Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Forward (+)

11926409 .. 11929833

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCCTCCGCCGACGAGTTCATCAAGGGCAGTGTCCACCCGAACGGCGTCGCAGTCATCACCCTCGATCGCCCCCGAGCTCTCAACGCTATGAACCTAGATATGGATGTGAAATACAAAAGCTATCTGGATGAATGGGAATCGGACCCGAGTGTGAAGTGTGTTCTTGTCGATAGCAGCTCGGCTCGTGCCTTTTGTGCTGGAATGGATATTAAAGGGGTTGTTGCCGAAATTCAAAAGGACAAAAACACACCTCTTGTGCCGAAGGTATTCACTGCTGAGTATTCTCTAATATGTAAAATATCTGAGTACAAGAAGCCCTATATAAGCATCATGGATGGCATAACAATGGGCTTTGGTATTGGCCTATCAGGTCATGGTCGCTACCGGATCATTACAGAGAGAACTATACTTGCTATGCCAGAGAATGGAATTGGTTTGTTTCCAGATGTTGGCTTTTCACATATTGCGGCAAAGAGTCCAGGAGGAGGATCTGTAGGTGCTTATCTTGGACTGACTGGTAAAAGGATTTCAACACCATCGGATGCACTATATGTGGGACTTGGGACACATTTTGTCCCATCTCAAAACTTAGGTTCTCTAAAGGAGGCCCTTTTGTCAACCAACTTTTCCCAGGATCCACATCAGGACATCGAAACAACTTTGGCGAAATTCAGCAGCAAGCCAGATTCTGAACCCCAACTTAGGTCGCTGCTGCCTCCAATAACTTCAGCATTTGGTGCAAATAAGTCAGTTGTCGAGACAATTGATGAACTTAAAAAGCAGCAGCAGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTATACTTGACGCAAAATTATTTCTCCAAGGTTGCATCTGCGCTTGGGAAAAATGAGAATCAATTATCCACATTAACAGGTGTGATGAAAATTGAATATCGTGTTGCTATAAGATCGTCTTTGCGGAGTGATTTTGCTGAAGGTGTGCGGGCAGTTTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGTCAAAGTTAGAAGAGGTTAATCAAAGCGAAGTTGAAGCTCTAGTCGAGCCATTGAGCCCGAACGTTGAGGAGTTGAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

380

Amino Acids

41.04

Weight (kDa)

