MD02G1056500.v1.1

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
4571258 .. 4575178
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1056500.v1.1.491

Sequence Viewer

Length: 1266 bp
ATGCGAAGTTTGTTCGGCGGAGCGACCCAAATTCTGAGCAAATCGTCGTCCGCTTTCTTCTTCCTCAATCCAAATTGGAAGCTCTCTCTTTGCGAACCGGGGTCCAAATCCCCTCGCCTTCTCCGCACCTTCGCGATCATGGCCTCCGCGGACGAGTTCGTCAAGGGCAGCGTCCACCCAAATGGCGTCGCCGTCATCACCCTGGATCGCCCCCGAGCTCTCAATGCCATGAACCTAGATATGGATGTGATATACAAGAGCTATCTGGATGAATGGGAATCTGACCCAAATGTGAAGTGTGTTCTTGTTGATAGCAGCTCGGCTCGTGCCTTTTGTGCCGGCGGTGATGTGAAGCAGATAACGGCCAAAAACCAACTACCGGATATGATTGAGGTATTCACTGCTGAGTATTCTCTAATATGCAAAATCTCTGAGTACAAGAAGCCCTATATAAGCTTCATGGATGGCATAACAATGGGCTTTGGTATTGGCCTATCAGGTCACGGTCGCTACCGGATCATTACAGAGAGGACTGTTCTTGCTATGCCAGAGAATGGAATTGGTTTGTTCCCAGATGTTGGGTTTTCACATATAGCGGCAAAGAGTCCTGGAGGAGGATCTGTAGGTGCTTATCTTGGACTTACTGGGAAAAGGATTTCAACACCATCGGATGCACTATATGTGGGTCTTGGGACACATTTTGTCCCATCTCAAAACTTAGGTTCTTTAAAGGAGGCCCTTTTGTCTACCAAATTTTCCCAGGATCCCCATCAGGACGTTGAAACAGCTGTGGCAAAATTCAGCAGCAACCCAGATTCTGAAGCGCAACTCAAGAATCTTTTACCTCGAATAACTTCAGCATTTGGTGCAAATAAGTCGGTTCTTGAGACAATTGATGAACTTAAAAAGCAGCAGCAGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTTTATTTGACACAAAATTATTTCTCCAAAGTTGCATCTGCGCTTGGGAAAAATGACAATCAATTATCCACATTAACTGGTGTGATGAAAACTGAATATCGCGTTGCTGTAAGATCGTCTTTGAGGAATGATTTTGCTGAAGGTGTGCGGGCAGTTTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGGCAAAGTTAGAGGAGGTGAATCGGAGTGAAGTGGAAGCTCTCTTCGAGCCATTGAGCCCGAACGTTGAGGAGTTGAGTGTGTGA

Protein Analysis

422

Amino Acids

45.76

Weight (kDa)

