Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Forward (+)

7775020 .. 7777895

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATCATCATCAAAACTTTGTCTCATCGCATCTTTTTCCCCAAATTCTCACAAACCTTCTCTTCTCAATTCCACCAAACCCTCAGATTCTCAATCTCCGATCGTCGGAAATTCTCAGCGATGGCCGGAGCTGGCGTCGATGATTTCGTTAAAGGAAATGTTTTTCCGAATGGTGTCGCTCTCATCACTCTCGATCGAACCAAAGCTCTCAACGCCATGAATTTAGATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGCAGGGATGGATATTAAAGGAGTTGCTGCAGAAATCCAAAAGGACAAAAACACACCTCTTGTGCAAAAGGTATTTACAGCAGAGTATACACTGATATGTGCAATTGCTGCGTACAAAAAGCCATATATTTCATTGATGGATGGTATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGTCGCTACCGTGTGATAACAGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTCCCTGATGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGCAATCCTGAATCTGAGGCCCATCTCAAATCACTTTTGCCTCACATAGAGTCAGCCTTTAGCTCAAATAAGTCTATTAAGGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTTCAGTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCATTTTCTCTTTACCTAACACAAAAGTATTTCTCCAATGTTGCATGTGCCAAGAGTAAACCCGAAAACGAATTAGCAACACTTAATGGCGTAATGAAAACTGAGTATCGCATTGCACTAAGATCTGCCCTGCGTGGTGATTTTGCTGAAGGTGTTAGAGCAGTTTTGATTGACAAGGATCAGAATCCAAAATGGAACCCGACAAGCATTGAAGAGGTAGACGAAAACGAAGTGGAAGCTCTGTTTAAACCATTAAGTCCAGAAGTGGAAGAGTTAAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

421

Amino Acids

46.25

Weight (kDa)

