RLG00000016169

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
4415112 .. 4418245
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016169

Sequence Viewer

Length: 1260 bp
ATGCGAAGCTTTTTGGGAGCGACCCAAATTCTGAGCAAGTCTTCATCTTTCTTCCCACCCACAAATCCCAACCTCTCCTTCTCCAAAACCCCCATCTTCCTCCGAACCTTCGCGATCATGGCCACCGCCGCCGACGAGCTCGTCAAGGGCGCCGTTCACCCAAACGGCGTCGCTGTGATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACATTGATATGGATTTGAAATACAAGAGCTATCTGGATCAGTGGGAATCGGACCCGAATGTGAAGTGTGTTTTGGTCGACAGCAGCTCAGCTCGTGCCTTTTGTGCTGGAATGGATATTAAAGGGGTTGTTGCTGAAATTCAAAAGGACAAGAACACACCTCTTGTGCCCAAGGTATTCACTGCTGAGTATTCTTTAATATGCAAAATATCTAACTACAAGAAGCCGTATGTAAGTTTCATGGATGGCATAACAATGGGCTTTGGAATTGGCCTATCAGGTCATGGTCGCTACCGGATCATTACAGAGAGGACTCTTCTTGCTATGCCAGAAAATGGTATTGGATTGTTTCCAGACGTTGGCTTTTCACATATAGCGGCACAGAGTCCAGGAGGAGGATCAGTTGGTGCTTATCTTGGAATCACTGGGAAAAGAATTTCGACACCATCGGATGCACTCTATGTAGGTCTTGGGACACATTTTGTGCCATCTCAAAACTTAGGTTCGGTAAAGGAGGCCCTTTTGTCAACTAACTTTTCCCAGGATCCTCATGAGGACATCAAAACGATTTTGGCGAAGTTCAGCAGTAAACCTGATTCCGAATCCCAACTGAAGCAGCTTTTACCTCAAATAGCCTCATCATTTGGTGCAAATAAGTCAGTTATTGGGACAATTGAAGAACTCAAAAAGCATCAATCGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTTTTCTTGACACAGAAGTATTTCTCCAAAGTTGCATCTGCCCTTGGGAAGAATGACAATCAATTATCCACGCTGACTGGTGTTATGAAAACTGAATATCGCATTGCTGTAAGATCATCCTTGCGTAATGACTTTGCTGAAGGTGTGCGGGCAGTGTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGTCAAGGTTGGAGGAAGTTAATGAGAACGAAGTGGAAGCTCTGTTTGAACCATTGAGCCCAAATGTGGAGGAGTTGAGCGTGTGA

Protein Analysis

420

Amino Acids

45.46

Weight (kDa)