6.05

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 60 - 266 2.7e-24 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 64 - 409 1.9e-106 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 554, 578
AccI GTMKAC 1 cut(s) 746
AccII CGCG 3 cut(s) 134, 149, 1092
AciI CCGC 8 cut(s) 18, 51, 124, 147, 149, 342, 596, 1138
AclI AACGTT 1 cut(s) 1245
AclWI GGATC 6 cut(s) 213, 524, 625, 758, 771, 1167
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 3 cut(s) 30, 752, 797
AcuI CTGAAG 3 cut(s) 840, 840, 1149
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 5 cut(s) 241, 379, 554, 578, 614
AgsI TTSAA 3 cut(s) 660, 782, 962
AjnI CCWGG 3 cut(s) 201, 607, 759
AluBI AGCT 8 cut(s) 82, 218, 261, 318, 456, 788, 956, 1220
AluI AGCT 8 cut(s) 82, 218, 261, 318, 456, 788, 956, 1220
Alw21I GWGCWC 2 cut(s) 220, 982
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 6 cut(s) 213, 524, 625, 758, 771, 1167
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 4 cut(s) 141, 363, 490, 735
ApeKI GCWGC 5 cut(s) 168, 315, 804, 910, 913
ApoI RAATTY 3 cut(s) 30, 752, 797
Asp700I GAANNNNTTC 2 cut(s) 853, 957
AspLEI GCGC 2 cut(s) 826, 1033
AspS9I GGNCC 2 cut(s) 102, 736
AsuC2I CCSGG 2 cut(s) 99, 1181
AsuHPI GGTGA 3 cut(s) 190, 356, 1210
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 102
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 2 cut(s) 220, 1241
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 220, 982
BbvI GCAGC 5 cut(s) 180, 327, 816, 922, 925
BccI CCATC 4 cut(s) 458, 673, 715, 777
BceAI ACGGC 2 cut(s) 176, 378
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 3 cut(s) 203, 609, 761
BcnI CCSGG 2 cut(s) 99, 1181
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 621
BisI GCNGC 6 cut(s) 169, 316, 597, 805, 911, 914
BlsI GCNGC 6 cut(s) 170, 317, 598, 806, 912, 915
Bme1390I CCNGG 5 cut(s) 99, 203, 609, 761, 1181
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 102, 736
BmiI GGNNCC 3 cut(s) 103, 765, 1178
BmrFI CCNGG 5 cut(s) 99, 203, 609, 761, 1181
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 3 cut(s) 661, 916, 1034
BmuI ACTGGG 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 815, 905
BpuMI CCSGG 2 cut(s) 99, 1181
BsaBI GATNNNNATC 2 cut(s) 768, 1164
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 98, 147, 201, 759
BsaWI WCCGGW 2 cut(s) 379, 513
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 379, 554, 578, 614
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 649, 1072
Bse8I GATNNNNATC 2 cut(s) 768, 1164
BseBI CCWGG 3 cut(s) 203, 609, 761
BseDI CCNNGG 4 cut(s) 98, 147, 201, 759
BseGI GGATG 4 cut(s) 250, 274, 469, 676
BseJI GATNNNNATC 2 cut(s) 768, 1164
BseLI CCNNNNNNNGG 5 cut(s) 241, 379, 554, 578, 614
BseMII CTCAG 3 cut(s) 26, 396, 423
BseNI ACTGG 2 cut(s) 649, 1072
BseRI GAGGAG 3 cut(s) 627, 1208, 1265
BseXI GCAGC 5 cut(s) 180, 327, 816, 922, 925
Bsh1236I CGCG 3 cut(s) 134, 149, 1092
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 4 cut(s) 143, 365, 492, 737
BsiEI CGRYCG 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 220, 982
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 5 cut(s) 98, 339, 380, 514, 1181
BslFI GGGAC 2 cut(s) 689, 706
BslI CCNNNNNNNGG 5 cut(s) 241, 379, 554, 578, 614
BsmAI GTCTC 1 cut(s) 881
BsmFI GGGAC 2 cut(s) 689, 706
BsnI GGCC 4 cut(s) 143, 365, 492, 737
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 220, 982, 1241
Bsp143I GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
Bsp68I TCGCGA 1 cut(s) 134
BspACI CCGC 8 cut(s) 18, 51, 124, 147, 149, 342, 596, 1138
BspANI GGCC 4 cut(s) 143, 365, 492, 737
BspCNI CTCAG 3 cut(s) 27, 397, 424
BspFNI CGCG 3 cut(s) 134, 149, 1092