6.23

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	56 - 269	1.9e-23	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	60 - 409	1.2e-107	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccI	GTMKAC	2 cut(s)	410, 1200
AccII	CGCG	1 cut(s)	662
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	6 cut(s)	266, 625, 662, 758, 771, 1167
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	44, 110, 220
AcuI	CTGAAG	2 cut(s)	915, 1149
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	3 cut(s)	437, 705, 911
AfiI	CCNNNNNNNGG	5 cut(s)	105, 554, 578, 614, 760
AgsI	TTSAA	2 cut(s)	299, 1193
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
Alw21I	GWGCWC	2 cut(s)	903, 982
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	6 cut(s)	266, 625, 662, 758, 771, 1167
AoxI	GGCC	3 cut(s)	123, 315, 822
ApeKI	GCWGC	4 cut(s)	350, 431, 596, 804
ApoI	RAATTY	3 cut(s)	44, 110, 220
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	315, 823
AsuHPI	GGTGA	1 cut(s)	1130
AsuNHI	GCTAGC	1 cut(s)	718
BamHI	GGATCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	2 cut(s)	903, 982
BbvI	GCAGC	4 cut(s)	337, 418, 608, 816
BccI	CCATC	7 cut(s)	115, 325, 454, 458, 673, 715, 834
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	312, 719
BfmI	CTRYAG	1 cut(s)	351
BglII	AGATCT	1 cut(s)	1103
BisI	GCNGC	4 cut(s)	351, 432, 597, 805
BlsI	GCNGC	4 cut(s)	352, 433, 598, 806
Bme1390I	CCNGG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	315, 823
BmiI	GGNNCC	2 cut(s)	765, 1178
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	921
BpmI	CTGGAG	1 cut(s)	630
BsaBI	GATNNNNATC	3 cut(s)	8, 768, 1164
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	607
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 606, 636
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 554, 578, 614, 760
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	3 cut(s)	8, 768, 1164
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	3 cut(s)	336, 469, 777
BseJI	GATNNNNATC	3 cut(s)	8, 768, 1164
BseLI	CCNNNNNNNGG	5 cut(s)	105, 554, 578, 614, 760
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	6 cut(s)	97, 129, 750, 810, 915, 1074
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	337, 418, 608, 816
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	662
Bsh1285I	CGRYCG	2 cut(s)	103, 196
BshFI	GGCC	3 cut(s)	125, 317, 824
BsiEI	CGRYCG	2 cut(s)	103, 196
BsiHKAI	GWGCWC	2 cut(s)	903, 982
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	5 cut(s)	105, 554, 578, 614, 760
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	125, 317, 824
Bsp1286I	GDGCHC	2 cut(s)	903, 982
Bsp143I	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
BspACI	CCGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	125, 317, 824
BspCNI	CTCAG	6 cut(s)	96, 128, 751, 811, 916, 1075
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	2 cut(s)	765, 1178
BspMAI	CTGCAG	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	6 cut(s)	266, 625, 662, 758, 771, 1167
BspQI	GCTCTTC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	1092
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
BssNAI	GTATAC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	515, 535, 678
Bst6I	CTCTTC	4 cut(s)	67, 891, 1188, 1245
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	133, 720
BstDEI	CTNAG	7 cut(s)	83, 115, 759, 819, 924, 1083, 1100
BstENI	CCTNNNNNAGG	2 cut(s)	612, 758
BstF5I	GGATG	3 cut(s)	336, 469, 777
BstFNI	CGCG	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	9 cut(s)	6, 103, 196, 274, 620, 657, 766, 1106, 1162
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
BstMCI	CGRYCG	2 cut(s)	103, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 323, 431, 953
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	1029
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	337, 418, 608, 816
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	4 cut(s)	617, 654, 763, 1103
BstYI	RGATCY	4 cut(s)	617, 654, 763, 1103
BstZ17I	GTATAC	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	125, 317, 824
BtgZI	GCGATG	2 cut(s)	11, 134
BtsCI	GGATG	3 cut(s)	336, 469, 777
BtsIMutI	CAGTG	3 cut(s)	413, 674, 921
Cac8I	GCNNGC	2 cut(s)	133, 720
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	315, 823
CseI	GACGC	3 cut(s)	124, 680, 703
Csp6I	GTAC	3 cut(s)	436, 704, 910
CviAII	CATG	4 cut(s)	217, 503, 544, 1026
CviQI	GTAC	3 cut(s)	436, 704, 910
DdeI	CTNAG	7 cut(s)	83, 115, 759, 819, 924, 1083, 1100
DpnI	GATC	9 cut(s)	5, 102, 195, 273, 619, 656, 765, 1105, 1161
DpnII	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
DraI	TTTAAA	1 cut(s)	1228
