Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Reverse (-)

8839670 .. 8842929

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGATCAAGAGTTTATCTCTGGCTTCTGCTCGCATCTTCTTCTCTAGAACCTCTCCATCTTTTCTTATTCCCTTCTCAAAGCTCTCTGTATCTCATCGTCGGAAATTCTCAGTAATGGCCAGTGGAAGCGACGAGTTCGTGAAAGGAAATGTTTATCCAAATGGCGTTGCTCTCATTACTCTTGATCGACCTAAAGCTCTCAACGCCATGAATCTAGAAATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATATGATCCTGGAGTCAAATGTGTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGGAATGGATATTAAAGGAGTTGTTGCAGAGATCCTAATGGACAAAAATACGTCTCTTGTGCAAAAGGTATTTACAGCTGAGTATAGCCTGATATGCAAGATTGCTGGATACAGAAAACCATATATCTCTTTAATGGATGGCATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGACGCTACCGAGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACCATCTGGAAAGCTAGGTTCACTCAGAGAAGCCATTTTGTCAGCTGACCTTTCCAAGGATCCCCAACAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCTGAAACTGAGTCCCACCTCCAAATGCTTTTGCCTCAGATAGAATCAGCTTTTAGTGTAAGTAAGTCTGTTAAGGAAACAATAGAAGAGCTGAAAAAGTTCCAGCAGAGCAGTGAGGCTTCAGTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTGTGCCAAGGGTAAAACCAACAACGCCATGGCAACACTTAACGGTGTGATGATAACTGAGTACCGCATTGCTCTAAGATCTGCATTGCGCAGTGATTTCACTGAAGGTGTTAGAGCAGTCTTGACTGACAAGGACCAGAATCCGAAATGGAAACCAGCGAGCTTAGACGAAGTAGATGAAACCGAAGTGGACGCGCTCTTTATGCCATTAAGTCCTGAATTTGAAGAGCTAAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

418

Amino Acids

45.74

Weight (kDa)

