RchiOBHm_Chr2g0092761

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003536
Physical Location & Seq
Forward (+)
6115638 .. 6118230
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46784

Sequence Viewer

Length: 933 bp
ATGGGTACATTTCAGAGGACTGTTCTTACTATGCCAGAAAATGGTATTGGATTGTTTCCAGACATAGGTTTTTCACCTATAGCAGCACAAAAGTCCAGGAGAAGGATCTGTTGGGATGTTGTTCACAATGTCGTGCCTGCTATTGATGAAAGTCTACAAACAGGGGGCTTGATTATGGTTAAAGCTATTAAGCTAATGACATTGTTCAGGCCATCCCAAGTTCAACGGCAAGTCCAATTTTCCAACAATCTCTCCAGTAATGGAACGACAGCAATGAGGAACCTCTTGGACATCATTTATGTGCTCAATCTGATATTCATTCAGCTAGCTCTTGGTATGATGAGGGTGAAGAAACTTTGGATTGCTTCTCTTGGAATGACTGGGAAAAGAATTTCGACGCCATCGGATGTGCTATATGTTGGTCTTGGGACACATTTGGTGCCGTCTCAAAATTTAGGTTCAGTAAAGGAGGCCCTTTTGTCAATTAACTTTTCCCAGGATCCACATGAGGACATCAAAACGATTTTGGCCAAGTTCAACAGTAATCCTGATTCTGAATCCCAACTGAAGCAGTTTTTACCTCAAATAACCTCATCATTTGGTGCAAAAAAGTCAGTTATTGAGACAGTGAACTCTTCAAGAGGTCTTGGAAATGGGGCTCCTTTTTCACTTTTCTTGACACAGAAGTATCTCTTCAAAGTTGCATCTGCTCTTGGGAAGAATGACAATCAATTACCCACGAATCCAAAGTGGAACCCGTCAAGGTTGGAGGAAGTTAATGAGAGCGAAGTGGAAGCTCTGTTCGTACCATTGAGCCCAAACGTGGAGGAGTACTGTGACTGGCATTTTGAAAATGAACACGAGACTGGTTGTGCATGCCATTGGAATATATTGACTGATGATGCAAATAAGATAAACATATATACAAGATAA

Protein Analysis

310

Amino Acids

34.56

Weight (kDa)

