Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

5955952 .. 5958771

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07190.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGGATGATGGGTCAGTAGTCCCCAGACAGTCGTGCTTAAAGCTGGAACCCAAAGAATCCCAACCCATCTTCGTCAAGGGCACATGGTTCCACTCCCGCTTCGACCTCTCCATCACCGACGGCCTCAACGCCTGGGTCTGCCACGCCTCCGAGGACGCCGTTAGAGACCGAGCCGCCCAGTGGGACCAGCCGGTTCCCGACTACGTCTCATTAGCCGAGCGCTATTTAGGGTTTCAGCACCCCGATTCCGTCTACAAATTCACTGATGCCGGCGACGGCCACAAAAGATTGTCGTGGACTTTTGACAAGGAAGGGACCAAGCTAGAATGGCGGTGGAAGTGTGAACCATCGCCGAACAGTAAGGAAACCACAGCAGCGGTGCTCGATTTTCTGATGGATGCCAATGTTGGGCTAAGTGAAGAAGTTGTGAGAAAAACTCAATCATTTGAAAGGTTGAAAGTGGAAGCTGAGATGTGTCTAATACAGAGTGAAAGGATTGCCAATGAGAAGATCGAGTTTGAATCCGCAGTTTATGCAAAGTTTCTTGGGGTCTTGAATTCAAAGAAGACGAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGGCTGGGAAACTGCCAGAACAAGAAGAAGAGAGCACAGACAAAACTGAAACTTATGTAAGTGATGATGAGAATAGTGAGGTAGATTCCTTGAAAGATCCTCCACCAACTTCCAAGGATATTCCATCTAGTAGGTCTCAAGGTCGAAAGAGGGCATTCCAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

260

Amino Acids

29.56

Weight (kDa)