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	4 cut(s)	67, 891, 1188, 1245
EarI	CTCTTC	4 cut(s)	67, 891, 1188, 1245
Ecl136II	GAGCTC	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	903
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	2 cut(s)	915, 1149
EcoICRI	GAGCTC	1 cut(s)	901
EcoNI	CCTNNNNNAGG	2 cut(s)	612, 758
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	903
FaeI	CATG	4 cut(s)	220, 506, 547, 1029
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	4 cut(s)	216, 502, 543, 1025
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	410, 1200
Fnu4HI	GCNGC	4 cut(s)	351, 432, 597, 805
FokI	GGATG	3 cut(s)	343, 476, 764
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	4 cut(s)	351, 432, 597, 805
FspBI	CTAG	2 cut(s)	312, 719
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	4 cut(s)	351, 432, 597, 805
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	125, 317, 824
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	3 cut(s)	124, 680, 703
HhaI	GCGC	1 cut(s)	664
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	220, 506, 547, 1029
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	6 cut(s)	87, 266, 815, 854, 926, 1165
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	3 cut(s)	411, 1040, 1201
Hpy188III	TCNNGA	6 cut(s)	191, 254, 498, 773, 812, 1241
Hpy8I	GTNNAC	3 cut(s)	411, 1040, 1201
Hpy99I	CGWCG	2 cut(s)	108, 140
HpyAV	CCTTC	3 cut(s)	67, 293, 1124
HpyCH4III	ACNGT	3 cut(s)	515, 535, 678
HpyCH4V	TGCA	6 cut(s)	326, 353, 388, 425, 1025, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 323, 431, 953
HpyF3I	CTNAG	7 cut(s)	83, 115, 759, 819, 924, 1083, 1100
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	220, 506, 547, 1029
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	2 cut(s)	128, 977
Lsp1109I	GCAGC	4 cut(s)	337, 418, 608, 816
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	312, 719
MalI	GATC	9 cut(s)	5, 102, 195, 273, 619, 656, 765, 1105, 1161
MboI	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
MboII	GAAGA	5 cut(s)	54, 908, 921, 1205, 1262
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	4 cut(s)	617, 654, 763, 1103
MhlI	GDGCHC	2 cut(s)	903, 982
MluCI	AATT	7 cut(s)	44, 68, 110, 220, 426, 558, 1052
MlyI	GAGTC	2 cut(s)	863, 935
MmeI	TCCRAC	1 cut(s)	86
MseI	TTAA	8 cut(s)	150, 339, 728, 882, 1065, 1227, 1235, 1256
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	609
MssI	GTTTAAAC	1 cut(s)	1228
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	212, 323, 431, 953
NdeII	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	4 cut(s)	220, 506, 547, 1029
NlaIV	GGNNCC	2 cut(s)	765, 1178
NspI	RCATGY	1 cut(s)	1029
PciSI	GCTCTTC	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 678
PfeI	GAWTC	4 cut(s)	87, 266, 815, 1165
PflFI	GACNNNGTC	1 cut(s)	504
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	4 cut(s)	352, 433, 598, 806
Ple19I	CGATCG	2 cut(s)	103, 196
PleI	GAGTC	2 cut(s)	862, 934
PmeI	GTTTAAAC	1 cut(s)	1228
PpsI	GAGTC	2 cut(s)	862, 934
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	765, 1178
PspPI	GGNCC	2 cut(s)	315, 823
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	4 cut(s)	617, 654, 763, 1103
PsyI	GACNNNGTC	1 cut(s)	504
PvuI	CGATCG	2 cut(s)	103, 196
RsaI	GTAC	3 cut(s)	437, 705, 911
RsaNI	GTAC	3 cut(s)	436, 704, 910
RseI	CAYNNNNRTG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	903
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	8 cut(s)	150, 339, 728, 882, 1065, 1227, 1235, 1256
SatI	GCNGC	4 cut(s)	351, 432, 597, 805
Sau3AI	GATC	9 cut(s)	3, 100, 193, 271, 617, 654, 763, 1103, 1159
Sau96I	GGNCC	2 cut(s)	315, 823
SchI	GAGTC	2 cut(s)	863, 935
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	903, 982
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	418
Sse9I	AATT	7 cut(s)	44, 68, 110, 220, 426, 558, 1052
SsiI	CCGC	1 cut(s)	660
SspMI	CTAG	2 cut(s)	312, 719
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	515, 535, 678
TaqI	TCGA	3 cut(s)	138, 192, 196
TasI	AATT	7 cut(s)	44, 68, 110, 220, 426, 558, 1052
TfiI	GAWTC	4 cut(s)	87, 266, 815, 1165
Tru1I	TTAA	8 cut(s)	150, 339, 728, 882, 1065, 1227, 1235, 1256
Tru9I	TTAA	8 cut(s)	150, 339, 728, 882, 1065, 1227, 1235, 1256
TscAI	CASTG	3 cut(s)	420, 681, 928
TseI	GCWGC	4 cut(s)	350, 431, 596, 804
TspDTI	ATGAA	6 cut(s)	233, 273, 444, 576, 714, 1091
TspRI	CASTG	3 cut(s)	420, 681, 928
Tth111I	GACNNNGTC	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	554
XagI	CCTNNNNNAGG	2 cut(s)	612, 758
XapI	RAATTY	3 cut(s)	44, 110, 220
XceI	RCATGY	1 cut(s)	1029
XmiI	GTMKAC	2 cut(s)	410, 1200
XspI	CTAG	2 cut(s)	312, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.