7.02

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 54 - 266 5.7e-23 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 58 - 407 2.7e-105 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 2 cut(s) 548, 572
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 113
AciI CCGC 4 cut(s) 126, 129, 590, 1132
AclWI GGATC 6 cut(s) 258, 518, 619, 752, 765, 1161
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 3 cut(s) 27, 351, 648
AcuI CTGAAG 2 cut(s) 845, 1143
AcyI GRCGYC 2 cut(s) 150, 168
AfiI CCNNNNNNNGG 4 cut(s) 548, 572, 608, 1240
AgsI TTSAA 5 cut(s) 232, 356, 890, 956, 1223
AjnI CCWGG 2 cut(s) 601, 753
AjuI GAANNNNNNNTTGG 6 cut(s) 62, 94, 269, 301, 537, 569
AluBI AGCT 9 cut(s) 9, 139, 200, 243, 300, 305, 832, 950, 1214
AluI AGCT 9 cut(s) 9, 139, 200, 243, 300, 305, 832, 950, 1214
Alw21I GWGCWC 2 cut(s) 141, 976
AlwI GGATC 6 cut(s) 258, 518, 619, 752, 765, 1161
AoxI GGCC 3 cut(s) 120, 484, 729
ApeKI GCWGC 2 cut(s) 297, 829
ApoI RAATTY 3 cut(s) 27, 351, 648
Asp700I GAANNNNTTC 2 cut(s) 951, 1004
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 265, 730
AsuHPI GGTGA 2 cut(s) 149, 172
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 757
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 141, 1235
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 141, 976
BbvI GCAGC 2 cut(s) 309, 841
BccI CCATC 4 cut(s) 101, 452, 667, 709
BceAI ACGGC 3 cut(s) 137, 181, 424
BciT130I CCWGG 2 cut(s) 603, 755
BclI TGATCA 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 4 cut(s) 129, 298, 591, 830
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 4 cut(s) 130, 299, 592, 831
Bme1390I CCNGG 2 cut(s) 603, 755
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 730
BmiI GGNNCC 4 cut(s) 151, 267, 759, 1172
BmrFI CCNGG 2 cut(s) 603, 755
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 4 cut(s) 655, 910, 913, 1028
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 1158
BsaHI GRCGYC 2 cut(s) 150, 168
BsaJI CCNNGG 3 cut(s) 384, 753, 1027
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 4 cut(s) 548, 572, 608, 1240
Bse1I ACTGG 2 cut(s) 643, 1066
Bse3DI GCAATG 1 cut(s) 1086
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 2 cut(s) 603, 755
BseDI CCNNGG 3 cut(s) 384, 753, 1027
BseGI GGATG 3 cut(s) 463, 670, 1100
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 4 cut(s) 548, 572, 608, 1240
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 3 cut(s) 23, 315, 390
BseNI ACTGG 2 cut(s) 643, 1066
BseRI GAGGAG 2 cut(s) 621, 1259
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 2 cut(s) 309, 841
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 122, 486, 731
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 141, 976
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 2 cut(s) 700, 895
BslI CCNNNNNNNGG 4 cut(s) 548, 572, 608, 1240
BsmFI GGGAC 2 cut(s) 700, 895
BsnI GGCC 3 cut(s) 122, 486, 731
Bsp1286I GDGCHC 4 cut(s) 141, 384, 976, 1235
Bsp143I GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
Bsp1720I GCTNAGC 1 cut(s) 301
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 4 cut(s) 126, 129, 590, 1132
BspANI GGCC 3 cut(s) 122, 486, 731
BspCNI CTCAG 3 cut(s) 24, 314, 391
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 151, 267, 759, 1172
BspPI GGATC 6 cut(s) 258, 518, 619, 752, 765, 1161
BspQI GCTCTTC 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 1086
BsrI ACTGG 2 cut(s) 643, 1066
BssECI CCNNGG 3 cut(s) 384, 753, 1027
BssMI GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
BssNI GRCGYC 2 cut(s) 150, 168
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 2 cut(s) 384, 1027
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 603, 755
Bst4CI ACNGT 1 cut(s) 928
Bst6I CTCTTC 2 cut(s) 534, 957
BstACI GRCGYC 2 cut(s) 150, 168
BstC8I GCNNGC 1 cut(s) 1134
BstDEI CTNAG 4 cut(s) 32, 301, 399, 712
BstF5I GGATG 3 cut(s) 463, 670, 1100
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 9 cut(s) 117, 180, 190, 253, 513, 614, 760, 1100, 1156
BstMBI GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 5 cut(s) 119, 128, 206, 317, 947
BstNI CCWGG 2 cut(s) 603, 755
BstSCI CCNGG 2 cut(s) 601, 753
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 309, 841
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BsuRI GGCC 3 cut(s) 122, 486, 731
BtsCI GGATG 3 cut(s) 463, 670, 1100
BtsI GCAGTG 2 cut(s) 393, 1143
BtsIMutI CAGTG 4 cut(s) 260, 393, 636, 1143
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 1134
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 265, 730
CseI GACGC 1 cut(s) 157
CviAII CATG 5 cut(s) 118, 211, 454, 497, 764
DdeI CTNAG 4 cut(s) 32, 301, 399, 712
DinI GGCGCC 1 cut(s) 151
DpnI GATC 9 cut(s) 116, 179, 189, 252, 512, 613, 759, 1099, 1155
DpnII GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 534, 957
EarI CTCTTC 2 cut(s) 534, 957
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 384, 1027
Eco24I GRGCYC 2 cut(s) 141, 1235
