Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Reverse (-)

20088319 .. 20091957

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCAAAGCTTATTCGGAGCTACCCAAACTCTGAGCAAATCGTCCGCTTTCTTCTTCCTCAACTCAAATTCGAAGCTCTCTCTGTGCAAAGCCTCCAAAACCCCTCTCCTTCTCCGAACATTCGCGATCATGGCCAGCGCCGATGAGTTCGTCAAGGGTAGCGTTCACCCAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAGAGCTCTCAACGCCATGAACATAGATATGGATGTTAAATACAAAAGTTATCTGGATGAATGGGAATCAGACCCAAATGTGAAGTGCGTTTTGGTTGATAGCAGCTCAGCTCGTGCGTTTTGTGCGGGAATGGATATTAAAGGGGTTGTTGCTGAAATCCAAAAGGACAAAAACACACCTCTTGTGCCGAAGGTATTCACTGCTGAGTATTCTCTGATATGCAAAATCTCTGAGTACAAGAAGCCCTATGTAAGTTTCATGGATGGCATTACAATGGGATTTGGAATTGGCCTATCAGGTCATGGTCGCTACCGGATCATTACAGAGAGGACTCTTCTTGCTATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTTGGGTTTTCACACATAGCGGCTAAGAGTCCAGGAGGAGGATCTGTTGGTGTTTATCTTGGACTGACTGGGAAAAGGATTTCAACACCATCAGATGCACTATATGTAGGCCTCGGGACACATTTTGTGCCATCTCAAAACTTAGGTTTACTAAAGGAGGCCCTTTTGTCAACCAACTTTTCCCAAGATCCACATCAGGATATTGAAACAACTTTGGGGAAATTCAGCAGCAACCCTGATTCTGAAGCCCAATTAAGGTTGCTTTTGCCTCAAATAACTTCAGCATTTGGTGCAAATAAGTCGGTTCTTGAGACAATTGATGAACTTAAAAAGCATCAACAGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCCTTTTCACTTTACTTGACACAAAAGTATTTCTCCAGAGTTGCATCTGCACTGGGGAAAAATGACAATCAATTATCCACATTAACTGGTGTGATGAAAACTGAATATCGCATCGCCTTAAGATCGTCTTTGCGGAATGACTTTGCCGAAGGCGTGCGGGCAGTTTTGGTGGACAAGGACCAGAATCCGAAGTGGAACCCGTCAAAGTTAGAGGAGGTTAATGAGAGTGAAGTGGAATCTCTGTTCGAACCATTGAGCCCAAACGTTGGGGAGTTGAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

423

Amino Acids

45.88

Weight (kDa)

