Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Forward (+)

4183320 .. 4186954

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG056300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCGAAGCTTTTTCGGAGCGACCCAAATTCTGAGCAAGTCTTCATCTTTCTTCCTACCCACAAATCCCAACATCTCCTTCTCCAAAACCCCCATCTTCCTCCGAACCTTCGCGATCATGGCCACCGCCGCCGACGAGCTCGTCAAGGGCGCCGTTCACCCAAACGGCATCGCTGTGATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACATAGATATGGATTTGAAATTCAAGAGCTATCTGGATCAGTGGGAATCGGACCCGAATGTGAAGTGTGTTTTGGTCGATAGCAGCTCAGCTCGTGCCTTTTGTGCAGGAATGGATATTAAAGGGGTTGTTGCTGAAATTCAAAAGGACAAGAACACACCTCTTGTGCCCAAGGTATTCACTGCTGAGTATTCTTTGATATGCAAAATATCTAACTACAAGAAGCCGTATGTAAGTTTCATGGATGGCATAACAATGGGCTTTGGAATTGGCCTATCAGGTCATGGTCGCTACCGGATCATTACAGAGAGGACTCTTCTTGCTATGCCAGAAAATGGTATTGGATTGTTTCCAGATGTTGGCTTTTCACATATAGCGGCACAGAGTCCAGGAGGAGGATCAGTTGGTGCTTATCTTGGAATCACTGGGAAAAGAATTTCGACTCCATCAGATGCACTCTATGTAGGCCTTGGGACACATTTTGTGCCATCTCAGAACTTAGGTTCAGTAAAGGAGGCCCTTTTGTCAACTAACTTGTATGTTATCTTATCCTCTTTTTTCTTTTGGAGAAAGTTTTCTTATCCTCTTTATACATTCTCCTTTTCCATACTTCTGATGTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

279

Amino Acids

30.55

Weight (kDa)

