MD02G1052700.v1.1

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0003536
Physical Location & Seq
Reverse (-)
4313953 .. 4323091
9139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1052700.v1.1.491

Sequence Viewer

Length: 168 bp
ATGAATGGGAAGTGTGTTCTTGTTGATAGCTGTTCGGCTCATGCCTTTTGTGGCGGCGGTGATGTGAAGCAGATCACGGCCAAAAACCAACCACCGAATATGATTGAGGTATTCACTGCTGAGTATTCTCTAATATGCAATATCTCCGAGTACAAGAAGCCCATATAA

Protein Analysis

56

Amino Acids

5.96

Weight (kDa)

6.51

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 4 - 55 1e-09 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 57
AcoI YGGCCR 1 cut(s) 78
AfaI GTAC 1 cut(s) 152
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AoxI GGCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 71
BceAI ACGGC 1 cut(s) 93
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BseMII CTCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 80
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 2 cut(s) 54, 57
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 112
BssMI GATC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 80
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 41
CviJI RGCY 4 cut(s) 30, 38, 80, 160
CviKI_1 RGCY 4 cut(s) 30, 38, 80, 160
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 78
FaeI CATG 1 cut(s) 44
FaiI YATR 5 cut(s) 42, 101, 136, 164, 166
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 1 cut(s) 44
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 72
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MnlI CCTC 1 cut(s) 100
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 56
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 72
SetI ASST 2 cut(s) 32, 111
SgeI CNNG 4 cut(s) 32, 53, 88, 160
SsiI CCGC 2 cut(s) 54, 57
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 57
TscAI CASTG 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.