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 845, 1143
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 601, 753
EcoT14I CCWWGG 2 cut(s) 384, 1027
EcoT38I GRGCYC 2 cut(s) 141, 1235
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 384, 1027
FaeI CATG 5 cut(s) 121, 214, 457, 500, 767
FaqI GGGAC 2 cut(s) 700, 895
FatI CATG 5 cut(s) 117, 210, 453, 496, 763
FauI CCCGC 1 cut(s) 1125
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 129, 298, 591, 830
FokI GGATG 3 cut(s) 470, 677, 1087
FriOI GRGCYC 2 cut(s) 141, 1235
Fsp4HI GCNGC 4 cut(s) 129, 298, 591, 830
GlaI GCGC 1 cut(s) 151
GluI GCNGC 4 cut(s) 129, 298, 591, 830
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 122, 486, 731
HapII CCGG 1 cut(s) 508
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 2 cut(s) 150, 168
Hin1II CATG 5 cut(s) 121, 214, 457, 500, 767
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 292, 741
HindII GTYRAC 2 cut(s) 292, 741
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 7 cut(s) 260, 526, 598, 633, 809, 815, 1159
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 149, 172
Hpy166II GTNNAC 5 cut(s) 157, 292, 741, 803, 1147
Hpy188I TCNGA 7 cut(s) 33, 104, 265, 664, 814, 919, 1158
Hpy188III TCNNGA 5 cut(s) 112, 248, 566, 764, 991
Hpy8I GTNNAC 5 cut(s) 157, 292, 741, 803, 1147
Hpy99I CGWCG 2 cut(s) 137, 173
HpyAV CCTTC 3 cut(s) 88, 118, 1118
HpyCH4III ACNGT 1 cut(s) 928
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 4 cut(s) 417, 668, 863, 1019
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 128, 206, 317, 947
HpyF3I CTNAG 4 cut(s) 32, 301, 399, 712
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 2 cut(s) 150, 168
Hsp92II CATG 5 cut(s) 121, 214, 457, 500, 767
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 2 cut(s) 17, 979
Lsp1109I GCAGC 2 cut(s) 309, 841
LweI GCATC 4 cut(s) 655, 910, 913, 1028
MaeII ACGT 1 cut(s) 570
MalI GATC 9 cut(s) 116, 179, 189, 252, 512, 613, 759, 1099, 1155
MboI GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
MboII GAAGA 7 cut(s) 33, 43, 88, 521, 902, 944, 1045
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 4 cut(s) 141, 384, 976, 1235
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 6 cut(s) 27, 351, 480, 648, 885, 1046
MluNI TGGCCA 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 520, 607
MmeI TCCRAC 1 cut(s) 1164
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 2 cut(s) 951, 1004
MscI TGGCCA 1 cut(s) 122
MseI TTAA 3 cut(s) 333, 410, 1194
MslI CAYNNNNRTG 2 cut(s) 221, 467
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 2 cut(s) 603, 755
MunI CAATTG 1 cut(s) 885
MvaI CCWGG 2 cut(s) 603, 755
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 5 cut(s) 119, 128, 206, 317, 947
NarI GGCGCC 1 cut(s) 150
NdeII GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
NlaIII CATG 5 cut(s) 121, 214, 457, 500, 767
NlaIV GGNNCC 4 cut(s) 151, 267, 759, 1172
NruI TCGCGA 1 cut(s) 113
PagI TCATGA 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PdmI GAANNNNTTC 2 cut(s) 951, 1004
PfeI GAWTC 5 cut(s) 260, 633, 809, 815, 1159
PflMI CCANNNNNTGG 2 cut(s) 548, 572
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 4 cut(s) 130, 299, 592, 831
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 2 cut(s) 520, 606
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 520, 606
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 601, 753
PspGI CCWGG 2 cut(s) 601, 753
PspN4I GGNNCC 4 cut(s) 151, 267, 759, 1172
PspPI GGNCC 2 cut(s) 265, 730
PsuI RGATCY 1 cut(s) 757
PvuI CGATCG 1 cut(s) 190
RruI TCGCGA 1 cut(s) 113
RseI CAYNNNNRTG 2 cut(s) 221, 467
SacI GAGCTC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 3 cut(s) 333, 410, 1194
SatI GCNGC 4 cut(s) 129, 298, 591, 830
Sau3AI GATC 9 cut(s) 114, 177, 187, 250, 510, 611, 757, 1097, 1153
Sau96I GGNCC 2 cut(s) 265, 730
SchI GAGTC 2 cut(s) 520, 607
ScrFI CCNGG 2 cut(s) 603, 755
SduI GDGCHC 4 cut(s) 141, 384, 976, 1235
SfaNI GCATC 4 cut(s) 655, 910, 913, 1028
SfoI GGCGCC 1 cut(s) 151
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 221, 467
Sse9I AATT 6 cut(s) 27, 351, 480, 648, 885, 1046
SsiI CCGC 4 cut(s) 126, 129, 590, 1132
SspDI GGCGCC 1 cut(s) 149
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 601, 753
StyI CCWWGG 2 cut(s) 384, 1027
TaaI ACNGT 1 cut(s) 928
TaiI ACGT 1 cut(s) 573
TaqI TCGA 4 cut(s) 186, 291, 653, 911
TasI AATT 6 cut(s) 27, 351, 480, 648, 885, 1046
TauI GCSGC 2 cut(s) 131, 593
TfiI GAWTC 5 cut(s) 260, 633, 809, 815, 1159
Tru1I TTAA 3 cut(s) 333, 410, 1194
Tru9I TTAA 3 cut(s) 333, 410, 1194
TscAI CASTG 4 cut(s) 260, 400, 643, 1143
TseI GCWGC 2 cut(s) 297, 829
TspDTI ATGAA 5 cut(s) 33, 227, 442, 960, 1085
TspRI CASTG 4 cut(s) 260, 400, 643, 1143
Van91I CCANNNNNTGG 2 cut(s) 548, 572
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 3 cut(s) 27, 351, 648
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 2 cut(s) 951, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.