9.23

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	54 - 239	2.6e-23	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	58 - 248	1.2e-70	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	2 cut(s)	548, 572
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	126, 129, 590
AclWI	GGATC	3 cut(s)	258, 518, 619
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	4 cut(s)	27, 233, 351, 648
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	3 cut(s)	548, 572, 608
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	3 cut(s)	232, 238, 356
AjnI	CCWGG	1 cut(s)	601
AjuI	GAANNNNNNNTTGG	6 cut(s)	62, 94, 269, 301, 537, 569
AluBI	AGCT	6 cut(s)	9, 139, 200, 243, 300, 305
AluI	AGCT	6 cut(s)	9, 139, 200, 243, 300, 305
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	258, 518, 619
AoxI	GGCC	4 cut(s)	120, 484, 679, 729
ApeKI	GCWGC	1 cut(s)	297
ApoI	RAATTY	4 cut(s)	27, 233, 351, 648
Asp700I	GAANNNNTTC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	265, 730
AsuHPI	GGTGA	2 cut(s)	149, 172
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	4 cut(s)	101, 452, 667, 709
BceAI	ACGGC	3 cut(s)	137, 181, 424
BciT130I	CCWGG	1 cut(s)	603
BclI	TGATCA	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	3 cut(s)	129, 298, 591
BlpI	GCTNAGC	1 cut(s)	301
BlsI	GCNGC	3 cut(s)	130, 299, 592
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	265, 730
BmiI	GGNNCC	2 cut(s)	151, 267
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	177, 655
BmuI	ACTGGG	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	384, 682
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 572, 608
Bse1I	ACTGG	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	384, 682
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	3 cut(s)	548, 572, 608
BseMII	CTCAG	4 cut(s)	23, 315, 390, 719
BseNI	ACTGG	1 cut(s)	643
BseRI	GAGGAG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	122, 486, 681, 731
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	3 cut(s)	548, 572, 608
BsmFI	GGGAC	1 cut(s)	700
BsnI	GGCC	4 cut(s)	122, 486, 681, 731
Bsp1286I	GDGCHC	2 cut(s)	141, 384
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
Bsp1720I	GCTNAGC	1 cut(s)	301
Bsp68I	TCGCGA	1 cut(s)	113
BspACI	CCGC	3 cut(s)	126, 129, 590
BspANI	GGCC	4 cut(s)	122, 486, 681, 731
BspCNI	CTCAG	4 cut(s)	24, 314, 391, 718
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	151, 267
BspPI	GGATC	3 cut(s)	258, 518, 619
BspT107I	GGYRCC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	384, 682
BssMI	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	384, 682
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	831
BstDEI	CTNAG	5 cut(s)	32, 301, 399, 705, 712
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	6 cut(s)	117, 180, 190, 253, 513, 614
BstMBI	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 206, 317
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	4 cut(s)	122, 486, 681, 731
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	260, 393, 636
BtuMI	TCGCGA	1 cut(s)	113
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	265, 730
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	5 cut(s)	118, 211, 454, 497, 835
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	5 cut(s)	32, 301, 399, 705, 712
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	6 cut(s)	116, 179, 189, 252, 512, 613
DpnII	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	384, 682
Eco147I	AGGCCT	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	384, 682
EcoT38I	GRGCYC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	384, 682
FaeI	CATG	5 cut(s)	121, 214, 457, 500, 838
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	5 cut(s)	117, 210, 453, 496, 834
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	129, 298, 591
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	129, 298, 591
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	129, 298, 591
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	122, 486, 681, 731
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	121, 214, 457, 500, 838
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	5 cut(s)	260, 526, 598, 633, 655
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	2 cut(s)	149, 172
Hpy166II	GTNNAC	2 cut(s)	157, 741
Hpy188I	TCNGA	7 cut(s)	17, 33, 104, 265, 664, 708, 828
Hpy188III	TCNNGA	4 cut(s)	112, 238, 248, 566
Hpy8I	GTNNAC	2 cut(s)	157, 741
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	88, 118
HpyCH4V	TGCA	3 cut(s)	320, 417, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 206, 317
HpyF3I	CTNAG	5 cut(s)	32, 301, 399, 705, 712
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	121, 214, 457, 500, 838
HspAI	GCGC	1 cut(s)	150
KasI	GGCGCC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	9 cut(s)	233, 306, 477, 521, 555, 579, 588, 615, 624
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	2 cut(s)	177, 655
MalI	GATC	6 cut(s)	116, 179, 189, 252, 512, 613
MboI	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
MboII	GAAGA	4 cut(s)	33, 43, 88, 521
MhlI	GDGCHC	2 cut(s)	141, 384
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	27, 233, 351, 480, 648
MluNI	TGGCCA	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	520, 607, 649
MnlI	CCTC	9 cut(s)	110, 194, 384, 516, 599, 602, 721, 775, 807
Mox20I	TGGCCA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	3 cut(s)	173, 221, 467
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 206, 317
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
NlaIII	CATG	5 cut(s)	121, 214, 457, 500, 838
NlaIV	GGNNCC	2 cut(s)	151, 267
NruI	TCGCGA	1 cut(s)	113
NspI	RCATGY	1 cut(s)	838
PceI	AGGCCT	1 cut(s)	681
PciI	ACATGT	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	260, 633
PflMI	CCANNNNNTGG	2 cut(s)	548, 572
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	130, 299, 592
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	3 cut(s)	520, 606, 649
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	3 cut(s)	520, 606, 649
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	151, 267
PspPI	GGNCC	2 cut(s)	265, 730
PvuI	CGATCG	1 cut(s)	190
RruI	TCGCGA	1 cut(s)	113
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	3 cut(s)	173, 221, 467
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	129, 298, 591
Sau3AI	GATC	6 cut(s)	114, 177, 187, 250, 510, 611
Sau96I	GGNCC	2 cut(s)	265, 730
SchI	GAGTC	3 cut(s)	520, 607, 649
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	141, 384
SfaNI	GCATC	2 cut(s)	177, 655
SfoI	GGCGCC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	3 cut(s)	173, 221, 467
Sse9I	AATT	5 cut(s)	27, 233, 351, 480, 648
SseBI	AGGCCT	1 cut(s)	681
SsiI	CCGC	3 cut(s)	126, 129, 590
SspDI	GGCGCC	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	384, 682
TaqI	TCGA	3 cut(s)	186, 291, 653
TasI	AATT	5 cut(s)	27, 233, 351, 480, 648
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	2 cut(s)	131, 593
TfiI	GAWTC	2 cut(s)	260, 633
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	260, 400, 643
TseI	GCWGC	1 cut(s)	297
TspDTI	ATGAA	3 cut(s)	33, 227, 442
TspRI	CASTG	3 cut(s)	260, 400, 643
Van91I	CCANNNNNTGG	2 cut(s)	548, 572
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	4 cut(s)	27, 233, 351, 648
XceI	RCATGY	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.