Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Reverse (-)

355826 .. 360571

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000102.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgatctgtcgaacaagacagatacatgacgccaagacatcagcttgcatgcatccccaaagtgacaacgacatcaacatgcatccccatagtgacaacgacgcttcaatgcgtcctggaatatatgaaatgtcacaagctgacgaattacccattgaccagcccaactgtgatacacccaatgaagagaatatacttcagagtttttccccctctctacatcatcaactgaagaatccgctgcgaatgttcctcctcaggcttcttgatggcgattggggagatctcaatcaaccacacaaacccatcttcatcaagggcacatggttcaagtcccgcttcgacctctccatcaccgactgcctcaacgcctgggtctaccatgcctccgaagacgaggttagagaccgagcggcccagtgggaccagcctgtatcgaagtacgtctcattagccaagcgctatttagggtttcagcactctgattctgtctacggatgcactgacactggcaatggccacagaaggttgtcatggacttttgagaaggaagggacgaagctagaatggcagtggaagtgtcaaccatcccctaacagtaaggaaataacagctacagtgttggattttctgatggatgcaaatgttgggttaagactctcaaaacaagaagcggttgggaaactgccacaagaggaagagagcacagacaaaactaaaacttatgtcagtgatgatgagaatagtgatgtggaaaccttgaaagatcctccagctacctccaaggatattccatctagtaggtctcgaggtcgaaatagggcattggagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

278

Amino Acids

31.82

Weight (kDa)