6.05

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	54 - 266	5.3e-24	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	57 - 402	3.1e-105	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1106
AccB1I	GGYRCC	1 cut(s)	970
AccB7I	CCANNNNNTGG	2 cut(s)	545, 569
AccII	CGCG	1 cut(s)	1211
AciI	CCGC	1 cut(s)	1081
AclWI	GGATC	6 cut(s)	257, 343, 616, 749, 762, 794
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	104, 1235
AcuI	CTGAAG	3 cut(s)	642, 906, 1140
AfaI	GTAC	4 cut(s)	233, 696, 1001, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	545, 569, 605, 751
AgsI	TTSAA	3 cut(s)	229, 962, 1241
AjnI	CCWGG	2 cut(s)	265, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	6 cut(s)	257, 343, 616, 749, 762, 794
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	2 cut(s)	117, 306
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	2 cut(s)	104, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
Asp700I	GAANNNNTTC	2 cut(s)	646, 899
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	1107, 1213
AspS9I	GGNCC	3 cut(s)	306, 526, 1150
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	2 cut(s)	526, 1150
AvrII	CCTAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	973
BalI	TGGCCA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	970
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	3 cut(s)	64, 449, 706
BciT130I	CCWGG	2 cut(s)	267, 600
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	4 cut(s)	45, 215, 626, 710
BfuI	GTATCC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	1094
BisI	GCNGC	1 cut(s)	588
BlnI	CCTAGG	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	589
BmcAI	AGTACT	1 cut(s)	1001
Bme1390I	CCNGG	2 cut(s)	267, 600
Bme18I	GGWCC	2 cut(s)	526, 1150
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	3 cut(s)	306, 526, 1150
BmiI	GGNNCC	2 cut(s)	756, 972
BmrFI	CCNGG	2 cut(s)	267, 600
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	42, 652
BmuI	ACTGGG	1 cut(s)	645
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	288
BsaJI	CCNNGG	6 cut(s)	598, 625, 750, 952, 1023, 1044
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 569, 605, 751
Bse1I	ACTGG	2 cut(s)	120, 640
Bse3DI	GCAATG	3 cut(s)	540, 1083, 1100
BseBI	CCWGG	2 cut(s)	267, 600
BseDI	CCNNGG	6 cut(s)	598, 625, 750, 952, 1023, 1044
BseGI	GGATG	2 cut(s)	460, 768
BseLI	CCNNNNNNNGG	4 cut(s)	545, 569, 605, 751
BseMI	GCAATG	3 cut(s)	540, 1083, 1100
BseMII	CTCAG	6 cut(s)	123, 387, 733, 801, 851, 1065
BseNI	ACTGG	2 cut(s)	120, 640
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	1211
BshFI	GGCC	2 cut(s)	119, 308
BshNI	GGYRCC	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	697, 799
BslI	CCNNNNNNNGG	4 cut(s)	545, 569, 605, 751
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	697, 799
BsnI	GGCC	2 cut(s)	119, 308
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp143I	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
Bsp19I	CCATGG	1 cut(s)	1044
BspACI	CCGC	1 cut(s)	1081
BspANI	GGCC	2 cut(s)	119, 308
BspCNI	CTCAG	6 cut(s)	122, 388, 732, 802, 850, 1066
BspFNI	CGCG	1 cut(s)	1211
BspLI	GGNNCC	2 cut(s)	756, 972
BspPI	GGATC	6 cut(s)	257, 343, 616, 749, 762, 794
BspQI	GCTCTTC	2 cut(s)	882, 1236
BspT107I	GGYRCC	1 cut(s)	970
BsrDI	GCAATG	3 cut(s)	540, 1083, 1100
BsrI	ACTGG	2 cut(s)	120, 640
BssECI	CCNNGG	6 cut(s)	598, 625, 750, 952, 1023, 1044
BssMI	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
BssT1I	CCWWGG	5 cut(s)	625, 750, 952, 1023, 1044
Bst2UI	CCWGG	2 cut(s)	267, 600
Bst4CI	ACNGT	3 cut(s)	526, 669, 1061
Bst6I	CTCTTC	2 cut(s)	882, 1236
BstC8I	GCNNGC	3 cut(s)	31, 242, 1177
BstDEI	CTNAG	8 cut(s)	109, 396, 719, 810, 837, 1074, 1091, 1180
BstDSI	CCRYGG	1 cut(s)	1044
BstENI	CCTNNNNNAGG	2 cut(s)	603, 749
BstF5I	GGATG	2 cut(s)	460, 768
BstFNI	CGCG	1 cut(s)	1211
BstHHI	GCGC	2 cut(s)	1107, 1213
BstKTI	GATC	8 cut(s)	6, 187, 265, 351, 611, 757, 802, 1097
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 314, 411, 926, 935, 944, 1219
BstNI	CCWGG	2 cut(s)	267, 600
BstSCI	CCNGG	2 cut(s)	265, 598
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	1 cut(s)	1211
BstV1I	GCAGC	1 cut(s)	599
BstX2I	RGATCY	4 cut(s)	348, 608, 754, 1094
BstYI	RGATCY	4 cut(s)	348, 608, 754, 1094
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	119, 308
BtgI	CCRYGG	1 cut(s)	1044
BtsCI	GGATG	2 cut(s)	460, 768
BtsI	GCAGTG	3 cut(s)	802, 919, 1114
BtsIMutI	CAGTG	6 cut(s)	127, 665, 802, 919, 1114, 1116
Cac8I	GCNNGC	3 cut(s)	31, 242, 1177
CfoI	GCGC	2 cut(s)	1107, 1213
Cfr13I	GGNCC	3 cut(s)	306, 526, 1150
CseI	GACGC	2 cut(s)	507, 1217
Csp6I	GTAC	4 cut(s)	232, 695, 1000, 1078
CviAII	CATG	3 cut(s)	208, 494, 1045
CviQI	GTAC	4 cut(s)	232, 695, 1000, 1078
DdeI	CTNAG	8 cut(s)	109, 396, 719, 810, 837, 1074, 1091, 1180
DpnI	GATC	8 cut(s)	5, 186, 264, 350, 610, 756, 801, 1096
DpnII	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	882, 1236
EarI	CTCTTC	2 cut(s)	882, 1236
