26, 69, 80, 201
HpyCH4V	TGCA	2 cut(s)	398, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 530
HpyF3I	CTNAG	4 cut(s)	174, 410, 465, 572
HpySE526I	ACGT	4 cut(s)	26, 69, 80, 201
Hsp92II	CATG	2 cut(s)	294, 394
HspAI	GCGC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	132, 181, 703
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	201, 252, 280, 597, 636, 723
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	253, 385
MaeI	CTAG	4 cut(s)	224, 320, 476, 738
MaeII	ACGT	4 cut(s)	26, 69, 80, 201
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	3 cut(s)	134, 183, 705
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	3 cut(s)	132, 181, 703
MboII	GAAGA	6 cut(s)	161, 428, 517, 638, 641, 698
MflI	RGATCY	2 cut(s)	132, 703
MhlI	GDGCHC	2 cut(s)	17, 80
MluCI	AATT	4 cut(s)	512, 553, 606, 775
MluI	ACGCGT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	98, 236
MmeI	TCCRAC	2 cut(s)	64, 126
MnlI	CCTC	8 cut(s)	113, 131, 625, 679, 726, 727, 740, 756
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	2 cut(s)	32, 72
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	2 cut(s)	188, 267
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	325, 530
NaeI	GCCGGC	1 cut(s)	268
NdeII	GATC	3 cut(s)	132, 181, 703
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	294, 394
NlaIV	GGNNCC	1 cut(s)	313
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	518, 692
PflFI	GACNNNGTC	1 cut(s)	739
PkrI	GCNGC	3 cut(s)	172, 373, 769
PleI	GAGTC	2 cut(s)	97, 236
PmaCI	CACGTG	2 cut(s)	27, 81
PmlI	CACGTG	2 cut(s)	27, 81
PpsI	GAGTC	2 cut(s)	97, 236
Ppu21I	YACGTR	3 cut(s)	27, 81, 202
PspCI	CACGTG	2 cut(s)	27, 81
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	132, 703
PsyI	GACNNNGTC	1 cut(s)	739
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	32, 72
SatI	GCNGC	3 cut(s)	171, 372, 768
Sau3AI	GATC	3 cut(s)	132, 181, 703
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	2 cut(s)	98, 236
SduI	GDGCHC	2 cut(s)	17, 80
SfaNI	GCATC	2 cut(s)	253, 385
Sfr274I	CTCGAG	1 cut(s)	744
SinI	GGWCC	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	4 cut(s)	512, 553, 606, 775
SsiI	CCGC	6 cut(s)	94, 170, 246, 328, 522, 770
SspMI	CTAG	4 cut(s)	224, 320, 476, 738
StyI	CCWWGG	2 cut(s)	223, 720
TaiI	ACGT	4 cut(s)	29, 72, 83, 204
TaqI	TCGA	5 cut(s)	87, 99, 583, 745, 757
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	4 cut(s)	512, 553, 606, 775
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	518, 692
Tru1I	TTAA	2 cut(s)	32, 72
Tru9I	TTAA	2 cut(s)	32, 72
TscAI	CASTG	2 cut(s)	182, 676
TseI	GCWGC	2 cut(s)	371, 767
TspDTI	ATGAA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	182, 676
Tth111I	GACNNNGTC	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	2 cut(s)	512, 553
XhoI	CTCGAG	1 cut(s)	744
XmaJI	CCTAGG	1 cut(s)	223
XspI	CTAG	4 cut(s)	224, 320, 476, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.