5.58

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	2 cut(s)	378, 492
AciI	CCGC	4 cut(s)	239, 337, 413, 674
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	1 cut(s)	517
AcuI	CTGAAG	2 cut(s)	182, 251
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	108, 331, 763
AjnI	CCWGG	2 cut(s)	115, 371
AluBI	AGCT	5 cut(s)	44, 140, 562, 614, 776
AluI	AGCT	5 cut(s)	44, 140, 562, 614, 776
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	3 cut(s)	399, 451, 810
AlwI	GGATC	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	807
Aor51HI	AGCGCT	1 cut(s)	461
AoxI	GGCC	2 cut(s)	414, 517
ApeKI	GCWGC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	415, 424
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	6 cut(s)	263, 314, 359, 595, 628, 802
BciT130I	CCWGG	2 cut(s)	117, 373
BcoDI	GTCTC	3 cut(s)	399, 451, 810
BfaI	CTAG	2 cut(s)	563, 798
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	463
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	2 cut(s)	242, 414
BlsI	GCNGC	2 cut(s)	243, 415
Bme1390I	CCNGG	2 cut(s)	117, 373
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	415, 424
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	117, 373
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	4 cut(s)	61, 91, 488, 628
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	2 cut(s)	399, 810
BsaJI	CCNNGG	2 cut(s)	372, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bse1I	ACTGG	2 cut(s)	418, 514
Bse21I	CCTNAGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	117, 373
BseDI	CCNNGG	2 cut(s)	372, 783
BseGI	GGATG	5 cut(s)	52, 82, 503, 587, 643
BseJI	GATNNNNATC	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	418, 514
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	2 cut(s)	416, 519
BsiHKAI	GWGCWC	1 cut(s)	707
BsiHKCI	CYCGRG	1 cut(s)	807
BslFI	GGGAC	3 cut(s)	319, 437, 568
BsmAI	GTCTC	3 cut(s)	399, 451, 810
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	3 cut(s)	319, 437, 568
BsnI	GGCC	2 cut(s)	416, 519
Bso31I	GGTCTC	2 cut(s)	399, 810
BsoBI	CYCGRG	1 cut(s)	807
Bsp1286I	GDGCHC	2 cut(s)	323, 707
Bsp143I	GATC	3 cut(s)	3, 283, 766
BspACI	CCGC	4 cut(s)	239, 337, 413, 674
BspANI	GGCC	2 cut(s)	416, 519
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	761
BspTNI	GGTCTC	2 cut(s)	399, 810
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	418, 514
BssECI	CCNNGG	2 cut(s)	372, 783
BssMI	GATC	3 cut(s)	3, 283, 766
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	117, 373
Bst4CI	ACNGT	3 cut(s)	170, 599, 619
Bst6I	CTCTTC	2 cut(s)	180, 693
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	46, 50
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	5 cut(s)	52, 82, 503, 587, 643
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	6, 286, 769
BstMAI	GTCTC	3 cut(s)	399, 451, 810
BstMBI	GATC	3 cut(s)	3, 283, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstNI	CCWGG	2 cut(s)	117, 373
BstNSI	RCATGY	2 cut(s)	52, 82
BstSCI	CCNGG	2 cut(s)	115, 371
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	283, 766
BstYI	RGATCY	2 cut(s)	283, 766
Bsu36I	CCTNAGG	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	416, 519
BtsCI	GGATG	5 cut(s)	52, 82, 503, 587, 643
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	6 cut(s)	425, 501, 507, 578, 624, 736
Cac8I	GCNNGC	2 cut(s)	46, 50
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	2 cut(s)	415, 424
CseI	GACGC	3 cut(s)	38, 101, 110
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	6 cut(s)	26, 49, 79, 324, 383, 534
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	3 cut(s)	5, 285, 768
DpnII	GATC	3 cut(s)	3, 283, 766
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	180, 693
EarI	CTCTTC	2 cut(s)	180, 693
Eco130I	CCWWGG	1 cut(s)	783
Eco31I	GGTCTC	2 cut(s)	399, 810
Eco47I	GGWCC	1 cut(s)	424
Eco47III	AGCGCT	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	182, 251
Eco81I	CCTNAGG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	115, 371
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	2 cut(s)	54, 84
ErhI	CCWWGG	1 cut(s)	783
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	29, 52, 82, 327, 386, 537
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	3 cut(s)	319, 437, 568
FatI	CATG	6 cut(s)	25, 48, 78, 323, 382, 533
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	2 cut(s)	378, 492
Fnu4HI	GCNGC	2 cut(s)	242, 414
FokI	GGATG	5 cut(s)	39, 69, 510, 574, 650
Fsp4HI	GCNGC	2 cut(s)	242, 414
FspBI	CTAG	2 cut(s)	563, 798
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	2 cut(s)	242, 414
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	416, 519
HgaI	GACGC	3 cut(s)	38, 101, 110
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	29, 52, 82, 327, 386, 537
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	235, 485, 657
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	379, 493, 584
Hpy188I	TCNGA	4 cut(s)	201, 391, 484, 633
Hpy188III	TCNNGA	2 cut(s)	266, 807
Hpy8I	GTNNAC	3 cut(s)	379, 493, 584
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	519, 541, 545
HpyCH4III	ACNGT	3 cut(s)	170, 599, 619
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	48, 52, 82, 501, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	29, 52, 82, 327, 386, 537
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	3, 283, 766
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	4 cut(s)	61, 91, 488, 628
MaeI	CTAG	2 cut(s)	563, 798
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	62, 92, 132
MalI	GATC	3 cut(s)	5, 285, 768
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	3, 283, 766
MboII	GAAGA	5 cut(s)	197, 244, 301, 404, 710
MflI	RGATCY	2 cut(s)	283, 766
MhlI	GDGCHC	2 cut(s)	323, 707
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	2 cut(s)	54, 84
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	117, 373
MvaI	CCWGG	2 cut(s)	117, 373
MwoI	GCNNNNNNNGC	1 cut(s)	568
NdeII	GATC	3 cut(s)	3, 283, 766
NlaIII	CATG	6 cut(s)	29, 52, 82, 327, 386, 537
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	3 cut(s)	62, 92, 132
NsiI	ATGCAT	2 cut(s)	54, 84
NspI	RCATGY	2 cut(s)	52, 82
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	807
PfeI	GAWTC	2 cut(s)	235, 485
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	243, 415
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	115, 371
PspGI	CCWGG	2 cut(s)	115, 371
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	2 cut(s)	415, 424
PsuI	RGATCY	2 cut(s)	283, 766
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	2 cut(s)	242, 414
Sau3AI	GATC	3 cut(s)	3, 283, 766
Sau96I	GGNCC	2 cut(s)	415, 424
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	2 cut(s)	117, 373
SduI	GDGCHC	2 cut(s)	323, 707
SfaNI	GCATC	4 cut(s)	61, 91, 488, 628
SfcI	CTRYAG	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	424
SlaI	CTCGAG	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	239, 337, 413, 674
SspMI	CTAG	2 cut(s)	563, 798
StyD4I	CCNGG	2 cut(s)	115, 371
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	170, 599, 619
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	5 cut(s)	10, 342, 437, 808, 814
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	235, 485
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	6 cut(s)	425, 508, 514, 578, 624, 736
TseFI	GTSAC	3 cut(s)	62, 92, 132
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	3 cut(s)	62, 92, 132
TspDTI	ATGAA	3 cut(s)	141, 198, 301
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	6 cut(s)	425, 508, 514, 578, 624, 736
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	2 cut(s)	52, 82
XhoI	CTCGAG	1 cut(s)	807
XmiI	GTMKAC	2 cut(s)	378, 492
XspI	CTAG	2 cut(s)	563, 798
Zsp2I	ATGCAT	2 cut(s)	54, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.