7.69

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 124 - 210 1.2e-10 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 1 cut(s) 154
AclWI GGATC 3 cut(s) 113, 494, 507
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 2 cut(s) 390, 451
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 3 cut(s) 7, 807, 833
AfiI CCNNNNNNNGG 4 cut(s) 41, 65, 102, 823
AgsI TTSAA 5 cut(s) 224, 538, 639, 697, 851
AjnI CCWGG 2 cut(s) 95, 495
AjuI GAANNNNNNNTTGG 4 cut(s) 30, 62, 94, 126
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 5 cut(s) 185, 193, 325, 329, 797
AluI AGCT 5 cut(s) 185, 193, 325, 329, 797
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 450, 617, 857
AlwI GGATC 3 cut(s) 113, 494, 507
AoxI GGCC 3 cut(s) 209, 471, 528
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 390, 451
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 66, 358
AsuNHI GCTAGC 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 671, 704
BalI TGGCCA 1 cut(s) 530
BamHI GGATCC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 2 cut(s) 661, 818
BauI CACGAG 1 cut(s) 860
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 220, 409
BceAI ACGGC 2 cut(s) 242, 427
BciT130I CCWGG 2 cut(s) 97, 497
BcoDI GTCTC 3 cut(s) 450, 617, 857
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 833
Bme1390I CCNGG 2 cut(s) 97, 497
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 5 cut(s) 281, 441, 501, 660, 755
BmrFI CCNGG 2 cut(s) 97, 497
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 713, 892
BmtI GCTAGC 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 65, 102, 823
Bse1I ACTGG 4 cut(s) 255, 385, 845, 871
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 97, 497
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 121, 212, 412
BseLI CCNNNNNNNGG 4 cut(s) 41, 65, 102, 823
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 4 cut(s) 255, 385, 845, 871
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 3 cut(s) 211, 473, 530
BshNI GGYRCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 4 cut(s) 41, 65, 102, 823
BsmAI GTCTC 3 cut(s) 450, 617, 857
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 3 cut(s) 211, 473, 530
Bsp1286I GDGCHC 3 cut(s) 306, 661, 818
Bsp143I GATC 2 cut(s) 105, 499
BspANI GGCC 3 cut(s) 211, 473, 530
BspLI GGNNCC 5 cut(s) 281, 441, 501, 660, 755
BspOI GCTAGC 1 cut(s) 329
BspPI GGATC 3 cut(s) 113, 494, 507
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 4 cut(s) 255, 385, 845, 871
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 2 cut(s) 105, 499
BssNI GRCGYC 1 cut(s) 398
BssSI CACGAG 1 cut(s) 860
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 2 cut(s) 97, 497
Bst4CI ACNGT 4 cut(s) 22, 542, 628, 836
Bst6I CTCTTC 2 cut(s) 640, 698
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 138, 327, 877
BstF5I GGATG 3 cut(s) 121, 212, 412
BstKTI GATC 2 cut(s) 108, 502
BstMAI GTCTC 3 cut(s) 450, 617, 857
BstMBI GATC 2 cut(s) 105, 499
BstNI CCWGG 2 cut(s) 97, 497
BstNSI RCATGY 1 cut(s) 879
BstSCI CCNGG 2 cut(s) 95, 495
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 105, 499
BstYI RGATCY 2 cut(s) 105, 499
BsuRI GGCC 3 cut(s) 211, 473, 530
BtsCI GGATG 3 cut(s) 121, 212, 412
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 3 cut(s) 138, 327, 877
Cfr13I GGNCC 1 cut(s) 472
CseI GACGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 6, 806, 832
CviAII CATG 2 cut(s) 506, 876
CviQI GTAC 3 cut(s) 6, 806, 832
DpnI GATC 2 cut(s) 107, 501
DpnII GATC 2 cut(s) 105, 499
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 2 cut(s) 640, 698
EarI CTCTTC 2 cut(s) 640, 698
Eco24I GRGCYC 2 cut(s) 661, 818
Eco57I CTGAAG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 95, 495
EcoT38I GRGCYC 2 cut(s) 661, 818
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 2 cut(s) 509, 879
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FaqI GGGAC 1 cut(s) 442
FatI CATG 2 cut(s) 505, 875
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 128, 199, 419
FriOI GRGCYC 2 cut(s) 661, 818
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 3 cut(s) 211, 473, 530
HgaI GACGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 2 cut(s) 509, 879
HinfI GANTC 3 cut(s) 551, 557, 742
HphI GGTGA 2 cut(s) 66, 358
Hpy166II GTNNAC 3 cut(s) 124, 155, 631
Hpy188I TCNGA 4 cut(s) 15, 312, 406, 556
Hpy188III TCNNGA 4 cut(s) 59, 548, 639, 676
Hpy8I GTNNAC 3 cut(s) 124, 155, 631
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 4 cut(s) 22, 542, 628, 836
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 4 cut(s) 605, 704, 875, 905
HpySE526I ACGT 1 cut(s) 822
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 509, 879
Kzo9I GATC 2 cut(s) 105, 499
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 2 cut(s) 713, 892
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 1 cut(s) 836
MalI GATC 2 cut(s) 107, 501
MboI GATC 2 cut(s) 105, 499
MboII GAAGA 4 cut(s) 361, 627, 685, 730
MflI RGATCY 2 cut(s) 105, 499
MhlI GDGCHC 3 cut(s) 306, 661, 818
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 5 cut(s) 236, 390, 451, 483, 731
MluNI TGGCCA 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 267, 747
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 4 cut(s) 180, 189, 486, 777
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 530
MspR9I CCNGG 2 cut(s) 97, 497
MvaI CCWGG 2 cut(s) 97, 497
NdeII GATC 2 cut(s) 105, 499
NheI GCTAGC 1 cut(s) 325
NlaIII CATG 2 cut(s) 509, 879
NlaIV GGNNCC 5 cut(s) 281, 441, 501, 660, 755
NmuCI GTSAC 1 cut(s) 836
NspI RCATGY 1 cut(s) 879
PaeI GCATGC 1 cut(s) 879
PfeI GAWTC 3 cut(s) 551, 557, 742
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 95
PkrI GCNGC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 95, 495
PspGI CCWGG 2 cut(s) 95, 495
PspN4I GGNNCC 5 cut(s) 281, 441, 501, 660, 755
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 2 cut(s) 105, 499
RsaI GTAC 3 cut(s) 7, 807, 833
RsaNI GTAC 3 cut(s) 6, 806, 832
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 4 cut(s) 180, 189, 486, 777
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 105, 499
Sau96I GGNCC 1 cut(s) 472
ScaI AGTACT 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 97, 497
SduI GDGCHC 3 cut(s) 306, 661, 818
SfaNI GCATC 2 cut(s) 713, 892
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 299
SphI GCATGC 1 cut(s) 879
Sse9I AATT 5 cut(s) 236, 390, 451, 483, 731
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 95, 495
TaaI ACNGT 4 cut(s) 22, 542, 628, 836
TaiI ACGT 1 cut(s) 825
TaqI TCGA 1 cut(s) 395
TasI AATT 5 cut(s) 236, 390, 451, 483, 731
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 3 cut(s) 551, 557, 742
Tru1I TTAA 4 cut(s) 180, 189, 486, 777
Tru9I TTAA 4 cut(s) 180, 189, 486, 777
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 3 cut(s) 162, 307, 870
TspRI CASTG 1 cut(s) 633
Van91I CCANNNNNTGG 1 cut(s) 41
XapI RAATTY 2 cut(s) 390, 451
XceI RCATGY 1 cut(s) 879
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 1 cut(s) 326
ZrmI AGTACT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.