BspLI GGNNCC 3 cut(s) 103, 765, 1178
BspPI GGATC 6 cut(s) 213, 524, 625, 758, 771, 1167
BspQI GCTCTTC 1 cut(s) 963
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 2 cut(s) 649, 1072
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 4 cut(s) 98, 147, 201, 759
BssMI GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst2UI CCWGG 3 cut(s) 203, 609, 761
Bst4CI ACNGT 3 cut(s) 506, 535, 934
Bst6I CTCTTC 2 cut(s) 963, 1229
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 866
BstC8I GCNNGC 2 cut(s) 340, 1140
BstDEI CTNAG 4 cut(s) 35, 405, 432, 718
BstDSI CCRYGG 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 612
BstF5I GGATG 4 cut(s) 250, 274, 469, 676
BstFNI CGCG 3 cut(s) 134, 149, 1092
BstHHI GCGC 2 cut(s) 826, 1033
BstKTI GATC 7 cut(s) 138, 208, 519, 620, 766, 1106, 1162
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 6 cut(s) 123, 140, 224, 335, 866, 953
BstNI CCWGG 3 cut(s) 203, 609, 761
BstSCI CCNGG 5 cut(s) 97, 201, 607, 759, 1179
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 3 cut(s) 134, 149, 1092
BstV1I GCAGC 5 cut(s) 180, 327, 816, 922, 925
BstX2I RGATCY 2 cut(s) 617, 763
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 2 cut(s) 617, 763
BsuRI GGCC 4 cut(s) 143, 365, 492, 737
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 4 cut(s) 250, 274, 469, 676
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
BtuMI TCGCGA 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 340, 1140
CaiI CAGNNNCTG 1 cut(s) 818
CfoI GCGC 2 cut(s) 826, 1033
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 102, 736
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 2 cut(s) 160, 175
Csp6I GTAC 1 cut(s) 436
CviAII CATG 3 cut(s) 139, 229, 460
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 4 cut(s) 35, 405, 432, 718
DpnI GATC 7 cut(s) 137, 207, 518, 619, 765, 1105, 1161
DpnII GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
DraI TTTAAA 1 cut(s) 729
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 963, 1229
EarI CTCTTC 2 cut(s) 963, 1229
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 220, 1241
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 3 cut(s) 840, 840, 1149
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 736
EcoRII CCWGG 3 cut(s) 201, 607, 759
EcoT38I GRGCYC 2 cut(s) 220, 1241
FaeI CATG 3 cut(s) 142, 232, 463
FalI AAGNNNNNCTT 2 cut(s) 1093, 1125
FaqI GGGAC 2 cut(s) 689, 706
FatI CATG 3 cut(s) 138, 228, 459
FauI CCCGC 1 cut(s) 1131
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 6 cut(s) 169, 316, 597, 805, 911, 914
FokI GGATG 4 cut(s) 257, 281, 476, 683
FriOI GRGCYC 2 cut(s) 220, 1241
Fsp4HI GCNGC 6 cut(s) 169, 316, 597, 805, 911, 914
FspBI CTAG 1 cut(s) 236
GlaI GCGC 2 cut(s) 825, 1032
GluI GCNGC 6 cut(s) 169, 316, 597, 805, 911, 914
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 4 cut(s) 143, 365, 492, 737
HapII CCGG 5 cut(s) 98, 339, 380, 514, 1181
HgaI GACGC 2 cut(s) 160, 175
HhaI GCGC 2 cut(s) 826, 1033
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 142, 232, 463
Hin6I GCGC 2 cut(s) 824, 1031
HinP1I GCGC 2 cut(s) 824, 1031
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 6 cut(s) 278, 604, 815, 835, 1165, 1201
HpaII CCGG 5 cut(s) 98, 339, 380, 514, 1181
HphI GGTGA 3 cut(s) 190, 356, 1210
Hpy166II GTNNAC 3 cut(s) 175, 747, 1153
Hpy188I TCNGA 8 cut(s) 36, 283, 433, 670, 820, 925, 1164, 1206
Hpy188III TCNNGA 5 cut(s) 133, 266, 773, 832, 884
Hpy8I GTNNAC 3 cut(s) 175, 747, 1153
Hpy99I CGWCG 2 cut(s) 49, 191
HpyAV CCTTC 3 cut(s) 128, 139, 1124
HpyCH4III ACNGT 3 cut(s) 506, 535, 934
HpyCH4IV ACGT 2 cut(s) 777, 1245
HpyCH4V TGCA 4 cut(s) 423, 674, 869, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 140, 224, 335, 866, 953