5.44

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	428, 452
AciI	CCGC	4 cut(s)	9, 470, 988, 1012
AclI	AACGTT	1 cut(s)	1119
AclWI	GGATC	5 cut(s)	398, 499, 632, 645, 1041
AcsI	RAATTY	2 cut(s)	231, 671
AcuI	CTGAAG	2 cut(s)	714, 1023
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	5 cut(s)	103, 428, 452, 488, 705
AgsI	TTSAA	5 cut(s)	236, 534, 836, 959, 1091
AjnI	CCWGG	2 cut(s)	481, 633
AluBI	AGCT	5 cut(s)	80, 123, 180, 830, 1094
AluI	AGCT	5 cut(s)	80, 123, 180, 830, 1094
Alw21I	GWGCWC	2 cut(s)	82, 856
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	5 cut(s)	398, 499, 632, 645, 1041
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	2 cut(s)	75, 148
AoxI	GGCC	3 cut(s)	3, 364, 609
ApeKI	GCWGC	6 cut(s)	177, 678, 712, 715, 784, 787
ApoI	RAATTY	2 cut(s)	231, 671
Asp700I	GAANNNNTTC	2 cut(s)	269, 831
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	2 cut(s)	145, 610
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	2 cut(s)	75, 148
AvaII	GGWCC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	82, 1115
BauI	CACGAG	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	82, 856
BbvI	GCAGC	6 cut(s)	189, 690, 699, 702, 796, 799
BccI	CCATC	3 cut(s)	332, 547, 589
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	483, 635
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	2 cut(s)	98, 1097
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	7 cut(s)	178, 471, 679, 713, 716, 785, 788
BlsI	GCNGC	7 cut(s)	179, 472, 680, 714, 717, 786, 789
Bme1390I	CCNGG	2 cut(s)	483, 635
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	2 cut(s)	75, 148
BmgT120I	GGNCC	2 cut(s)	145, 610
BmiI	GGNNCC	3 cut(s)	147, 639, 1052
BmrFI	CCNGG	2 cut(s)	483, 635
BmsI	GCATC	4 cut(s)	339, 535, 790, 908
BsaBI	GATNNNNATC	2 cut(s)	642, 1038
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	633, 891
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 428, 452, 488, 705
Bse1I	ACTGG	1 cut(s)	523
Bse8I	GATNNNNATC	2 cut(s)	642, 1038
BseBI	CCWGG	2 cut(s)	483, 635
BseDI	CCNNGG	2 cut(s)	633, 891
BseGI	GGATG	4 cut(s)	112, 136, 343, 550
BseJI	GATNNNNATC	2 cut(s)	642, 1038
BseLI	CCNNNNNNNGG	5 cut(s)	103, 428, 452, 488, 705
BseMII	CTCAG	2 cut(s)	270, 297
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	2 cut(s)	501, 1139
BseXI	GCAGC	6 cut(s)	189, 690, 699, 702, 796, 799
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	5, 366, 611
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	82, 856
BsiHKCI	CYCGRG	2 cut(s)	75, 148
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	3 cut(s)	563, 573, 580
BslI	CCNNNNNNNGG	5 cut(s)	103, 428, 452, 488, 705
BsmAI	GTCTC	1 cut(s)	755
BsmFI	GGGAC	3 cut(s)	563, 573, 580
BsnI	GGCC	3 cut(s)	5, 366, 611
BsoBI	CYCGRG	2 cut(s)	75, 148
Bsp1286I	GDGCHC	3 cut(s)	82, 856, 1115
Bsp143I	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
BspACI	CCGC	4 cut(s)	9, 470, 988, 1012
BspANI	GGCC	3 cut(s)	5, 366, 611
BspCNI	CTCAG	2 cut(s)	271, 298
BspLI	GGNNCC	3 cut(s)	147, 639, 1052
BspPI	GGATC	5 cut(s)	398, 499, 632, 645, 1041
BspQI	GCTCTTC	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	633, 891
BssMI	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	483, 635
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	2 cut(s)	837, 1062
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	683, 1014
BstDEI	CTNAG	4 cut(s)	279, 306, 592, 704
BstF5I	GGATG	4 cut(s)	112, 136, 343, 550
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	6 cut(s)	70, 393, 494, 640, 980, 1036
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 197, 740, 827
BstNI	CCWGG	2 cut(s)	483, 635
BstSCI	CCNGG	2 cut(s)	481, 633
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	6 cut(s)	189, 690, 699, 702, 796, 799
BstX2I	RGATCY	2 cut(s)	491, 637
BstYI	RGATCY	2 cut(s)	491, 637
BsuRI	GGCC	3 cut(s)	5, 366, 611
BtsCI	GGATG	4 cut(s)	112, 136, 343, 550
BtsI	GCAGTG	2 cut(s)	37, 273
BtsIMutI	CAGTG	2 cut(s)	37, 273
Cac8I	GCNNGC	2 cut(s)	683, 1014
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	907
Cfr13I	GGNCC	2 cut(s)	145, 610
CseI	GACGC	2 cut(s)	37, 883
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	334, 377
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	279, 306, 592, 704
DpnI	GATC	6 cut(s)	69, 392, 493, 639, 979, 1035
DpnII	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
Eam1104I	CTCTTC	2 cut(s)	837, 1062
EarI	CTCTTC	2 cut(s)	837, 1062
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	891