5.19

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XLF	PF09302	16 - 116	6.7e-06	XLF N-terminal domain
XRCC4	PF06632	23 - 117	6.2e-27	XRCC4 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	6 cut(s)	100, 177, 334, 380, 528, 614
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	260, 559
AcyI	GRCGYC	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	183, 411
AgsI	TTSAA	6 cut(s)	452, 460, 524, 559, 564, 706
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	5 cut(s)	46, 325, 470, 586, 598
AluI	AGCT	5 cut(s)	46, 325, 470, 586, 598
Alw21I	GWGCWC	2 cut(s)	387, 650
Alw26I	GTCTC	3 cut(s)	162, 214, 753
AlwI	GGATC	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	2 cut(s)	124, 280
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	260, 559
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	187, 318
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	187, 318
BaeGI	GKGCMC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	387, 650
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	6 cut(s)	5, 77, 122, 358, 391, 745
BceAI	ACGGC	3 cut(s)	139, 146, 295
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	162, 214, 753
BfaI	CTAG	2 cut(s)	326, 741
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	3 cut(s)	177, 378, 615
BlsI	GCNGC	3 cut(s)	178, 379, 616
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	187, 318
BmgT120I	GGNCC	2 cut(s)	187, 318
BmiI	GGNNCC	5 cut(s)	51, 92, 188, 198, 319
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	259, 391
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	162, 753
BsaJI	CCNNGG	3 cut(s)	135, 153, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 411
Bse118I	RCCGGY	2 cut(s)	193, 272
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	3 cut(s)	135, 153, 726
BseGI	GGATG	2 cut(s)	13, 406
BseLI	CCNNNNNNNGG	2 cut(s)	183, 411
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	126, 282
BsiHKAI	GWGCWC	2 cut(s)	387, 650
BsiSI	CCGG	2 cut(s)	194, 273
BslFI	GGGAC	4 cut(s)	8, 200, 331, 605
BslI	CCNNNNNNNGG	2 cut(s)	183, 411
BsmAI	GTCTC	3 cut(s)	162, 214, 753
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	4 cut(s)	8, 200, 331, 605
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	126, 282
Bso31I	GGTCTC	2 cut(s)	162, 753
Bsp1286I	GDGCHC	3 cut(s)	86, 387, 650
Bsp143I	GATC	2 cut(s)	513, 709
BspACI	CCGC	6 cut(s)	100, 177, 334, 380, 528, 614
BspANI	GGCC	2 cut(s)	126, 282
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	5 cut(s)	51, 92, 188, 198, 319
BspPI	GGATC	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	162, 753
BsrFI	RCCGGY	2 cut(s)	193, 272
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	2 cut(s)	193, 272
BssECI	CCNNGG	3 cut(s)	135, 153, 726
BssMI	GATC	2 cut(s)	513, 709
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	33, 362
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	416, 471, 578
BstF5I	GGATG	2 cut(s)	13, 406
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	516, 712
BstMAI	GTCTC	3 cut(s)	162, 214, 753
BstMBI	GATC	2 cut(s)	513, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 536
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	126, 282
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	13, 406
BtsIMutI	CAGTG	2 cut(s)	188, 264
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	2 cut(s)	193, 272
Cfr13I	GGNCC	2 cut(s)	187, 318
CseI	GACGC	1 cut(s)	167
CviAII	CATG	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	416, 471, 578
DpnI	GATC	2 cut(s)	515, 711
DpnII	GATC	2 cut(s)	513, 709
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	726
Eco31I	GGTCTC	2 cut(s)	162, 753
Eco47I	GGWCC	2 cut(s)	187, 318
Eco47III	AGCGCT	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	90
FaiI	YATR	3 cut(s)	88, 537, 669
FaqI	GGGAC	4 cut(s)	8, 200, 331, 605
FatI	CATG	1 cut(s)	86
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	177, 378, 615
FokI	GGATG	2 cut(s)	20, 413
Fsp4HI	GCNGC	3 cut(s)	177, 378, 615
FspBI	CTAG	2 cut(s)	326, 741
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	177, 378, 615
GsaI	CCCAGC	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	126, 282
HapII	CCGG	2 cut(s)	194, 273
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	4 cut(s)	59, 248, 524, 698
HpaII	CCGG	2 cut(s)	194, 273
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	256, 300, 347
Hpy188I	TCNGA	2 cut(s)	154, 396
Hpy188III	TCNNGA	4 cut(s)	200, 556, 590, 772
Hpy8I	GTNNAC	3 cut(s)	256, 300, 347
Hpy99I	CGWCG	2 cut(s)	125, 281
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	33, 362
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 536
HpyF3I	CTNAG	3 cut(s)	416, 471, 578
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	513, 709
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	2 cut(s)	259, 391
MaeI	CTAG	2 cut(s)	326, 741
MaeII	ACGT	1 cut(s)	207
MalI	GATC	2 cut(s)	515, 711
MboI	GATC	2 cut(s)	513, 709
MboII	GAAGA	6 cut(s)	64, 434, 523, 580, 650, 653
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	86, 387, 650
MluCI	AATT	2 cut(s)	260, 559
MnlI	CCTC	7 cut(s)	119, 137, 148, 160, 685, 723, 756
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	194, 273
MspR9I	CCNGG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	331, 536
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	513, 709
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	5 cut(s)	51, 92, 188, 198, 319
NmeAIII	GCCGAG	1 cut(s)	244
PctI	GAATGC	1 cut(s)	767
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	59, 248, 524, 698
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	178, 379, 616
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	5 cut(s)	51, 92, 188, 198, 319
PspPI	GGNCC	2 cut(s)	187, 318
PsuI	RGATCY	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	3 cut(s)	177, 378, 615
Sau3AI	GATC	2 cut(s)	513, 709
Sau96I	GGNCC	2 cut(s)	187, 318
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	86, 387, 650
SfaNI	GCATC	2 cut(s)	259, 391
SinI	GGWCC	2 cut(s)	187, 318
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	2 cut(s)	260, 559
SsiI	CCGC	6 cut(s)	100, 177, 334, 380, 528, 614
SspMI	CTAG	2 cut(s)	326, 741
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	33, 362
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	105, 387, 516, 757
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	260, 559
TauI	GCSGC	2 cut(s)	179, 617
TfiI	GAWTC	4 cut(s)	59, 248, 524, 698
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	2 cut(s)	188, 271
TseI	GCWGC	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	188, 271
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	187, 318
XapI	RAATTY	2 cut(s)	260, 559
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	326, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.