Eco130I	CCWWGG	5 cut(s)	625, 750, 952, 1023, 1044
Eco47I	GGWCC	2 cut(s)	526, 1150
Eco57I	CTGAAG	3 cut(s)	642, 906, 1140
Eco88I	CYCGRG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	2 cut(s)	603, 749
EcoRII	CCWGG	2 cut(s)	265, 598
EcoT14I	CCWWGG	5 cut(s)	625, 750, 952, 1023, 1044
ErhI	CCWWGG	5 cut(s)	625, 750, 952, 1023, 1044
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	3 cut(s)	211, 497, 1048
FaqI	GGGAC	2 cut(s)	697, 799
FatI	CATG	3 cut(s)	207, 493, 1044
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	2 cut(s)	467, 755
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	4 cut(s)	45, 215, 626, 710
FspI	TGCGCA	1 cut(s)	1106
GlaI	GCGC	2 cut(s)	1106, 1212
GluI	GCNGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	119, 308
HgaI	GACGC	2 cut(s)	507, 1217
HhaI	GCGC	2 cut(s)	1107, 1213
Hin1II	CATG	3 cut(s)	211, 497, 1048
Hin6I	GCGC	2 cut(s)	1105, 1211
HinP1I	GCGC	2 cut(s)	1105, 1211
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	6 cut(s)	211, 270, 549, 812, 845, 1156
Hpy166II	GTNNAC	2 cut(s)	716, 1207
Hpy188I	TCNGA	5 cut(s)	102, 661, 722, 840, 1161
Hpy8I	GTNNAC	2 cut(s)	716, 1207
Hpy99I	CGWCG	3 cut(s)	102, 134, 290
HpyAV	CCTTC	6 cut(s)	82, 284, 599, 636, 666, 1115
HpyCH4III	ACNGT	3 cut(s)	526, 669, 1061
HpyCH4IV	ACGT	2 cut(s)	368, 1251
HpyCH4V	TGCA	8 cut(s)	317, 344, 379, 414, 587, 665, 929, 1100
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 314, 411, 926, 935, 944, 1219
HpyF3I	CTNAG	8 cut(s)	109, 396, 719, 810, 837, 1074, 1091, 1180
HpySE526I	ACGT	2 cut(s)	368, 1251
Hsp92II	CATG	3 cut(s)	211, 497, 1048
HspAI	GCGC	2 cut(s)	1105, 1211
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
LguI	GCTCTTC	2 cut(s)	882, 1236
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	2 cut(s)	42, 652
MaeI	CTAG	4 cut(s)	45, 215, 626, 710
MaeII	ACGT	2 cut(s)	368, 1251
MalI	GATC	8 cut(s)	5, 186, 264, 350, 610, 756, 801, 1096
MboI	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
MboII	GAAGA	4 cut(s)	28, 31, 899, 1253
MflI	RGATCY	4 cut(s)	348, 608, 754, 1094
MhlI	GDGCHC	1 cut(s)	973
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	104, 787, 1235
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	279, 821
MmeI	TCCRAC	2 cut(s)	80, 550
MnlI	CCTC	6 cut(s)	61, 513, 539, 830, 846, 910
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	646, 899
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	5 cut(s)	330, 449, 873, 1056, 1226
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	395, 740
MspR9I	CCNGG	2 cut(s)	267, 600
MvaI	CCWGG	2 cut(s)	267, 600
MvnI	CGCG	1 cut(s)	1211
MwoI	GCNNNNNNNGC	7 cut(s)	203, 314, 411, 926, 935, 944, 1219
NcoI	CCATGG	1 cut(s)	1044
NdeII	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
NlaIII	CATG	3 cut(s)	211, 497, 1048
NlaIV	GGNNCC	2 cut(s)	756, 972
NsbI	TGCGCA	1 cut(s)	1106
PciSI	GCTCTTC	2 cut(s)	882, 1236
PdmI	GAANNNNTTC	2 cut(s)	646, 899
PfeI	GAWTC	4 cut(s)	211, 549, 845, 1156
PflMI	CCANNNNNTGG	2 cut(s)	545, 569
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	2 cut(s)	278, 820
PpsI	GAGTC	2 cut(s)	278, 820
Psp6I	CCWGG	2 cut(s)	265, 598
PspGI	CCWGG	2 cut(s)	265, 598
PspN4I	GGNNCC	2 cut(s)	756, 972
PspPI	GGNCC	3 cut(s)	306, 526, 1150
PsuI	RGATCY	4 cut(s)	348, 608, 754, 1094
PvuII	CAGCTG	2 cut(s)	395, 740
RsaI	GTAC	4 cut(s)	233, 696, 1001, 1079
RsaNI	GTAC	4 cut(s)	232, 695, 1000, 1078
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	2 cut(s)	882, 1236
SaqAI	TTAA	5 cut(s)	330, 449, 873, 1056, 1226
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	8 cut(s)	3, 184, 262, 348, 608, 754, 799, 1094
Sau96I	GGNCC	3 cut(s)	306, 526, 1150
ScaI	AGTACT	1 cut(s)	1001
SchI	GAGTC	2 cut(s)	279, 821
ScrFI	CCNGG	2 cut(s)	267, 600
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	2 cut(s)	42, 652
SinI	GGWCC	2 cut(s)	526, 1150
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	104, 787, 1235
SsiI	CCGC	1 cut(s)	1081
SspMI	CTAG	4 cut(s)	45, 215, 626, 710
StyD4I	CCNGG	2 cut(s)	265, 598
StyI	CCWWGG	5 cut(s)	625, 750, 952, 1023, 1044
TaaI	ACNGT	3 cut(s)	526, 669, 1061
TaiI	ACGT	2 cut(s)	371, 1254
TaqI	TCGA	2 cut(s)	187, 288
TasI	AATT	3 cut(s)	104, 787, 1235
TatI	WGTACW	2 cut(s)	231, 999
TfiI	GAWTC	4 cut(s)	211, 549, 845, 1156
Tru1I	TTAA	5 cut(s)	330, 449, 873, 1056, 1226
Tru9I	TTAA	5 cut(s)	330, 449, 873, 1056, 1226
TscAI	CASTG	6 cut(s)	127, 672, 802, 919, 1114, 1123
TseI	GCWGC	1 cut(s)	587
TspDTI	ATGAA	5 cut(s)	224, 264, 567, 957, 1209
TspRI	CASTG	6 cut(s)	127, 672, 802, 919, 1114, 1123
Van91I	CCANNNNNTGG	2 cut(s)	545, 569
VpaK11BI	GGWCC	2 cut(s)	526, 1150
XagI	CCTNNNNNAGG	2 cut(s)	603, 749
XapI	RAATTY	2 cut(s)	104, 1235
XbaI	TCTAGA	2 cut(s)	44, 214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1042
XmaJI	CCTAGG	1 cut(s)	625
XmnI	GAANNNNTTC	2 cut(s)	646, 899
XspI	CTAG	4 cut(s)	45, 215, 626, 710
ZrmI	AGTACT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.