Eco24I	GRGCYC	2 cut(s)	82, 1115
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	714, 1023
Eco88I	CYCGRG	2 cut(s)	75, 148
EcoICRI	GAGCTC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	481, 633
EcoT14I	CCWWGG	1 cut(s)	891
EcoT38I	GRGCYC	2 cut(s)	82, 1115
ErhI	CCWWGG	1 cut(s)	891
FaeI	CATG	2 cut(s)	337, 380
FalI	AAGNNNNNCTT	2 cut(s)	967, 999
FaqI	GGGAC	3 cut(s)	563, 573, 580
FatI	CATG	2 cut(s)	333, 376
FauI	CCCGC	1 cut(s)	1005
Fnu4HI	GCNGC	7 cut(s)	178, 471, 679, 713, 716, 785, 788
FokI	GGATG	4 cut(s)	119, 143, 350, 557
FriOI	GRGCYC	2 cut(s)	82, 1115
Fsp4HI	GCNGC	7 cut(s)	178, 471, 679, 713, 716, 785, 788
FspBI	CTAG	2 cut(s)	98, 1097
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	7 cut(s)	178, 471, 679, 713, 716, 785, 788
HaeIII	GGCC	3 cut(s)	5, 366, 611
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	2 cut(s)	37, 883
HhaI	GCGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	337, 380
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	5 cut(s)	140, 478, 689, 922, 1039
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	37, 621, 1027
Hpy188I	TCNGA	6 cut(s)	145, 307, 544, 694, 799, 1038
Hpy188III	TCNNGA	4 cut(s)	128, 446, 647, 760
Hpy8I	GTNNAC	3 cut(s)	37, 621, 1027
Hpy99I	CGWCG	2 cut(s)	17, 53
HpyAV	CCTTC	2 cut(s)	259, 998
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	1 cut(s)	1119
HpyCH4V	TGCA	3 cut(s)	548, 743, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 197, 740, 827
HpyF3I	CTNAG	4 cut(s)	279, 306, 592, 704
HpySE526I	ACGT	1 cut(s)	1119
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	337, 380
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	6 cut(s)	189, 690, 699, 702, 796, 799
LweI	GCATC	4 cut(s)	339, 535, 790, 908
MaeI	CTAG	2 cut(s)	98, 1097
MaeII	ACGT	1 cut(s)	1119
MalI	GATC	6 cut(s)	69, 392, 493, 639, 979, 1035
MboI	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
MboII	GAAGA	2 cut(s)	824, 1079
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	2 cut(s)	491, 637
MhlI	GDGCHC	3 cut(s)	82, 856, 1115
MluCI	AATT	7 cut(s)	231, 432, 671, 765, 880, 926, 954
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	9 cut(s)	16, 74, 264, 479, 482, 601, 729, 1063, 1117
MroXI	GAANNNNTTC	2 cut(s)	269, 831
MseI	TTAA	4 cut(s)	213, 777, 938, 1074
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	483, 635
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	483, 635
MwoI	GCNNNNNNNGC	4 cut(s)	86, 197, 740, 827
NdeII	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
NlaIII	CATG	2 cut(s)	337, 380
NlaIV	GGNNCC	3 cut(s)	147, 639, 1052
NmeAIII	GCCGAG	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	837
PdmI	GAANNNNTTC	2 cut(s)	269, 831
PfeI	GAWTC	4 cut(s)	140, 689, 922, 1039
PflMI	CCANNNNNTGG	2 cut(s)	428, 452
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	7 cut(s)	179, 472, 680, 714, 717, 786, 789
Ple19I	CGATCG	1 cut(s)	70
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	1119
Psp6I	CCWGG	2 cut(s)	481, 633
PspGI	CCWGG	2 cut(s)	481, 633
PspN4I	GGNNCC	3 cut(s)	147, 639, 1052
PspPI	GGNCC	2 cut(s)	145, 610
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	491, 637
PvuI	CGATCG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	4 cut(s)	213, 777, 938, 1074
SatI	GCNGC	7 cut(s)	178, 471, 679, 713, 716, 785, 788
Sau3AI	GATC	6 cut(s)	67, 390, 491, 637, 977, 1033
Sau96I	GGNCC	2 cut(s)	145, 610
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	483, 635
SduI	GDGCHC	3 cut(s)	82, 856, 1115
SfaNI	GCATC	4 cut(s)	339, 535, 790, 908
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	7 cut(s)	231, 432, 671, 765, 880, 926, 954
SsiI	CCGC	4 cut(s)	9, 470, 988, 1012
SspMI	CTAG	2 cut(s)	98, 1097
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	481, 633
StyI	CCWWGG	1 cut(s)	891
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	1 cut(s)	1122
TaqI	TCGA	5 cut(s)	66, 171, 654, 759, 1101
TasI	AATT	7 cut(s)	231, 432, 671, 765, 880, 926, 954
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	4 cut(s)	140, 689, 922, 1039
Tru1I	TTAA	4 cut(s)	213, 777, 938, 1074
Tru9I	TTAA	4 cut(s)	213, 777, 938, 1074
TscAI	CASTG	2 cut(s)	37, 280
TseI	GCWGC	6 cut(s)	177, 678, 712, 715, 784, 787
TspDTI	ATGAA	6 cut(s)	10, 107, 147, 786, 840, 965
TspRI	CASTG	2 cut(s)	37, 280
Van91I	CCANNNNNTGG	2 cut(s)	428, 452
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	231, 671
XmnI	GAANNNNTTC	2 cut(s)	269, 831
XspI	CTAG	2 cut(s)	98, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.