Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003452.1

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Forward (+)

59200 .. 60490

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003452.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgcaagtaggtttcctagttgaatacaaacttcttttctgcgattcttctacactcttccggaaccttcttgagcttcctgatggcgatcggggagatctcaatcaaccacacaaacccatcttcgtcaagggcacatggttcgagtcccgcttcgacctctccataaccgacggcctcaacgcctgggtctgtcatgcatccgaagacgcgcactctgattcagtctacagattcactgacactggcaatggccacataaggttgtcatggacttttgagaaggaagggacgaagctagaatggcagtggaagtatcaaccatcccttaatagtaaggaaacaacagctacaatgttggattttcttatggatgcaaatgttgggctaagtgtaagagcaagttcaccgggcttgttcttgcccgggcaccacgtcaaaaggaggcagggggaggattttcggactgttcatccttccaccggagctggggcaagactactgggggaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

171

Amino Acids

19.3

Weight (kDa)

5.95

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	212
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	482, 489
AgsI	TTSAA	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	76, 298, 350, 488
AluI	AGCT	4 cut(s)	76, 298, 350, 488
Ama87I	CYCGRG	1 cut(s)	425
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	3 cut(s)	175, 253, 510
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	3 cut(s)	411, 426, 427
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	425
BaeGI	GKGCMC	2 cut(s)	137, 432
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	213
BccI	CCATC	3 cut(s)	77, 128, 331
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	3 cut(s)	411, 426, 427
BfaI	CTAG	2 cut(s)	17, 299
BfmI	CTRYAG	1 cut(s)	229
BglII	AGATCT	1 cut(s)	97
Bme1390I	CCNGG	4 cut(s)	187, 411, 426, 427
BmeT110I	CYCGRG	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	65, 431
BmrFI	CCNGG	4 cut(s)	187, 411, 426, 427
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	209, 364
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	3 cut(s)	411, 426, 427
BsaBI	GATNNNNATC	2 cut(s)	87, 102
BsaJI	CCNNGG	2 cut(s)	186, 425
BsaWI	WCCGGW	2 cut(s)	60, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 489
Bse1I	ACTGG	2 cut(s)	250, 507
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	2 cut(s)	87, 102
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	186, 425
BseGI	GGATG	4 cut(s)	200, 323, 379, 472
BseJI	GATNNNNATC	2 cut(s)	87, 102
BseLI	CCNNNNNNNGG	2 cut(s)	482, 489
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	250, 507
BseSI	GKGCMC	2 cut(s)	137, 432
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	177, 255, 512
BshNI	GGYRCC	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	4 cut(s)	61, 410, 426, 483
BslFI	GGGAC	2 cut(s)	133, 304
BslI	CCNNNNNNNGG	2 cut(s)	482, 489
BsmFI	GGGAC	2 cut(s)	133, 304
BsnI	GGCC	3 cut(s)	177, 255, 512
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	137, 432
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	88, 97
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	177, 255, 512
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	65, 431
BspT107I	GGYRCC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	250, 507
BssECI	CCNNGG	2 cut(s)	186, 425
BssMI	GATC	2 cut(s)	88, 97
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	4 cut(s)	200, 323, 379, 472
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	91, 100
BstMBI	GATC	2 cut(s)	88, 97
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	4 cut(s)	185, 409, 424, 425
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	2 cut(s)	137, 432
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	177, 255, 512
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	4 cut(s)	200, 323, 379, 472
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	3 cut(s)	237, 243, 314
CfoI	GCGC	1 cut(s)	214
Cfr9I	CCCGGG	1 cut(s)	425
CseI	GACGC	1 cut(s)	218
CviAII	CATG	3 cut(s)	138, 197, 270
CviJI	RGCY	9 cut(s)	76, 177, 255, 298, 350, 388, 414, 488, 512
CviKI_1	RGCY	9 cut(s)	76, 177, 255, 298, 350, 388, 414, 488, 512
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	90, 99
DpnII	GATC	2 cut(s)	88, 97
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	3 cut(s)	141, 200, 273
FaiI	YATR	6 cut(s)	139, 167, 198, 260, 271, 371
FaqI	GGGAC	2 cut(s)	133, 304
FatI	CATG	3 cut(s)	137, 196, 269
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	4 cut(s)	187, 310, 386, 459
FspBI	CTAG	2 cut(s)	17, 299
GlaI	GCGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	177, 255, 512
HapII	CCGG	4 cut(s)	61, 410, 426, 483
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	3 cut(s)	141, 200, 273
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	4 cut(s)	44, 146, 221, 234
HpaII	CCGG	4 cut(s)	61, 410, 426, 483
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	229, 407
Hpy188I	TCNGA	3 cut(s)	205, 220, 465
Hpy188III	TCNNGA	3 cut(s)	61, 71, 80
Hpy8I	GTNNAC	2 cut(s)	229, 407
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	77, 277, 281, 486
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	3 cut(s)	4, 200, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	141, 200, 273
HspAI	GCGC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	88, 97
LmnI	GCTCC	1 cut(s)	485
LweI	GCATC	2 cut(s)	209, 364
MaeI	CTAG	2 cut(s)	17, 299
MaeII	ACGT	1 cut(s)	435
MalI	GATC	2 cut(s)	90, 99
MboI	GATC	2 cut(s)	88, 97
MboII	GAAGA	4 cut(s)	39, 49, 115, 218
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	137, 432
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	170, 188, 438, 448, 502
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	4 cut(s)	61, 410, 426, 483
MspR9I	CCNGG	4 cut(s)	187, 411, 426, 427
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	3 cut(s)	411, 426, 427
NdeII	GATC	2 cut(s)	88, 97
NlaIII	CATG	3 cut(s)	141, 200, 273
NlaIV	GGNNCC	2 cut(s)	65, 431
NsiI	ATGCAT	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	44, 221, 234
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	65, 431
PsuI	RGATCY	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	88, 97
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	187, 411, 426, 427
SduI	GDGCHC	2 cut(s)	137, 432
SetI	ASST	9 cut(s)	13, 69, 78, 162, 266, 300, 352, 438, 490
SfaNI	GCATC	2 cut(s)	209, 364
SfcI	CTRYAG	1 cut(s)	229
SmaI	CCCGGG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SrfI	GCCCGGGC	1 cut(s)	427
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	17, 299
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	4 cut(s)	185, 409, 424, 425
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	144, 156
TfiI	GAWTC	3 cut(s)	44, 221, 234
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	3 cut(s)	244, 250, 314
TspDTI	ATGAA	1 cut(s)	461
TspMI	CCCGGG	1 cut(s)	425
TspRI	CASTG	3 cut(s)	244, 250, 314
XmaI	CCCGGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	17, 299
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.