6.35

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	557, 581, 1250
AccII	CGCG	1 cut(s)	125
AciI	CCGC	5 cut(s)	45, 329, 599, 1117, 1141
AclI	AACGTT	1 cut(s)	1248
AclWI	GGATC	3 cut(s)	527, 628, 761
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	67, 800
AcuI	CTGAAG	2 cut(s)	843, 843
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	5 cut(s)	557, 581, 617, 834, 1250
AflII	CTTAAG	1 cut(s)	1102
AgsI	TTSAA	3 cut(s)	663, 785, 965
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	4 cut(s)	278, 310, 546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	1211, 1243
AluBI	AGCT	7 cut(s)	9, 20, 76, 209, 309, 314, 959
AluI	AGCT	7 cut(s)	9, 20, 76, 209, 309, 314, 959
Alw21I	GWGCWC	2 cut(s)	211, 985
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	3 cut(s)	527, 628, 761
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	4 cut(s)	132, 493, 688, 738
ApeKI	GCWGC	2 cut(s)	306, 807
ApoI	RAATTY	2 cut(s)	67, 800
Asp700I	GAANNNNTTC	2 cut(s)	398, 960
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	739, 1162
AsuHPI	GGTGA	2 cut(s)	158, 181
AsuII	TTCGAA	2 cut(s)	71, 1230
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	1162
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	211, 1244
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	211, 985
BbvI	GCAGC	2 cut(s)	318, 819
BccI	CCATC	3 cut(s)	461, 676, 718
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	861, 895
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	1102
BisI	GCNGC	3 cut(s)	307, 600, 808
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	3 cut(s)	308, 601, 809
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	1162
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	739, 1162
BmiI	GGNNCC	1 cut(s)	1181
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	2 cut(s)	657, 1046
BmsI	GCATC	5 cut(s)	664, 919, 922, 1037, 1104
BmuI	ACTGGG	2 cut(s)	657, 1046
BpmI	CTGGAG	1 cut(s)	1003
Bpu1102I	GCTNAGC	1 cut(s)	310
Bpu14I	TTCGAA	2 cut(s)	71, 1230
BpuEI	CTTGAG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	557, 581, 617, 834, 1250
Bse1I	ACTGG	3 cut(s)	652, 1041, 1075
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	3 cut(s)	241, 265, 472
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	5 cut(s)	557, 581, 617, 834, 1250
BseMII	CTCAG	4 cut(s)	23, 324, 399, 426
BseNI	ACTGG	3 cut(s)	652, 1041, 1075
BseRI	GAGGAG	2 cut(s)	630, 1211
BseXI	GCAGC	2 cut(s)	318, 819
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	134, 495, 690, 740
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	211, 985
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	5 cut(s)	557, 581, 617, 834, 1250
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	709
BsnI	GGCC	4 cut(s)	134, 495, 690, 740
BsoBI	CYCGRG	1 cut(s)	692
Bsp119I	TTCGAA	2 cut(s)	71, 1230
Bsp1286I	GDGCHC	3 cut(s)	211, 985, 1244
Bsp143I	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
Bsp1720I	GCTNAGC	1 cut(s)	310
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	5 cut(s)	45, 329, 599, 1117, 1141
BspANI	GGCC	4 cut(s)	134, 495, 690, 740
BspCNI	CTCAG	4 cut(s)	24, 323, 400, 427
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	1181
BspPI	GGATC	3 cut(s)	527, 628, 761
BspQI	GCTCTTC	1 cut(s)	966
BspT104I	TTCGAA	2 cut(s)	71, 1230
BspTI	CTTAAG	1 cut(s)	1102
BsrI	ACTGG	3 cut(s)	652, 1041, 1075
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	2 cut(s)	543, 966
BstACI	GRCGYC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	1102
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstBI	TTCGAA	2 cut(s)	71, 1230
BstC8I	GCNNGC	3 cut(s)	136, 1139, 1143
BstDEI	CTNAG	6 cut(s)	32, 310, 408, 435, 603, 721
BstF5I	GGATG	3 cut(s)	241, 265, 472
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	6 cut(s)	129, 199, 522, 623, 769, 1109
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 215, 326, 869, 956
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	318, 819
BstX2I	RGATCY	2 cut(s)	620, 766
BstYI	RGATCY	2 cut(s)	620, 766
BsuRI	GGCC	4 cut(s)	134, 495, 690, 740
BtgZI	GCGATG	1 cut(s)	1081
BtsCI	GGATG	3 cut(s)	241, 265, 472
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	402, 1034
BtuMI	TCGCGA	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	136, 1139, 1143
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	739, 1162
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	4 cut(s)	130, 220, 463, 506
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	6 cut(s)	32, 310, 408, 435, 603, 721
DpnI	GATC	6 cut(s)	128, 198, 521, 622, 768, 1108
DpnII	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	543, 966
EarI	CTCTTC	2 cut(s)	543, 966
Ecl136II	GAGCTC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	211, 1244