HpyF3I CTNAG 4 cut(s) 35, 405, 432, 718
HpySE526I ACGT 2 cut(s) 777, 1245
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 142, 232, 463
HspAI GCGC 2 cut(s) 824, 1031
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 2 cut(s) 20, 985
Lsp1109I GCAGC 5 cut(s) 180, 327, 816, 922, 925
LweI GCATC 3 cut(s) 661, 916, 1034
MaeI CTAG 1 cut(s) 236
MaeII ACGT 2 cut(s) 777, 1245
MaeIII GTNAC 1 cut(s) 500
MalI GATC 7 cut(s) 137, 207, 518, 619, 765, 1105, 1161
MboI GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
MboII GAAGA 4 cut(s) 49, 52, 950, 1216
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 2 cut(s) 617, 763
MhlI GDGCHC 3 cut(s) 220, 982, 1241
MluCI AATT 8 cut(s) 30, 73, 558, 752, 797, 891, 1006, 1052
MlyI GAGTC 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 2 cut(s) 853, 957
MseI TTAA 3 cut(s) 728, 903, 1064
MslI CAYNNNNRTG 2 cut(s) 180, 473
MspA1I CMGCKG 2 cut(s) 149, 788
MspI CCGG 5 cut(s) 98, 339, 380, 514, 1181
MspR9I CCNGG 5 cut(s) 99, 203, 609, 761, 1181
MunI CAATTG 1 cut(s) 891
MvaI CCWGG 3 cut(s) 203, 609, 761
MvnI CGCG 3 cut(s) 134, 149, 1092
MwoI GCNNNNNNNGC 6 cut(s) 123, 140, 224, 335, 866, 953
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 2 cut(s) 99, 1181
NdeII GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 142, 232, 463
NlaIV GGNNCC 3 cut(s) 103, 765, 1178
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 500
NruI TCGCGA 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 963
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 2 cut(s) 853, 957
PfeI GAWTC 5 cut(s) 278, 815, 835, 1165, 1201
PflMI CCANNNNNTGG 2 cut(s) 554, 578
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 6 cut(s) 170, 317, 598, 806, 912, 915
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 1245
Psp6I CCWGG 3 cut(s) 201, 607, 759
PspGI CCWGG 3 cut(s) 201, 607, 759
PspN4I GGNNCC 3 cut(s) 103, 765, 1178
PspPI GGNCC 2 cut(s) 102, 736
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 617, 763
PvuII CAGCTG 1 cut(s) 788
RruI TCGCGA 1 cut(s) 134
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 180, 473
SacI GAGCTC 1 cut(s) 220
SacII CCGCGG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 3 cut(s) 728, 903, 1064
SatI GCNGC 6 cut(s) 169, 316, 597, 805, 911, 914
Sau3AI GATC 7 cut(s) 135, 205, 516, 617, 763, 1103, 1159
Sau96I GGNCC 2 cut(s) 102, 736
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 5 cut(s) 99, 203, 609, 761, 1181
SduI GDGCHC 3 cut(s) 220, 982, 1241
SfaNI GCATC 3 cut(s) 661, 916, 1034
SfcI CTRYAG 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 180, 473
SmlI CTYRAG 2 cut(s) 830, 884
SmoI CTYRAG 2 cut(s) 830, 884
Sse9I AATT 8 cut(s) 30, 73, 558, 752, 797, 891, 1006, 1052
SsiI CCGC 8 cut(s) 18, 51, 124, 147, 149, 342, 596, 1138
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 5 cut(s) 97, 201, 607, 759, 1179
TaaI ACNGT 3 cut(s) 506, 535, 934
TaiI ACGT 2 cut(s) 780, 1248
TaqI TCGA 2 cut(s) 847, 1227
TasI AATT 8 cut(s) 30, 73, 558, 752, 797, 891, 1006, 1052
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 5 cut(s) 278, 815, 835, 1165, 1201
Tru1I TTAA 3 cut(s) 728, 903, 1064
Tru9I TTAA 3 cut(s) 728, 903, 1064
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 5 cut(s) 168, 315, 804, 910, 913
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 6 cut(s) 245, 285, 448, 912, 966, 1091
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 2 cut(s) 554, 578
VpaK11BI GGWCC 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 612
XapI RAATTY 3 cut(s) 30, 752, 797
XmiI GTMKAC 1 cut(s) 746
XmnI GAANNNNTTC 2 cut(s) 853, 957
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.