Eco47I	GGWCC	1 cut(s)	1162
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	843, 843
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	610
EcoT38I	GRGCYC	2 cut(s)	211, 1244
FaeI	CATG	4 cut(s)	133, 223, 466, 509
FalI	AAGNNNNNCTT	2 cut(s)	1096, 1128
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	4 cut(s)	129, 219, 462, 505
FauI	CCCGC	2 cut(s)	322, 1134
Fnu4HI	GCNGC	3 cut(s)	307, 600, 808
FokI	GGATG	3 cut(s)	248, 272, 479
FriOI	GRGCYC	2 cut(s)	211, 1244
Fsp4HI	GCNGC	3 cut(s)	307, 600, 808
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	307, 600, 808
GsuI	CTGGAG	1 cut(s)	1003
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	134, 495, 690, 740
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	133, 223, 466, 509
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	6 cut(s)	269, 535, 607, 818, 1168, 1220
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	2 cut(s)	158, 181
Hpy166II	GTNNAC	4 cut(s)	166, 728, 750, 1156
Hpy188III	TCNNGA	6 cut(s)	124, 257, 694, 776, 887, 1020
Hpy8I	GTNNAC	4 cut(s)	166, 728, 750, 1156
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	119, 388, 1127
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4IV	ACGT	1 cut(s)	1248
HpyCH4V	TGCA	7 cut(s)	4, 87, 426, 677, 872, 1028, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 215, 326, 869, 956
HpyF3I	CTNAG	6 cut(s)	32, 310, 408, 435, 603, 721
HpySE526I	ACGT	1 cut(s)	1248
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	133, 223, 466, 509
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	17, 988
Lsp1109I	GCAGC	2 cut(s)	318, 819
LweI	GCATC	5 cut(s)	664, 919, 922, 1037, 1104
MaeII	ACGT	1 cut(s)	1248
MalI	GATC	6 cut(s)	128, 198, 521, 622, 768, 1108
MboI	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
MboII	GAAGA	4 cut(s)	43, 46, 530, 953
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	2 cut(s)	620, 766
MhlI	GDGCHC	3 cut(s)	211, 985, 1244
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	7 cut(s)	67, 489, 561, 800, 830, 894, 1055
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	529, 616
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	398, 960
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	7 cut(s)	240, 342, 833, 906, 1067, 1103, 1203
MslI	CAYNNNNRTG	2 cut(s)	230, 476
Msp20I	TGGCCA	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	1102
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	5 cut(s)	131, 215, 326, 869, 956
NdeII	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
NlaIII	CATG	4 cut(s)	133, 223, 466, 509
NlaIV	GGNNCC	1 cut(s)	1181
NruI	TCGCGA	1 cut(s)	125
NspV	TTCGAA	2 cut(s)	71, 1230
PceI	AGGCCT	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	966
PdmI	GAANNNNTTC	2 cut(s)	398, 960
PfeI	GAWTC	4 cut(s)	269, 818, 1168, 1220
PflMI	CCANNNNNTGG	3 cut(s)	557, 581, 1250
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	308, 601, 809
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	2 cut(s)	529, 615
PpsI	GAGTC	2 cut(s)	529, 615
Psp124BI	GAGCTC	1 cut(s)	211
Psp1406I	AACGTT	1 cut(s)	1248
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	1181
PspPI	GGNCC	2 cut(s)	739, 1162
PsuI	RGATCY	2 cut(s)	620, 766
PvuI	CGATCG	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	2 cut(s)	230, 476
SacI	GAGCTC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	7 cut(s)	240, 342, 833, 906, 1067, 1103, 1203
SatI	GCNGC	3 cut(s)	307, 600, 808
Sau3AI	GATC	6 cut(s)	126, 196, 519, 620, 766, 1106
Sau96I	GGNCC	2 cut(s)	739, 1162
SchI	GAGTC	2 cut(s)	529, 616
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	3 cut(s)	211, 985, 1244
SfaNI	GCATC	5 cut(s)	664, 919, 922, 1037, 1104
SfuI	TTCGAA	2 cut(s)	71, 1230
SinI	GGWCC	1 cut(s)	1162
SmiMI	CAYNNNNRTG	2 cut(s)	230, 476
SmlI	CTYRAG	2 cut(s)	887, 1102
SmoI	CTYRAG	2 cut(s)	887, 1102
Sse9I	AATT	7 cut(s)	67, 489, 561, 800, 830, 894, 1055
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	5 cut(s)	45, 329, 599, 1117, 1141
SstI	GAGCTC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	937
TaiI	ACGT	1 cut(s)	1251
TaqI	TCGA	3 cut(s)	71, 195, 1230
TasI	AATT	7 cut(s)	67, 489, 561, 800, 830, 894, 1055
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	4 cut(s)	269, 818, 1168, 1220
Tru1I	TTAA	7 cut(s)	240, 342, 833, 906, 1067, 1103, 1203
Tru9I	TTAA	7 cut(s)	240, 342, 833, 906, 1067, 1103, 1203
TscAI	CASTG	2 cut(s)	409, 1041
TseI	GCWGC	2 cut(s)	306, 807
TspDTI	ATGAA	6 cut(s)	236, 276, 451, 915, 969, 1094
TspRI	CASTG	2 cut(s)	409, 1041
Van91I	CCANNNNNTGG	3 cut(s)	557, 581, 1250
Vha464I	CTTAAG	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	1162
XapI	RAATTY	2 cut(s)	67, 800
XmnI	GAANNNNTTC	2 cut(s)	398, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.